genome.fa.s14.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  124  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38582532--38582686	68	2.2	70	74	7	163	52	4	3	40	1.38
38584406--38584576	43	4.0	43	70	14	145	22	16	27	33	1.95
38585143--38585174	2	16.0	2	100	0	64	0	0	50	50	1.00
38592613--38592661	23	2.1	23	84	0	62	22	22	34	20	1.97
38593084--38593120	19	1.9	19	88	0	56	37	0	2	59	1.12
38593426--38593679	64	4.0	64	100	0	508	43	12	4	39	1.64
38595899--38595951	20	2.7	20	88	5	72	41	30	16	11	1.84
38596597--38596624	13	2.2	13	100	0	56	50	21	7	21	1.72
38599362--38599388	14	1.9	14	100	0	54	48	0	0	51	1.00
38603063--38603095	17	1.9	17	93	0	57	30	24	24	21	1.99
38604453--38604537	25	3.4	25	86	0	116	29	20	25	24	1.99
38606177--38606227	21	2.4	21	78	12	52	15	1	9	72	1.19
38613748--38613847	44	2.3	43	81	3	103	25	17	27	31	1.97
38618546--38618602	20	2.8	20	94	0	96	42	22	28	7	1.80
38621589--38622056	232	2.0	232	98	0	900	34	18	13	33	1.90
38653959--38654010	22	2.4	22	84	9	63	32	5	5	55	1.47
38653970--38654026	21	2.7	21	86	2	69	22	5	5	66	1.32
38654693--38654732	13	2.7	16	81	14	50	50	0	0	50	1.00
38654693--38654757	31	2.2	30	86	10	89	46	0	0	53	1.00
38659228--38659276	9	5.4	9	76	9	55	42	20	8	28	1.80
38659227--38659282	18	3.1	18	81	2	76	44	19	8	26	1.80
38659335--38659379	6	6.6	7	89	10	51	24	2	13	60	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38659342--38659372	6	5.0	6	96	4	53	19	0	16	64	1.29
38659342--38659385	12	3.4	13	87	9	63	22	0	11	65	1.24
38661888--38661959	28	2.6	28	84	0	90	31	11	27	29	1.91
38672478--38672518	13	2.9	14	85	10	57	68	9	0	21	1.18
38672954--38672991	17	2.2	17	100	0	76	44	5	0	50	1.24
38681988--38682041	18	2.7	21	72	19	60	29	18	11	40	1.85
38682000--38682034	18	1.9	18	100	0	70	28	17	14	40	1.88
38688306--38688333	14	2.0	14	100	0	56	50	7	21	21	1.72
38690794--38690823	15	1.9	16	93	6	53	60	0	0	40	0.97
38690782--38690825	22	2.0	21	87	12	63	61	0	0	38	0.96
38696893--38696920	14	2.0	14	100	0	56	50	7	21	21	1.72
38698422--38698466	19	2.3	20	82	17	60	33	2	2	62	1.20
38704263--38704437	30	5.9	29	70	11	104	23	24	13	38	1.91
38704268--38704471	29	6.9	30	71	12	136	24	25	13	37	1.91
38704278--38704471	59	3.3	59	85	2	273	24	24	12	38	1.90
38716920--38716955	17	2.0	17	89	10	54	52	8	0	38	1.32
38724241--38724422	40	4.6	40	84	6	228	25	28	21	24	1.99
38724241--38724422	79	2.3	81	83	7	230	25	28	21	24	1.99
38728162--38728353	50	3.8	50	83	0	222	28	21	28	21	1.99
38728172--38728353	100	1.8	100	84	0	247	28	21	28	21	1.99
38728625--38728657	12	2.8	12	90	9	50	63	0	27	9	1.24
38734752--38734777	13	2.0	13	100	0	52	30	7	15	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38735827--38736010	50	3.7	50	80	7	203	28	22	27	21	1.99
38746297--38746423	26	5.0	26	80	5	136	36	16	8	38	1.80
38746297--38746407	51	2.2	50	83	4	143	36	18	7	38	1.78
38752699--38752742	19	2.2	19	84	8	52	77	9	6	6	1.13
38752693--38752779	29	3.1	26	79	14	84	71	8	8	12	1.31
38753647--38753679	14	2.4	14	89	0	57	72	0	15	12	1.12
38755085--38755399	44	7.2	44	65	8	149	31	22	21	23	1.98
38754946--38755532	131	4.5	131	88	1	777	31	21	22	24	1.98
38755566--38755723	85	1.9	85	82	2	201	29	18	23	27	1.98
38755561--38755745	44	4.3	43	70	11	126	30	21	20	27	1.98
38755561--38755968	127	3.2	127	83	2	433	31	20	20	27	1.98
38758656--38758688	6	5.7	6	92	3	50	18	24	0	57	1.40
38760596--38760810	39	5.5	39	91	0	349	46	22	2	27	1.65
38760615--38760680	23	3.2	23	66	28	65	46	19	3	30	1.65
38762751--38762938	50	3.7	49	82	9	198	25	28	17	28	1.98
38762699--38762939	99	2.3	105	80	9	264	24	27	19	29	1.98
38765230--38765406	51	3.5	51	77	6	207	23	16	28	32	1.96
38766160--38766336	51	3.5	51	77	6	207	23	16	28	32	1.96
38764605--38767416	930	3.0	930	93	3	4566	34	12	21	31	1.90
38767112--38767288	51	3.5	51	77	6	207	23	16	28	32	1.96
38765748--38767651	952	2.0	952	100	0	3808	35	11	22	30	1.89
38771741--38771921	39	4.6	39	99	0	353	45	22	2	28	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38781861--38781957	46	2.1	46	92	0	158	32	1	21	44	1.59
38782412--38782589	27	6.6	27	83	3	205	26	15	28	29	1.96
38782413--38782568	82	1.9	81	88	3	233	26	15	28	29	1.96
38782409--38782589	82	2.2	81	83	2	229	27	15	27	29	1.96
38790475--38790652	27	6.6	27	83	3	205	26	15	28	29	1.96
38790476--38790631	82	1.9	81	88	3	233	26	15	28	29	1.96
38790472--38790652	82	2.2	81	83	2	229	27	15	27	29	1.96
38792989--38793074	45	1.9	45	87	0	127	38	22	13	25	1.91
38793081--38793194	51	2.2	51	81	3	131	34	25	15	24	1.95
38793425--38793481	30	1.9	30	89	7	89	33	22	5	38	1.77
38795486--38795542	30	1.9	30	92	0	96	28	22	8	40	1.84
38798497--38798582	45	1.9	45	95	0	154	33	23	16	26	1.95
38798591--38798770	96	1.9	96	87	3	263	32	28	15	23	1.95
38798880--38798911	10	3.3	10	95	4	57	15	18	0	65	1.27
38799013--38799069	30	1.9	30	92	0	96	28	22	8	40	1.84
38803195--38803238	23	1.9	22	82	17	54	36	25	0	38	1.56
38803286--38803371	45	1.9	45	95	0	154	33	23	16	26	1.95
38803380--38803559	96	1.9	96	87	3	263	32	28	15	23	1.95
38803669--38803700	10	3.3	10	95	4	57	15	18	0	65	1.27
38803802--38803858	30	1.9	30	92	0	96	28	22	8	40	1.84
38813132--38813161	14	2.1	14	100	0	60	16	0	30	53	1.44
38818015--38818056	21	2.0	21	95	0	75	57	26	0	16	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38826739--38826788	15	3.2	17	75	16	54	28	28	18	26	1.98
38827077--38827152	30	2.5	30	82	0	89	25	21	11	42	1.86
38827137--38827390	30	8.5	30	75	11	150	22	26	13	36	1.92
38827165--38827403	60	4.0	60	74	14	174	23	26	14	35	1.93
38827076--38827406	179	1.8	179	84	2	450	23	25	14	36	1.93
38835143--38835194	16	3.5	16	66	28	51	50	23	7	19	1.73
38835144--38835200	28	2.0	28	100	0	114	50	24	7	17	1.70
38842925--38842958	3	11.3	3	87	0	50	61	2	2	32	1.26
38842925--38842958	12	2.8	12	95	0	59	61	2	2	32	1.26
38842891--38842958	15	4.6	15	74	20	54	55	4	8	30	1.50
38844071--38844104	3	11.3	3	87	0	50	61	0	5	32	1.20
38844071--38844104	12	2.8	12	100	0	68	61	0	5	32	1.20
38845217--38845250	3	11.3	3	87	0	50	61	0	5	32	1.20
38845217--38845250	12	2.8	12	100	0	68	61	0	5	32	1.20
38846062--38846097	17	2.1	17	89	0	54	2	11	25	61	1.43
38847372--38847587	39	5.5	39	93	2	362	45	22	4	28	1.71
38848303--38848393	38	2.4	37	89	3	137	31	14	24	29	1.94
38851655--38851792	20	6.9	19	65	19	59	39	13	31	15	1.86
38851655--38851815	40	4.0	40	79	6	182	39	14	31	15	1.87
38851655--38851813	80	2.0	80	83	2	203	38	13	31	15	1.87
38851735--38851799	20	3.2	20	74	8	69	38	15	33	12	1.85
38866521--38866612	30	3.0	31	88	3	132	43	4	28	23	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38869548--38870155	304	2.0	304	100	0	1216	43	9	7	39	1.66
38875230--38875366	42	3.3	42	87	4	197	30	26	14	28	1.95
38877838--38877959	43	2.8	44	82	2	165	44	2	27	25	1.67
38892142--38892621	27	17.6	27	97	1	474	30	29	14	25	1.95
38892142--38892621	54	8.8	54	96	1	852	30	29	14	25	1.95
38892142--38892621	82	5.9	82	97	1	874	30	29	14	25	1.95
38910426--38910568	51	2.8	51	81	7	157	30	14	22	32	1.94
38930565--38930742	27	6.6	27	84	3	205	29	28	15	26	1.96
38930586--38930741	82	1.9	81	88	3	233	29	28	15	26	1.96
38933849--38933895	24	2.0	24	95	0	85	42	23	4	29	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126