genome.fa.s14.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  88  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26788085--26788168	43	2.0	43	87	0	123	35	20	14	29	1.92
26803224--26803348	43	3.0	43	80	11	150	28	17	22	31	1.97
26811493--26811755	40	6.6	40	88	3	325	24	20	27	26	1.99
26811532--26811790	80	3.3	80	85	3	256	25	20	27	25	1.99
26819446--26819708	40	6.6	40	88	3	325	24	20	27	26	1.99
26819485--26819743	80	3.3	80	85	3	256	25	20	27	25	1.99
26821895--26821981	43	2.0	44	86	2	122	27	16	25	31	1.96
26834060--26834088	8	3.6	8	100	0	58	86	0	13	0	0.58
26851619--26852683	534	2.0	534	90	1	1697	31	15	16	36	1.91
26854034--26854089	25	2.2	25	87	12	80	25	19	23	32	1.98
26854052--26854125	25	3.0	25	74	7	69	32	21	18	27	1.97
26857835--26857945	48	2.3	49	87	1	152	52	5	2	39	1.39
26858319--26858351	13	2.5	13	95	5	57	36	0	12	51	1.39
26863526--26863557	16	2.1	16	88	11	50	40	0	0	59	0.97
26863624--26863673	20	2.6	19	76	14	50	44	4	0	52	1.20
26871774--26871836	30	2.1	30	93	0	108	28	3	11	57	1.49
26871962--26871995	12	2.9	12	95	4	61	64	0	0	35	0.94
26878592--26878656	32	2.0	32	100	0	130	36	18	24	20	1.94
26879427--26879577	73	2.1	74	87	3	216	26	24	19	29	1.98
26884111--26884141	10	3.0	10	95	4	53	29	0	0	70	0.87
26886247--26886286	18	2.2	18	95	0	71	57	32	0	10	1.32
26888112--26888146	18	1.9	18	100	0	70	11	28	0	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26890581--26890847	120	2.2	120	96	0	489	43	1	5	48	1.38
26890791--26890825	18	2.0	17	88	5	52	45	0	0	54	0.99
26891113--26891164	16	3.2	16	88	0	77	28	0	34	36	1.58
26891145--26891239	45	2.1	44	88	1	136	34	5	27	32	1.79
26891401--26891435	18	2.0	17	88	5	52	54	0	0	45	0.99
26891359--26891431	27	2.7	27	76	8	76	52	2	0	45	1.15
26891548--26891582	18	2.0	17	88	5	52	54	0	0	45	0.99
26891320--26891594	147	1.9	149	96	1	509	46	3	2	47	1.33
26891568--26891746	55	3.1	54	64	22	128	49	7	2	41	1.43
26891668--26891702	18	2.0	17	88	5	52	60	0	0	40	0.97
26891778--26891809	16	1.9	17	93	6	57	46	0	0	53	1.00
26891531--26891823	120	2.4	120	92	2	482	50	5	2	42	1.36
26891839--26892046	91	2.3	91	85	4	258	46	3	4	45	1.41
26892560--26892589	12	2.5	12	94	0	51	43	20	23	13	1.86
26892849--26892879	14	2.2	14	100	0	62	45	29	6	19	1.75
26895832--26895885	20	2.7	21	82	8	76	27	14	24	33	1.94
26898196--26898225	3	10.0	3	100	0	60	33	0	0	66	0.92
26898592--26898692	31	3.3	31	92	0	166	27	17	23	30	1.97
26898667--26898792	58	2.2	58	79	2	137	38	15	22	23	1.92
26899472--26899499	13	2.2	13	100	0	56	21	7	14	57	1.61
26899529--26899564	3	12.0	3	90	0	54	36	2	0	61	1.11
26901462--26901494	16	2.1	16	88	5	50	15	0	9	75	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26902658--26902692	18	1.9	18	100	0	70	51	5	8	34	1.56
26903120--26903227	37	2.9	36	78	16	107	39	3	3	52	1.37
26911900--26911938	19	2.1	19	100	0	78	33	25	5	35	1.78
26914142--26914211	31	2.3	31	92	0	113	28	17	24	30	1.97
26917938--26917973	17	2.1	18	89	5	56	33	5	2	58	1.36
26918384--26918535	70	2.2	71	91	1	252	29	5	9	55	1.55
26918415--26918523	35	3.1	35	67	10	96	30	6	8	55	1.55
26931833--26931857	11	2.3	11	100	0	50	60	8	0	32	1.26
26934814--26934920	27	4.0	27	81	2	117	27	18	15	38	1.91
26935763--26935788	12	2.2	12	100	0	52	57	0	42	0	0.98
26935743--26935801	18	3.2	18	79	9	66	62	0	37	0	0.95
26959010--26959055	18	2.7	18	80	12	53	34	6	2	56	1.37
26960933--26960990	31	1.9	30	86	10	82	50	1	6	41	1.39
26961239--26961282	21	2.1	21	86	0	61	40	9	0	50	1.34
26961239--26961288	20	2.4	21	83	9	59	46	8	0	46	1.32
26962960--26962987	12	2.3	12	100	0	56	57	7	7	28	1.52
26968109--26969539	94	15.3	93	81	3	1462	26	20	19	33	1.96
26968487--26969488	44	21.6	44	67	18	380	26	20	19	33	1.96
26976211--26976243	16	2.1	15	94	5	57	69	6	6	18	1.30
26976580--26976607	12	2.3	12	100	0	56	78	0	14	7	0.95
26987789--26988033	123	2.0	123	83	1	312	31	26	16	24	1.96
26992121--26992174	20	2.7	20	85	5	74	57	7	0	35	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26992179--26992225	20	2.5	19	89	6	69	63	2	0	34	1.06
26992194--26992243	10	5.2	10	76	9	50	58	2	0	40	1.10
26995005--26995112	41	2.6	41	89	0	144	24	20	22	33	1.97
27002811--27002911	41	2.5	41	86	3	132	20	20	20	37	1.94
27006277--27006576	94	3.2	93	82	1	384	26	21	20	32	1.98
27014954--27015003	24	2.1	24	92	0	82	66	4	8	22	1.35
27019824--27019935	40	2.8	40	90	0	170	14	14	26	44	1.83
27019818--27019954	40	3.5	39	85	3	168	13	14	27	44	1.82
27021573--27021666	43	2.2	43	84	3	118	26	14	26	31	1.95
27033099--27033246	72	2.0	72	83	6	183	29	29	1	39	1.65
27034062--27034100	13	3.1	13	88	3	53	48	0	5	46	1.24
27040467--27040507	14	2.9	14	88	3	55	26	2	2	68	1.15
27048038--27048069	5	6.4	5	100	0	64	81	0	0	18	0.70
27060677--27060755	26	3.2	25	84	12	110	21	25	18	34	1.96
27060677--27060748	23	3.0	23	86	10	92	20	25	19	34	1.96
27060924--27060978	20	2.8	20	80	0	65	29	7	21	41	1.80
27061018--27061071	25	2.2	25	82	0	63	42	5	14	37	1.69
27067150--27067183	7	5.0	7	89	3	52	55	41	2	0	1.15
27070773--27070826	23	2.3	23	90	6	83	24	5	46	24	1.74
27072724--27072767	23	1.9	23	85	0	61	63	6	4	25	1.38
27079511--27079575	33	2.0	33	87	6	96	38	1	23	36	1.64
27079899--27079937	20	2.0	20	89	0	60	28	10	15	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27082042--27082076	17	1.9	19	88	11	56	65	2	22	8	1.34
27082319--27082360	20	2.1	20	100	0	84	42	14	14	28	1.84
27085373--27085415	22	2.0	22	81	9	52	41	25	2	30	1.68
27087726--27087869	75	1.9	76	95	1	263	38	11	15	34	1.83
27096119--27096232	50	2.2	50	80	6	122	35	14	18	32	1.90
27098962--27098998	9	4.1	9	85	0	56	29	8	13	48	1.71
27101202--27102097	452	2.0	453	91	1	1474	27	17	23	31	1.97
27106216--27106249	16	2.1	17	88	5	52	41	0	47	11	1.40
27106463--27106512	26	1.9	26	84	15	68	60	6	12	22	1.53
27107458--27107504	16	2.9	16	84	12	53	59	0	0	40	0.97
27108199--27108232	17	2.0	17	94	0	59	11	8	41	38	1.73
27110021--27110198	43	4.2	43	80	5	157	33	26	17	21	1.96
27110088--27110198	42	2.6	43	87	4	154	37	25	15	21	1.92
27111482--27111548	21	3.3	20	81	8	64	62	5	2	28	1.33
27115115--27115147	14	2.3	15	94	5	59	36	33	0	30	1.58
27115479--27115835	41	8.7	41	89	1	450	30	28	19	21	1.98
27126823--27127005	79	2.3	81	84	7	232	25	27	22	24	2.00
27126802--27127005	40	5.1	40	82	8	238	25	27	22	24	2.00
27132946--27132984	10	3.9	10	83	10	53	51	0	5	43	1.24
27132945--27132985	19	2.1	20	90	4	66	53	0	4	41	1.22
27133703--27133822	62	1.9	62	94	3	215	29	2	15	52	1.56
27140161--27140213	26	2.0	27	88	3	81	32	26	18	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27150893--27150985	44	2.1	46	91	4	154	36	30	4	29	1.77
27150967--27151019	16	3.3	16	86	0	79	26	32	3	37	1.74
27152043--27152083	22	1.9	21	95	5	73	19	31	19	29	1.96
27158994--27159031	16	2.5	15	83	8	58	50	5	0	44	1.24
27158999--27159031	16	2.0	17	94	5	59	54	6	0	39	1.25
27161355--27161382	9	3.1	9	100	0	56	32	10	32	25	1.90
27165733--27165800	34	2.0	33	83	11	84	44	2	2	50	1.32
27167558--27167598	21	2.0	21	85	0	55	39	9	4	46	1.58
27170403--27170465	33	1.9	33	90	3	101	39	3	19	38	1.67
27175606--27175766	19	8.3	19	67	17	73	62	2	3	31	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126