genome.fa.s14.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  51  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14797713--14797758	24	2.0	23	82	4	56	32	4	2	60	1.28
14808022--14808083	29	2.1	29	87	0	88	59	11	16	12	1.61
14810625--14810664	15	2.7	15	81	14	55	67	2	7	22	1.28
14810576--14810645	24	2.9	24	79	10	63	68	4	5	21	1.28
14810627--14810689	21	3.1	19	73	13	54	71	1	7	19	1.19
14817753--14817788	18	2.1	18	89	5	56	19	13	0	66	1.24
14829512--14829562	25	2.0	26	96	3	95	54	15	3	25	1.58
14831704--14831733	10	3.0	10	90	0	51	23	0	36	40	1.55
14832463--14832561	36	2.8	36	85	0	117	28	20	28	23	1.99
14842342--14842500	41	3.7	43	77	6	135	27	28	18	25	1.98
14842775--14842985	106	2.0	106	98	0	404	34	20	8	36	1.82
14847057--14847138	28	2.9	28	92	0	137	35	15	20	28	1.94
14847057--14847154	28	3.5	28	88	2	126	35	16	22	25	1.94
14848393--14848524	66	2.0	66	100	0	264	43	12	16	27	1.83
14848737--14848779	18	2.5	17	81	7	52	65	0	2	32	1.06
14849465--14849513	22	2.3	22	80	13	57	69	4	8	18	1.30
14867114--14867151	18	2.2	18	86	9	53	68	2	5	23	1.23
14869891--14871158	634	2.0	634	99	0	2527	33	13	21	30	1.93
14874328--14874411	33	2.5	33	90	0	123	19	19	35	26	1.95
14886144--14886381	120	2.0	120	96	0	440	41	7	13	36	1.74
14888486--14888568	22	3.8	22	70	12	71	24	3	24	48	1.67
14898200--14898257	7	8.4	7	75	21	52	60	0	1	37	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14898189--14898232	20	2.2	20	92	4	72	59	0	2	38	1.10
14898401--14898464	22	2.9	22	77	11	60	65	0	0	34	0.93
14898452--14898505	21	2.3	23	87	12	76	55	0	1	42	1.10
14898500--14898528	11	2.6	11	100	0	58	58	0	0	41	0.98
14898484--14898528	22	2.1	21	84	12	56	51	0	2	46	1.13
14903769--14903814	8	5.6	8	79	5	56	45	0	0	54	0.99
14909580--14909618	11	3.4	11	80	13	51	41	12	0	46	1.42
14909569--14909618	24	2.1	24	96	0	91	40	14	0	46	1.44
14909569--14909610	13	3.4	12	80	12	50	38	16	0	45	1.48
14914016--14914065	24	2.1	24	81	7	57	62	6	2	30	1.31
14914425--14914467	16	2.6	17	81	7	52	65	4	11	18	1.42
14917845--14917885	20	2.0	21	85	4	57	31	14	2	51	1.56
14918055--14918124	29	2.5	26	77	18	70	42	1	1	54	1.18
14918073--14918122	13	3.2	16	70	18	52	48	0	0	52	1.00
14918065--14918122	29	2.0	30	83	10	75	44	1	1	51	1.21
14918462--14918502	7	5.9	7	88	11	66	70	0	0	29	0.87
14930175--14930224	25	2.0	25	92	0	82	20	22	4	54	1.61
14931310--14931340	15	2.1	14	94	5	53	0	22	0	77	0.77
14933964--14934155	50	3.8	50	84	0	249	26	22	30	20	1.99
14934815--14934847	11	2.9	12	86	13	52	33	0	0	66	0.92
14934973--14935035	30	2.1	30	90	0	99	55	14	4	25	1.58
14936436--14936485	26	2.0	26	84	7	68	28	0	4	68	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14944142--14944481	44	7.8	43	72	9	154	28	23	18	29	1.98
14944472--14945008	128	4.2	127	88	3	758	25	23	19	31	1.98
14944472--14945004	252	2.1	255	88	2	788	25	23	19	31	1.98
14944904--14945092	103	1.8	103	96	0	351	25	25	17	31	1.97
14946456--14946519	7	9.0	7	86	11	87	15	14	0	70	1.17
14946456--14946510	13	4.0	13	86	11	74	14	14	0	70	1.16
14946456--14946514	20	2.8	20	90	10	84	15	15	0	69	1.19
14947392--14947437	6	7.7	6	87	0	56	13	6	13	67	1.41
14947428--14947465	18	2.2	17	86	9	51	5	5	7	81	0.98
14947422--14947466	22	2.1	21	87	4	63	6	4	8	80	1.03
14961631--14961655	3	8.3	3	100	0	50	32	36	0	32	1.58
14964387--14964437	3	17.0	3	95	0	93	33	1	0	64	1.05
14964629--14964657	12	2.4	12	100	0	58	41	10	0	48	1.37
14965107--14965398	110	2.7	110	98	0	566	30	16	15	37	1.90
14966061--14966164	44	2.5	41	76	18	99	32	2	26	37	1.72
14966275--14966472	59	3.4	59	71	13	185	53	3	0	42	1.22
14966304--14966538	117	2.0	119	93	2	384	51	4	1	42	1.31
14966298--14966535	120	2.0	119	93	2	408	51	4	1	42	1.30
14967925--14968028	49	2.1	49	92	0	172	49	10	7	32	1.66
14977761--14977936	87	2.0	88	94	1	309	28	17	18	35	1.94
14979639--14979689	16	3.2	16	80	0	66	29	21	3	45	1.70
14979733--14979768	16	2.2	16	90	0	54	41	2	25	30	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14979949--14979977	14	2.1	14	100	0	58	62	0	0	37	0.96
14980344--14980407	29	2.3	27	84	7	76	64	0	0	35	0.94
14991977--14992007	11	2.8	11	95	0	53	29	3	48	19	1.64
14995398--14995440	11	4.0	11	84	3	61	30	2	46	20	1.63
14995398--14995440	21	2.0	21	90	4	68	30	2	46	20	1.63
15005330--15005399	20	3.8	18	67	17	54	62	4	2	30	1.28
15005829--15005902	31	2.4	31	82	10	89	63	2	0	33	1.09
15017113--15017167	24	2.2	25	83	6	67	58	10	14	16	1.64
15020595--15020640	23	2.0	23	95	0	83	34	23	0	41	1.55
15021908--15021955	24	2.0	24	95	0	87	20	14	25	39	1.91
15025130--15025169	16	2.5	16	84	11	55	40	2	17	40	1.63
15033718--15033772	22	2.5	22	80	11	76	25	30	23	20	1.98
15037038--15037072	17	2.0	17	88	5	52	45	0	0	54	0.99
15037049--15037107	31	1.9	31	89	6	93	38	1	0	59	1.08
15040407--15040476	19	3.7	19	80	1	79	28	7	1	62	1.30
15040501--15040566	19	3.4	19	80	2	78	25	3	1	69	1.11
15040407--15040566	10	16.7	9	65	18	56	31	5	1	62	1.24
15043350--15043414	15	4.1	15	80	13	60	55	1	1	41	1.18
15043340--15043414	32	2.5	29	75	12	78	50	1	2	45	1.24
15043350--15043414	32	2.1	31	85	2	85	55	1	1	41	1.18
15043350--15043407	15	3.8	14	80	15	62	53	1	1	43	1.21
15048187--15048253	18	3.6	18	84	7	89	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15048165--15048268	38	2.8	38	83	1	129	51	0	0	47	1.07
15048186--15048261	19	4.1	18	77	15	75	46	0	0	53	1.00
15053957--15054015	26	2.3	25	80	5	64	32	10	11	45	1.74
15058947--15059008	26	2.4	26	83	0	79	33	14	11	40	1.82
15060105--15060169	28	2.2	30	81	13	89	40	4	12	43	1.63
15060117--15060173	28	2.0	28	100	0	114	35	3	10	50	1.54
15060954--15061035	30	2.8	29	87	3	119	40	3	20	35	1.70
15067451--15067519	25	2.7	25	76	12	70	24	26	18	30	1.98
15067639--15067768	62	2.1	62	100	0	260	43	12	14	30	1.82
15072486--15072521	19	1.9	18	88	5	54	16	11	0	72	1.12
15073311--15073351	18	2.3	18	91	0	64	31	7	0	60	1.24
15073286--15073351	3	22.0	3	73	11	55	31	4	1	62	1.25
15077934--15077990	25	2.3	25	78	0	69	28	24	19	28	1.98
15079408--15079505	24	4.0	24	76	7	90	20	27	17	34	1.95
15079545--15079592	24	2.0	23	88	4	69	18	16	20	43	1.88
15079571--15079679	49	2.2	50	83	3	132	20	22	19	38	1.93
15079571--15079692	25	5.0	25	71	13	83	18	22	19	39	1.93
15083812--15084058	76	3.2	76	83	0	314	24	18	21	36	1.95
15083812--15084058	36	6.5	39	70	14	138	24	18	21	36	1.95
15085570--15085604	17	2.1	17	88	0	52	54	0	14	31	1.40
15085677--15085703	13	2.1	13	100	0	54	29	0	37	33	1.58
15090990--15091028	20	1.9	21	89	5	62	25	7	20	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15097005--15097064	31	1.9	31	89	0	93	33	13	8	45	1.73
15097777--15097830	6	9.0	6	97	0	99	81	0	0	18	0.69
15097915--15097959	19	2.4	19	88	7	65	37	0	2	60	1.09
15100594--15100651	22	2.9	18	75	20	62	31	5	12	51	1.61
15101043--15101118	33	2.3	33	83	0	89	26	1	48	23	1.59
15104191--15104229	16	2.4	16	100	0	78	25	0	41	33	1.56
15104253--15104667	211	2.0	210	90	2	663	38	14	10	35	1.81
15107246--15107307	31	2.0	32	96	3	117	43	14	9	32	1.78
15111966--15112012	21	2.2	21	88	0	67	2	10	17	70	1.26
15111961--15112036	33	2.3	33	97	0	143	1	10	14	73	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126