genome.fa.s14.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  36  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10653246--10653314	36	1.9	36	88	5	104	37	4	14	43	1.65
10654142--10654196	21	2.6	21	85	8	67	41	1	0	56	1.10
10655636--10656012	50	7.1	54	64	24	169	35	19	18	26	1.95
10655556--10656285	106	6.9	106	87	3	929	33	18	18	28	1.95
10655555--10656285	211	3.5	212	83	3	920	33	18	18	28	1.95
10657438--10657613	55	3.2	55	94	0	298	23	20	0	56	1.42
10657583--10657646	23	2.7	23	90	9	94	23	23	0	53	1.47
10657468--10658041	133	4.1	133	74	16	537	25	20	0	53	1.45
10657606--10657910	55	5.6	55	90	1	452	25	20	0	53	1.45
10657602--10657910	109	2.8	110	87	2	453	25	20	0	54	1.45
10657602--10657906	164	1.9	163	89	2	477	25	20	0	54	1.45
10657438--10657800	188	1.9	188	89	0	566	25	20	0	53	1.45
10657825--10657988	78	2.1	78	90	2	258	23	20	0	55	1.43
10657880--10657943	23	2.7	23	90	9	94	23	23	0	53	1.47
10657903--10658094	55	3.5	55	85	4	271	25	19	0	54	1.48
10657711--10658094	188	2.0	187	88	3	565	25	20	0	53	1.47
10657439--10658094	297	2.2	298	97	0	1242	25	20	0	54	1.46
10658325--10658408	26	3.2	26	67	12	62	30	9	3	55	1.49
10662437--10663655	213	5.6	212	78	7	983	32	18	17	31	1.94
10662437--10663656	107	11.3	107	79	7	990	32	18	17	31	1.94
10665346--10665387	15	2.9	15	82	10	52	52	0	0	47	1.00
10665372--10665679	61	5.1	61	66	17	212	49	6	1	42	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10665337--10665685	120	2.9	120	95	0	644	48	6	2	42	1.40
10665573--10665618	16	2.9	16	78	12	51	52	2	0	45	1.13
10665573--10665627	15	3.7	15	79	13	53	52	1	0	45	1.11
10667810--10667864	15	3.7	15	76	13	51	30	1	0	67	1.01
10667824--10667868	8	5.9	8	75	19	51	33	2	0	64	1.06
10668132--10668174	11	3.9	11	78	9	52	0	23	0	76	0.78
10668133--10668171	20	1.9	19	90	10	60	0	20	0	79	0.73
10668191--10668223	9	3.7	9	95	0	57	9	0	6	84	0.76
10668183--10668224	18	2.3	18	83	0	57	11	4	4	78	1.06
10672062--10672096	6	5.8	6	89	0	52	65	11	5	17	1.43
10672150--10672174	13	1.9	13	100	0	50	76	0	24	0	0.80
10674232--10675431	130	9.2	130	97	0	2195	28	19	26	24	1.99
10675449--10675744	44	6.8	44	73	11	198	25	18	26	29	1.98
10675991--10676023	5	6.6	5	100	0	66	81	0	0	18	0.68
10676508--10676542	18	1.9	18	88	11	54	2	25	5	65	1.28
10682378--10682491	41	2.9	39	77	9	124	25	16	24	33	1.96
10682997--10683026	13	2.2	14	94	5	53	16	0	0	83	0.65
10683942--10684001	3	20.0	3	75	0	57	30	6	3	60	1.39
10685312--10685362	21	2.5	20	81	15	59	43	3	25	27	1.72
10687281--10687335	21	2.6	21	85	8	67	40	1	1	56	1.21
10687370--10687396	5	5.4	5	100	0	54	0	0	37	62	0.95
10688580--10688682	27	3.8	27	85	0	134	25	23	33	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10688580--10688682	54	1.9	54	87	0	152	25	23	33	18	1.97
10688809--10688847	19	2.0	21	85	10	55	17	0	12	69	1.19
10688903--10688949	3	15.7	3	90	0	76	31	0	4	63	1.13
10689738--10689775	18	2.1	18	90	0	58	31	10	47	10	1.72
10691213--10691300	22	4.0	22	70	18	67	1	30	0	68	0.97
10691192--10691271	36	2.2	38	84	6	103	1	28	0	70	0.96
10691254--10691310	27	2.1	27	90	6	89	0	38	0	61	0.96
10691193--10691295	32	3.1	31	73	17	91	0	31	0	67	0.97
10691444--10691506	26	2.4	27	91	2	110	47	0	7	44	1.32
10692374--10692404	15	2.0	16	93	6	55	32	3	0	64	1.09
10702259--10702342	31	2.8	30	77	10	89	45	1	1	52	1.16
10703387--10703449	20	3.2	20	70	17	67	41	3	4	50	1.39
10705882--10705946	32	2.1	32	97	2	123	47	12	9	30	1.72
10707030--10707063	15	2.2	16	94	5	61	52	8	0	38	1.33
10707709--10707855	70	2.1	70	86	5	199	43	4	3	48	1.40
10707804--10707895	17	5.4	16	76	12	78	47	1	2	48	1.20
10707804--10707897	9	10.9	9	69	20	58	47	1	2	48	1.20
10707805--10707898	26	3.7	24	78	12	91	47	1	2	48	1.20
10707843--10707897	8	6.6	8	79	8	56	54	0	1	43	1.10
10707985--10708055	21	3.5	20	75	16	76	53	0	1	45	1.09
10708000--10708059	17	3.3	17	80	17	75	55	0	1	43	1.10
10707996--10708051	9	6.0	9	78	15	60	55	0	1	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10707985--10708059	38	1.9	39	91	2	125	54	0	1	44	1.08
10708061--10708098	18	2.1	19	85	5	51	39	5	0	55	1.23
10708137--10708367	97	2.4	95	86	5	311	30	17	14	37	1.90
10712143--10712183	4	10.2	4	100	0	82	51	24	0	24	1.49
10720122--10720180	31	1.9	31	89	6	93	35	10	0	54	1.34
10720864--10720907	9	4.7	9	81	10	52	40	4	2	52	1.34
10720869--10720915	20	2.3	20	85	0	67	44	4	2	48	1.34
10726316--10726362	24	1.9	24	83	12	60	34	21	0	44	1.52
10728632--10728685	25	2.2	25	96	0	99	46	12	16	24	1.82
10728973--10729038	15	4.1	15	70	24	53	71	4	1	22	1.13
10728975--10729037	25	2.5	24	76	19	58	73	4	1	20	1.11
10736534--10736579	21	2.1	22	88	4	67	56	4	0	39	1.19
10738838--10739065	116	1.9	119	86	7	331	32	17	10	39	1.84
10745758--10745814	19	3.0	19	85	10	64	36	0	1	61	1.07
10751786--10751839	28	2.0	27	96	3	99	62	3	0	33	1.12
10754563--10754669	56	1.9	56	84	0	142	38	20	16	24	1.93
10766015--10766076	32	1.9	32	83	6	81	33	4	4	56	1.42
10769694--10769755	32	1.9	32	83	6	81	33	4	4	56	1.42
10772762--10772802	21	2.0	21	90	0	64	19	29	21	29	1.98
10779990--10780040	21	2.4	21	93	0	84	21	41	13	23	1.89
10780657--10780722	12	5.5	11	83	3	60	36	33	3	27	1.72
10780669--10780722	24	2.2	24	93	0	90	37	33	3	25	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10783942--10784001	19	3.2	19	70	11	52	45	5	1	48	1.34
10784966--10785023	31	1.9	30	82	10	73	62	13	5	18	1.50
10786474--10786523	26	1.9	26	83	0	64	44	2	8	46	1.44
10790101--10790362	131	2.0	131	100	0	524	39	14	16	29	1.88
10790861--10790895	15	2.2	17	90	10	56	28	0	2	68	1.04
10791247--10791280	14	2.4	14	95	0	59	58	8	5	26	1.51
10795354--10795732	190	2.0	190	97	1	724	30	9	21	39	1.85
10810917--10810957	22	2.0	21	85	9	57	36	0	0	63	0.95
10813904--10813976	27	2.5	28	80	12	78	49	1	2	46	1.24
10816825--10816858	7	4.7	7	92	7	59	88	0	11	0	0.52
10816816--10816858	8	5.4	8	83	10	61	88	0	11	0	0.52
10816825--10816858	15	2.3	15	95	5	61	88	0	11	0	0.52
10816822--10816860	14	2.9	14	85	14	55	87	0	12	0	0.55
10817688--10817729	21	2.0	21	95	0	75	21	19	7	52	1.69
10839797--10839963	44	3.8	44	78	7	160	31	16	22	29	1.96
10852658--10852727	27	2.6	27	90	4	106	27	27	28	17	1.97
10852770--10852927	4	39.8	4	70	20	86	70	0	29	0	0.92
10852774--10852928	18	9.0	18	70	21	84	69	0	29	0	0.93
10852794--10852922	44	3.0	44	81	15	157	72	0	27	0	0.85
10852801--10852932	39	3.5	38	83	13	148	71	0	28	0	0.86
10852761--10852928	60	2.8	61	76	14	145	68	0	30	0	0.94
10852794--10852952	46	3.6	44	78	19	165	70	0	29	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10852844--10852955	24	4.8	24	72	20	67	68	0	31	0	0.90
10852794--10852963	83	2.0	83	83	11	211	71	0	28	0	0.87
10854443--10854598	18	8.0	18	75	17	86	69	0	30	0	0.94
10854432--10854480	22	2.1	23	88	7	73	61	0	38	0	0.96
10854438--10854622	22	8.8	21	70	22	95	68	0	31	0	0.94
10854508--10854602	39	2.6	34	77	20	104	71	1	27	0	0.93
10854439--10854571	4	32.0	4	73	19	80	69	0	30	0	0.94
10854438--10854601	42	4.0	40	77	16	160	68	0	30	0	0.94
10856550--10856614	24	2.6	25	76	23	75	0	30	0	69	0.89
10856604--10856736	4	32.0	4	74	19	80	0	30	0	69	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126