genome.fa.s14.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  32  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9180914--9181065	71	2.1	72	91	1	243	23	17	28	30	1.97
9183235--9183314	40	2.0	40	95	0	142	45	17	15	22	1.85
9185848--9185872	13	1.9	13	100	0	50	60	0	0	40	0.97
9187702--9187776	32	2.4	31	80	8	80	44	16	5	34	1.70
9187911--9187949	20	1.9	19	85	10	51	28	0	2	69	1.02
9188662--9188686	7	3.6	7	100	0	50	48	0	0	52	1.00
9196393--9196423	12	2.7	11	90	9	53	64	0	3	32	1.09
9201592--9201633	22	1.9	22	85	0	57	54	2	2	40	1.26
9216054--9216089	18	2.0	18	100	0	72	22	27	16	33	1.95
9217281--9217363	42	2.0	42	92	0	139	26	21	24	27	1.99
9222244--9222356	57	2.0	57	100	0	226	38	20	10	30	1.86
9236921--9237060	43	3.5	42	70	26	140	32	25	18	23	1.97
9236885--9237097	76	2.8	77	91	1	356	30	26	20	22	1.98
9237753--9237832	40	2.0	40	92	0	133	48	12	11	27	1.75
9238658--9238796	46	3.0	46	95	0	242	28	25	9	35	1.87
9242313--9242384	25	2.9	25	91	4	110	31	19	25	23	1.98
9242722--9242763	21	2.0	21	85	0	57	40	21	0	38	1.53
9243131--9243264	68	2.0	66	94	2	232	54	11	9	24	1.66
9252788--9253071	88	3.2	88	74	4	311	30	23	16	29	1.96
9252788--9253164	176	2.1	177	93	0	657	28	24	17	28	1.97
9252872--9253150	88	3.2	88	75	8	332	26	24	17	31	1.97
9252872--9253177	44	7.0	43	70	6	175	26	24	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9267377--9267521	75	1.9	74	88	1	218	35	15	20	28	1.93
9267797--9267833	13	2.8	13	100	0	74	70	0	13	16	1.17
9267845--9267877	14	2.4	14	94	0	57	42	0	12	45	1.41
9268265--9268353	3	29.3	3	82	8	101	65	2	4	28	1.24
9269692--9269728	19	1.9	19	100	0	74	29	5	37	27	1.79
9283273--9283337	30	2.2	29	81	8	76	30	27	6	35	1.81
9283280--9283337	30	1.9	30	85	0	80	31	24	6	37	1.82
9284394--9284454	32	1.9	32	86	0	86	26	6	16	50	1.69
9285631--9285675	20	2.4	18	79	13	54	51	0	4	44	1.21
9285755--9285796	19	2.2	20	91	4	68	50	11	9	28	1.70
9285780--9285817	14	2.7	14	95	0	67	39	18	5	36	1.73
9292518--9292548	16	1.9	16	93	0	53	22	16	16	45	1.85
9299088--9299123	17	2.1	17	100	0	72	11	11	11	66	1.45
9299451--9299514	33	1.9	34	87	6	96	43	17	4	34	1.69
9300382--9300427	22	2.1	21	84	4	56	17	4	19	58	1.55
9300413--9300496	23	3.7	23	88	0	132	20	7	28	44	1.78
9304405--9304438	17	2.0	17	94	0	59	44	5	0	50	1.26
9304405--9304443	17	2.4	16	87	8	53	43	5	0	51	1.24
9304409--9304448	17	2.3	18	83	12	57	47	5	0	47	1.24
9304537--9304578	15	2.7	16	82	14	52	45	0	2	52	1.13
9304528--9304569	15	2.9	15	82	10	52	47	0	0	52	1.00
9304511--9304821	157	2.0	157	97	0	586	47	4	2	45	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9304681--9304715	18	2.0	17	88	5	52	45	0	0	54	0.99
9304951--9305001	16	3.2	16	94	0	84	33	37	0	29	1.58
9307929--9308159	94	2.5	94	83	0	282	26	18	19	35	1.94
9308129--9308299	44	3.6	51	68	17	132	31	16	16	35	1.91
9308087--9308299	94	2.3	92	84	4	268	30	16	17	35	1.92
9308483--9308918	44	9.4	44	67	19	206	28	19	19	33	1.96
9308422--9309085	94	7.1	94	83	3	746	29	18	18	32	1.95
9308451--9308903	50	9.6	48	65	22	158	28	20	18	32	1.96
9308422--9309085	282	2.4	281	83	3	852	29	18	18	32	1.95
9317444--9317485	19	2.3	19	83	4	50	33	7	9	50	1.62
9320952--9320983	17	1.9	16	93	6	55	21	0	12	65	1.25
9326191--9326270	29	2.7	29	84	3	88	30	10	20	40	1.85
9332391--9332458	25	2.7	26	82	11	79	20	27	16	35	1.94
9333128--9333178	25	2.0	25	100	0	102	37	3	23	35	1.74
9335317--9335412	26	3.7	26	83	2	113	38	17	23	19	1.93
9338778--9339376	312	1.9	311	92	2	1006	27	11	21	38	1.88
9341835--9341861	13	2.1	13	100	0	54	22	7	0	70	1.12
9356410--9356511	28	3.7	28	86	2	134	31	10	25	32	1.90
9357261--9357980	23	30.8	24	69	12	272	27	15	18	38	1.90
9357287--9357989	93	7.5	94	92	1	797	27	14	18	39	1.90
9357287--9357984	233	3.0	233	87	1	914	27	14	18	38	1.90
9357807--9358024	23	9.0	24	69	21	93	28	12	16	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9359061--9359111	20	2.6	19	84	9	66	45	15	13	25	1.83
9359331--9359373	22	1.9	23	85	4	61	39	13	2	44	1.57
9362159--9362200	5	8.4	5	89	0	57	16	28	19	35	1.93
9362583--9362624	17	2.4	18	80	11	52	61	2	2	33	1.21
9362614--9362656	22	2.0	22	85	0	59	48	2	0	48	1.14
9365888--9366048	29	5.3	29	68	8	115	27	25	12	34	1.92
9365918--9366026	32	3.5	32	70	12	109	27	25	10	36	1.88
9365796--9366048	61	4.2	61	77	3	251	27	25	14	33	1.94
9369465--9369514	25	2.0	25	81	14	59	32	8	0	60	1.26
9373390--9373418	12	2.3	13	94	5	51	65	0	0	34	0.93
9373839--9373882	23	1.9	23	85	0	61	34	29	15	20	1.94
9375252--9375280	12	2.3	13	94	5	51	65	0	0	34	0.93
9377230--9377352	31	4.1	29	72	11	88	23	14	18	43	1.87
9377235--9377360	29	4.2	29	73	9	101	24	16	16	42	1.88
9390785--9390809	8	3.1	8	100	0	50	64	0	12	24	1.27
9396651--9396676	12	2.2	12	100	0	52	0	7	7	84	0.77
9401483--9401551	3	23.0	3	100	0	138	66	0	33	0	0.92
9408209--9408247	20	2.0	20	90	10	62	48	15	5	30	1.66
9413766--9413902	72	1.9	72	84	3	186	42	10	13	33	1.79
9414087--9414247	32	4.8	33	79	11	184	18	24	17	40	1.91
9414087--9414257	67	2.6	67	91	1	263	18	22	16	42	1.89
9414211--9415107	448	2.0	448	99	0	1767	24	17	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9417506--9417550	20	2.1	22	84	12	58	13	11	8	66	1.44
9422193--9422461	35	8.0	34	85	6	334	18	22	18	40	1.91
9422188--9422451	102	2.6	102	92	1	426	18	23	18	40	1.91
9422188--9422461	67	4.0	68	89	4	342	18	22	17	41	1.90
9425262--9425306	20	2.1	22	84	12	58	13	11	8	66	1.44
9425836--9425890	17	3.2	17	68	0	56	30	12	12	43	1.80
9430562--9430661	50	2.0	48	84	7	130	29	16	9	46	1.77
9437109--9437357	50	4.8	50	85	4	284	20	29	24	26	1.99
9437108--9437357	100	2.4	104	88	6	357	20	29	24	26	1.99
9437452--9437483	13	2.5	13	94	0	55	56	12	0	31	1.37
9439513--9439562	25	2.0	25	96	0	91	10	20	26	44	1.82
9445085--9445142	21	2.8	21	86	0	80	27	13	27	31	1.94
9448370--9448409	17	2.5	16	84	11	55	75	0	2	22	0.93
9448370--9448409	11	3.7	11	87	12	57	75	0	2	22	0.93
9448515--9448566	10	5.4	9	76	19	52	34	1	1	61	1.18
9448526--9448564	18	2.1	19	90	4	62	35	0	2	61	1.10
9450129--9450217	33	2.6	34	76	13	94	64	2	3	30	1.22
9451072--9451192	61	2.0	61	81	0	143	27	15	24	32	1.96
9454346--9454385	21	1.9	21	85	10	55	45	7	7	40	1.61
9459244--9459365	43	2.8	43	84	1	163	23	17	26	32	1.96
9466886--9466953	34	2.0	35	85	2	93	32	10	14	42	1.80
9467069--9467275	43	4.9	42	76	13	201	22	15	28	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9467076--9467277	85	2.4	84	79	10	207	23	15	27	33	1.95
9469454--9469535	30	2.7	30	90	0	119	37	20	17	24	1.93
9474267--9474499	40	5.9	38	76	7	171	32	16	29	21	1.95
9474283--9474501	80	2.7	80	88	2	307	31	17	29	21	1.96
9474310--9474501	40	4.8	39	80	5	233	33	16	28	21	1.95
9485408--9485468	30	2.0	31	84	9	81	36	3	42	18	1.66
9487414--9487598	40	4.6	41	78	5	164	34	18	28	18	1.95
9487414--9487598	80	2.3	80	82	3	212	34	18	28	18	1.95
9495932--9495967	13	2.7	14	87	12	58	41	13	8	36	1.75
9497471--9497687	27	8.1	27	81	1	211	41	23	17	18	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126