genome.fa.s14.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  59  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17169033--17169075	18	2.6	16	82	13	59	48	0	2	48	1.14
17169038--17169080	18	2.4	18	96	0	77	51	0	2	46	1.13
17185588--17185901	162	1.9	162	96	0	583	25	21	17	35	1.95
17191442--17191511	16	4.4	16	96	0	113	30	0	35	34	1.58
17191493--17191599	44	2.6	40	72	18	110	37	5	26	30	1.79
17191745--17191779	18	2.0	17	88	5	52	54	0	0	45	0.99
17191973--17192348	75	5.0	75	100	0	752	34	15	13	35	1.87
17193952--17194067	15	7.5	15	64	24	53	62	12	16	7	1.52
17193932--17194067	33	4.3	33	80	12	176	61	13	17	8	1.56
17194417--17194469	10	5.0	10	73	13	52	33	9	1	54	1.43
17194987--17195103	45	2.6	45	100	0	234	20	17	20	41	1.91
17196347--17196388	9	4.7	9	81	0	57	50	14	7	28	1.69
17196389--17196476	45	2.0	45	95	0	158	44	25	3	27	1.70
17205010--17205050	21	2.0	21	85	9	57	17	19	21	41	1.90
17205360--17205438	30	2.7	29	79	9	88	60	2	2	34	1.23
17205404--17205444	18	2.3	18	86	0	55	65	2	2	29	1.18
17206795--17207202	178	2.3	178	97	0	762	34	16	13	34	1.88
17219220--17219254	13	2.7	13	90	0	52	34	2	0	62	1.10
17219363--17219443	35	2.4	33	79	6	83	29	13	6	50	1.66
17230208--17230318	55	2.0	55	94	0	195	27	22	12	36	1.91
17231987--17232264	45	6.2	45	86	5	366	30	16	25	27	1.97
17234636--17234665	6	5.0	6	95	0	51	63	0	20	16	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17238480--17238513	7	4.9	7	96	0	59	17	0	0	82	0.67
17249607--17249644	16	2.3	16	82	17	51	60	15	13	10	1.59
17249805--17249880	31	2.5	31	91	0	125	42	18	13	26	1.87
17250791--17250923	62	2.1	62	98	0	257	41	15	4	39	1.67
17269586--17269715	44	3.0	44	87	0	170	33	19	21	26	1.97
17269601--17269740	44	3.2	43	76	13	133	30	19	22	27	1.98
17270334--17270380	17	2.6	19	73	13	53	6	44	25	23	1.77
17273764--17273876	41	2.8	41	86	5	160	28	15	19	37	1.92
17277853--17277959	41	2.7	41	85	2	137	28	17	19	34	1.95
17280254--17280777	262	2.0	262	100	0	1048	38	18	5	37	1.74
17280858--17280936	4	20.0	4	69	19	51	6	22	1	69	1.18
17282578--17282722	42	3.4	42	85	0	191	35	21	20	22	1.96
17282704--17282737	17	1.9	18	88	5	52	52	20	17	8	1.71
17282734--17283308	42	13.6	42	84	1	612	26	19	21	32	1.97
17285461--17285547	44	2.0	44	90	0	138	34	9	31	25	1.87
17286349--17286393	23	2.0	23	82	4	56	42	6	2	48	1.41
17286721--17286777	7	8.0	7	74	3	51	43	40	0	15	1.47
17287637--17287744	55	2.0	55	83	0	135	25	17	17	39	1.91
17288915--17289052	40	3.5	39	72	11	111	34	20	17	27	1.95
17288944--17289055	38	2.8	41	79	6	140	35	20	18	25	1.95
17289885--17289963	4	19.8	4	73	21	60	2	21	2	73	1.07
17289885--17289955	30	2.4	29	81	6	79	1	22	2	73	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17292145--17292185	22	1.9	22	85	5	57	24	34	17	24	1.96
17295097--17295249	47	3.3	47	90	0	243	49	20	10	20	1.78
17296808--17296832	13	1.9	13	100	0	50	56	4	0	40	1.18
17300303--17300519	76	2.8	77	89	3	310	23	20	25	30	1.98
17302956--17302999	22	1.9	24	90	9	74	25	20	0	54	1.45
17303369--17303397	15	1.9	15	100	0	58	0	10	6	82	0.83
17303576--17303633	17	3.4	16	78	19	64	58	0	0	41	0.98
17303573--17303633	5	12.6	5	75	25	60	59	0	0	40	0.98
17311075--17311113	19	2.1	19	100	0	78	20	17	25	35	1.95
17314475--17314517	21	2.1	20	91	4	68	72	4	2	20	1.14
17316235--17316275	17	2.5	16	88	4	55	68	4	2	24	1.22
17316334--17316503	90	1.9	91	85	1	234	28	15	18	37	1.91
17318735--17318868	42	3.2	42	84	4	155	17	21	15	45	1.85
17318773--17318885	21	5.5	21	73	2	95	15	23	19	42	1.88
17325610--17325743	42	3.2	41	77	10	137	17	21	17	43	1.88
17325610--17325743	21	6.4	21	70	6	83	17	21	17	43	1.88
17328136--17328282	47	3.1	47	90	2	233	55	0	8	36	1.30
17328118--17328291	93	1.9	94	86	3	244	54	0	8	37	1.30
17328278--17328324	21	2.1	21	84	7	58	57	2	0	40	1.11
17328407--17328468	24	2.6	23	89	7	88	54	3	4	37	1.38
17330485--17330526	23	1.9	22	85	9	59	52	4	4	38	1.44
17331463--17331525	30	2.1	30	93	0	108	25	3	12	58	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17335619--17335679	32	1.9	32	93	0	104	54	6	9	29	1.59
17335619--17335676	11	5.4	11	77	8	57	53	6	8	31	1.58
17337060--17337102	22	1.9	23	85	4	61	39	2	11	46	1.53
17345407--17345445	12	3.3	12	86	13	55	61	0	2	35	1.10
17345422--17345514	22	4.4	22	69	22	65	61	0	4	34	1.16
17345398--17345530	26	5.1	28	72	17	92	62	0	3	33	1.13
17345412--17345539	17	7.1	17	70	17	73	61	0	3	35	1.12
17350255--17350279	13	1.9	13	100	0	50	28	8	0	64	1.22
17356988--17357018	12	2.7	11	90	9	53	0	16	3	80	0.83
17358017--17358060	21	2.1	21	95	0	79	29	13	4	52	1.60
17360412--17360516	51	2.1	51	87	0	147	59	5	3	31	1.39
17360509--17360543	15	2.4	15	85	4	54	68	0	0	31	0.90
17360448--17360590	70	2.0	71	87	4	209	59	4	4	31	1.38
17360632--17360665	17	2.0	17	88	0	50	50	2	14	32	1.58
17361528--17361562	12	2.6	14	91	8	56	25	2	2	68	1.17
17362051--17362098	24	2.0	24	91	0	78	70	0	16	12	1.16
17370773--17370798	3	8.7	3	100	0	52	34	34	0	30	1.58
17380286--17380317	16	2.0	16	93	0	55	50	3	6	40	1.43
17389583--17389624	18	2.3	18	80	8	50	30	0	4	64	1.14
17406353--17406382	15	2.1	15	93	6	53	50	23	0	26	1.50
17406877--17406974	47	2.1	47	96	0	178	35	4	33	26	1.76
17407269--17407299	16	1.9	16	93	0	53	38	3	6	51	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17407374--17407421	25	1.9	25	100	0	96	47	8	4	39	1.53
17407487--17407511	8	3.1	8	100	0	50	24	12	0	64	1.27
17410677--17410810	13	10.2	13	76	10	103	52	4	3	38	1.39
17410645--17410744	27	3.7	27	80	5	105	54	5	4	37	1.41
17410677--17410772	40	2.4	40	87	3	131	54	4	4	37	1.39
17412440--17412528	28	3.1	28	84	9	126	58	24	4	12	1.53
17412434--17412522	30	3.1	30	83	9	130	58	23	5	12	1.55
17447178--17447267	37	2.4	37	82	12	103	41	3	3	52	1.34
17449146--17449245	40	2.4	41	93	3	166	28	23	20	29	1.98
17452306--17452352	21	2.2	22	85	11	71	21	21	34	23	1.97
17452315--17452360	21	2.2	21	88	0	65	21	19	32	26	1.97
17453787--17453836	23	2.2	23	100	0	100	30	20	34	16	1.94
17454970--17455038	29	2.4	29	100	0	138	18	39	23	18	1.93
17456467--17456609	50	2.8	50	88	1	205	21	30	22	25	1.99
17456947--17457004	30	1.9	30	82	6	73	29	20	10	39	1.86
17461115--17461147	15	2.1	16	88	5	50	30	6	0	63	1.18
17473157--17473207	22	2.2	24	77	22	56	35	0	3	60	1.15
17473361--17473437	14	5.0	15	71	20	52	42	14	9	33	1.77
17473377--17473416	20	2.0	20	90	0	62	50	12	10	27	1.72
17473365--17473431	34	1.9	35	90	3	109	46	13	8	31	1.74
17475455--17475497	11	4.0	11	84	6	61	20	46	4	27	1.71
17475454--17475496	21	2.0	21	90	4	68	20	46	2	30	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17480796--17480844	23	2.1	23	96	0	89	32	16	10	40	1.82
17481567--17481620	11	4.8	12	80	15	62	24	31	1	42	1.65
17481567--17481655	11	8.4	11	67	19	55	23	30	2	43	1.66
17481580--17481679	51	2.0	51	90	4	157	25	27	2	46	1.64
17481582--17481690	51	2.1	51	85	6	141	28	23	1	45	1.63
17481677--17481716	15	2.6	16	88	8	64	42	0	0	57	0.98
17481677--17481726	15	3.5	14	79	20	59	40	0	0	60	0.97
17484097--17484148	22	2.4	22	90	3	79	46	28	0	25	1.53
17484082--17484206	57	2.2	57	91	1	196	43	32	0	24	1.60
17484147--17484211	22	3.0	22	90	2	105	43	30	1	24	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126