genome.fa.s14.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  110  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33714229--33714267	20	2.0	20	90	10	62	15	23	5	56	1.59
33714476--33714648	50	3.5	50	80	5	156	22	27	21	27	1.99
33714539--33714717	50	3.5	50	78	9	157	22	26	21	28	1.99
33719190--33719231	23	1.9	21	90	9	66	23	9	14	52	1.71
33725824--33725924	49	2.1	49	98	0	193	53	4	8	32	1.54
33726305--33726346	23	1.9	21	90	9	66	23	9	14	52	1.71
33727875--33728021	46	3.2	46	74	7	145	30	19	21	29	1.97
33727876--33728054	46	3.9	46	75	4	137	30	19	21	29	1.97
33727880--33728054	93	1.9	93	86	2	253	29	20	21	29	1.98
33727898--33728051	46	3.3	46	77	1	164	29	18	22	29	1.98
33728817--33729108	51	5.8	49	70	12	198	28	14	26	31	1.95
33728817--33729106	102	2.9	101	81	9	340	28	14	26	31	1.95
33729968--33730510	271	2.0	271	99	0	1077	31	12	17	38	1.87
33736089--33736382	51	5.8	50	72	11	249	27	14	27	29	1.96
33736089--33736378	102	2.9	102	84	6	358	27	14	27	30	1.95
33739714--33739772	25	2.3	26	82	2	66	30	27	6	35	1.83
33739937--33740026	43	2.1	41	88	8	128	33	22	5	38	1.77
33750068--33750141	26	2.8	26	75	0	76	33	16	8	41	1.77
33763663--33763721	20	3.0	20	71	0	55	11	30	23	33	1.91
33765669--33765710	18	2.4	18	80	15	52	35	7	2	54	1.41
33770113--33770137	13	1.9	13	100	0	50	8	8	0	84	0.79
33777115--33777162	17	2.8	17	90	3	69	12	18	29	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33779096--33779134	21	1.9	19	85	10	51	25	12	7	53	1.65
33786499--33786730	61	3.8	61	100	0	464	41	21	5	31	1.75
33797376--33797553	27	6.6	27	83	3	205	26	15	28	29	1.96
33797377--33797532	82	1.9	81	88	3	233	26	15	28	29	1.96
33797373--33797553	82	2.2	81	83	2	229	27	15	27	29	1.96
33805438--33805615	27	6.6	27	83	3	205	26	15	28	29	1.96
33805439--33805594	82	1.9	81	88	3	233	26	15	28	29	1.96
33805435--33805615	82	2.2	81	83	2	229	27	15	27	29	1.96
33826181--33826660	27	17.6	27	97	1	852	25	14	29	30	1.95
33826181--33826660	82	5.9	82	96	1	874	25	14	29	30	1.95
33831256--33831550	63	4.7	62	83	3	358	36	8	25	29	1.86
33831256--33831532	125	2.2	126	83	3	353	37	8	24	29	1.85
33844401--33844495	42	2.3	42	81	3	111	27	24	27	21	1.99
33845884--33845951	34	2.0	35	85	8	95	13	5	30	50	1.65
33854348--33854456	43	2.5	43	98	0	209	25	25	12	35	1.92
33860767--33860830	22	3.0	21	79	6	67	45	18	18	17	1.86
33860822--33860929	32	3.4	32	77	11	114	37	19	21	21	1.94
33860966--33861031	27	2.5	26	82	9	71	33	24	24	18	1.97
33861138--33861208	24	3.0	24	80	0	97	42	23	7	26	1.80
33861305--33861357	27	2.0	27	88	3	81	30	24	15	30	1.95
33861362--33861695	27	12.4	27	82	5	310	25	16	16	41	1.89
33861357--33861695	54	6.3	54	82	5	357	25	16	16	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33861362--33861695	108	3.1	108	88	1	474	25	16	16	41	1.89
33867340--33867377	18	2.2	18	90	9	62	71	2	5	21	1.19
33870700--33872363	416	4.0	416	95	0	2947	40	10	19	29	1.86
33880884--33881202	59	5.5	58	77	7	297	35	13	27	23	1.92
33880927--33881217	29	10.0	29	74	8	232	35	13	28	22	1.92
33880928--33881216	88	3.3	88	89	0	454	35	13	28	22	1.92
33885098--33885189	39	2.4	39	88	0	139	31	17	32	18	1.94
33888510--33889027	27	19.3	26	83	3	500	44	20	15	18	1.87
33888510--33889028	108	4.8	108	82	5	586	44	20	15	19	1.87
33889508--33889573	34	1.9	33	81	6	78	28	21	24	25	1.99
33890457--33890540	43	2.0	43	83	4	107	36	11	23	27	1.90
33897310--33897570	40	6.5	40	75	3	193	18	29	16	35	1.93
33902464--33902490	12	2.2	12	100	0	54	51	7	0	40	1.30
33902974--33903151	27	6.6	27	83	3	205	26	15	28	29	1.96
33902975--33903130	82	1.9	81	88	3	233	26	15	28	29	1.96
33902971--33903151	82	2.2	81	83	2	229	27	15	27	29	1.96
33905485--33905520	17	2.2	17	95	5	65	19	13	25	41	1.88
33909488--33909520	17	1.9	17	93	0	57	51	9	0	39	1.34
33910470--33910517	16	2.9	16	77	17	53	64	0	12	22	1.27
33916980--33917018	17	2.3	17	100	0	78	43	10	17	28	1.82
33917528--33917723	50	3.8	50	82	4	221	26	20	30	23	1.99
33924019--33924062	21	2.1	21	83	8	54	50	2	4	43	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33924090--33924120	16	1.9	16	93	0	53	45	0	3	51	1.17
33925778--33925815	17	2.2	17	86	9	51	39	15	5	39	1.70
33926621--33932481	703	8.2	703	77	6	5161	29	21	13	34	1.92
33928594--33930147	780	2.0	780	84	2	2068	29	22	13	34	1.92
33932497--33935318	699	4.0	700	88	2	3508	30	21	13	35	1.91
33938422--33938453	2	16.0	2	100	0	64	50	0	0	50	1.00
33939012--33939052	14	2.9	14	92	0	73	12	26	24	36	1.91
33941546--33941674	43	3.0	43	86	2	188	31	29	17	21	1.96
33946254--33946366	7	16.1	7	75	12	72	39	41	0	18	1.51
33946301--33946358	21	2.7	22	91	2	91	39	46	0	13	1.44
33946294--33946384	28	3.2	28	80	11	80	42	41	0	15	1.47
33946348--33946386	21	1.9	20	89	5	60	38	46	0	15	1.46
33946280--33946390	14	7.9	14	73	6	71	42	39	0	18	1.50
33947118--33947293	96	1.8	96	100	0	352	45	3	19	31	1.68
33947500--33947741	41	5.9	40	79	7	227	28	31	18	21	1.97
33947500--33947741	82	3.0	82	80	2	272	28	31	18	21	1.97
33950814--33950953	74	1.9	74	95	0	253	40	22	8	29	1.83
33967864--33967898	3	12.3	3	93	6	56	71	28	0	0	0.86
33970332--33970375	22	2.0	22	86	4	63	50	0	2	47	1.13
33970700--33970880	91	2.0	91	95	0	326	41	15	18	24	1.89
33971193--33971365	87	2.0	87	88	0	256	27	12	17	42	1.85
33971631--33971797	84	2.0	84	93	0	289	34	16	8	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33971939--33972125	93	2.0	93	97	0	356	34	13	14	36	1.86
33972531--33972712	91	2.0	91	93	0	310	34	14	13	37	1.86
33974263--33974440	27	6.6	27	81	7	164	28	29	15	26	1.96
33974263--33974439	54	3.3	55	81	7	209	28	29	15	25	1.96
33974284--33974439	82	1.9	81	85	6	217	28	30	15	26	1.96
33978434--33978661	115	2.0	116	94	1	404	32	7	14	45	1.73
33978747--33978962	110	2.0	110	100	0	432	29	16	17	36	1.92
33980780--33980972	95	2.0	97	85	4	266	30	16	11	41	1.84
33983107--33983516	211	1.9	211	92	1	687	36	18	7	37	1.78
33983853--33984016	86	1.9	86	97	0	310	30	14	14	40	1.85
33984792--33984823	3	11.3	3	93	6	50	71	28	0	0	0.86
33986498--33986558	23	2.6	25	77	15	76	65	6	0	27	1.17
33986612--33986654	3	14.0	3	80	4	50	65	4	2	27	1.25
33986593--33986648	22	2.7	20	83	10	69	67	3	3	25	1.22
33987853--33987900	20	2.4	20	82	0	60	41	2	2	54	1.24
33990458--33990491	3	12.0	3	93	6	54	70	29	0	0	0.87
33994869--33994901	17	1.9	17	93	0	57	57	9	12	21	1.62
33995364--33995417	21	2.5	21	81	3	63	22	33	5	38	1.77
34008631--34008661	15	2.1	15	100	0	62	61	6	12	19	1.53
34017190--34017237	22	2.2	23	85	7	64	54	0	0	45	0.99
34021219--34021246	5	5.6	5	100	0	56	42	17	0	39	1.50
34023180--34023215	18	1.9	19	88	5	56	38	22	5	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34025083--34025385	40	7.6	40	88	2	387	27	27	20	24	1.99
34027233--34027382	31	4.9	31	85	3	187	31	20	4	43	1.72
34027233--34027379	61	2.4	61	89	4	215	31	21	4	43	1.71
34027248--34027363	17	7.4	17	66	18	81	31	21	5	41	1.75
34028924--34028975	20	2.7	18	77	16	50	26	15	13	44	1.84
34034218--34034284	26	2.5	26	97	2	125	16	10	11	61	1.57
34035374--34035398	13	1.9	13	100	0	50	40	48	0	12	1.40
34035443--34035467	6	4.2	6	100	0	50	68	16	0	16	1.22
34035507--34035582	9	8.4	9	79	5	91	27	7	22	42	1.81
34035507--34035582	18	4.2	18	86	0	107	27	7	22	42	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126