genome.fa.s14.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  120  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37140273--37140332	17	3.5	17	81	2	57	70	1	28	0	0.97
37141145--37141201	19	3.1	19	85	10	82	43	8	10	36	1.70
37141145--37141229	17	4.8	17	81	11	73	34	9	12	43	1.75
37141153--37141290	18	7.7	18	75	14	108	30	13	12	44	1.80
37141145--37141273	35	3.7	34	83	6	134	32	12	11	43	1.78
37151948--37151987	8	4.9	8	84	3	53	85	10	2	2	0.80
37151948--37151994	24	2.0	25	91	8	80	85	8	4	2	0.81
37152864--37153141	77	3.6	77	91	2	443	29	16	20	34	1.94
37153146--37153541	81	5.0	81	91	2	622	28	17	19	34	1.95
37154661--37154699	14	2.7	14	92	4	60	74	7	15	2	1.15
37154675--37154724	20	2.3	22	86	10	68	78	4	16	2	1.00
37154816--37154868	4	12.2	4	81	15	61	73	0	26	0	0.83
37154816--37154883	18	3.9	18	78	14	72	72	0	27	0	0.85
37154821--37154913	32	2.9	32	80	13	104	73	0	26	0	0.84
37154816--37154882	22	3.0	22	81	16	77	73	0	26	0	0.84
37154819--37154913	7	12.4	7	73	15	55	73	0	26	0	0.83
37162639--37162682	23	1.9	23	86	9	63	36	13	9	40	1.76
37163431--37163462	3	10.7	3	93	0	55	68	3	0	28	1.04
37165692--37165779	44	2.0	44	100	0	176	38	27	11	22	1.88
37169749--37169797	12	4.0	12	89	5	71	2	0	12	85	0.68
37169749--37169796	7	7.4	7	82	15	59	2	0	10	87	0.62
37169749--37169796	19	2.5	19	87	9	71	2	0	10	87	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37173608--37173804	98	2.0	98	94	0	349	37	25	9	27	1.87
37176396--37176586	98	1.9	98	95	0	346	37	24	10	27	1.89
37183216--37183268	7	7.9	7	79	8	65	69	0	15	15	1.19
37183216--37183268	20	2.7	20	84	0	79	69	0	15	15	1.19
37184678--37184881	44	4.6	44	68	13	157	26	19	25	28	1.99
37184631--37185371	134	5.6	135	77	10	577	30	20	22	27	1.98
37184766--37185418	44	14.8	44	70	11	320	30	19	21	28	1.98
37184858--37185411	266	2.1	265	93	1	948	30	19	21	28	1.98
37185124--37185493	175	2.1	175	90	2	591	31	18	20	29	1.97
37185521--37186059	44	12.6	44	74	12	369	30	22	22	23	1.99
37185734--37186170	127	3.4	127	93	1	716	32	24	20	22	1.98
37185521--37186149	44	14.7	43	73	10	351	31	22	22	23	1.98
37196937--37196965	2	14.5	2	100	0	58	51	0	48	0	1.00
37198519--37198579	17	3.6	16	77	14	61	57	0	1	40	1.08
37198519--37198631	9	12.2	9	71	16	54	55	0	0	43	1.05
37198520--37198600	35	2.3	36	83	10	105	59	0	1	39	1.05
37198526--37198587	26	2.3	26	83	8	72	61	0	0	38	0.96
37198562--37198621	20	2.9	20	73	14	59	51	0	0	48	1.00
37198560--37198631	20	3.5	20	70	10	56	54	0	0	45	0.99
37232357--37232581	40	5.7	40	81	5	197	26	27	20	25	1.99
37232513--37232590	40	1.9	41	82	10	97	26	28	20	24	1.99
37237759--37237856	50	2.0	50	95	2	180	15	20	28	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37239041--37239157	61	1.9	61	89	3	182	18	29	27	23	1.98
37239328--37239358	15	2.1	15	100	0	62	19	19	45	16	1.86
37242879--37242986	54	2.0	54	98	0	207	24	16	36	23	1.94
37243202--37243338	69	2.0	68	95	1	247	26	25	27	20	1.99
37244534--37244718	79	2.3	81	83	7	227	24	22	27	24	2.00
37244535--37244718	40	4.6	40	82	9	207	25	22	27	24	2.00
37244587--37244751	79	2.1	79	83	6	201	26	21	27	24	1.99
37244851--37245150	150	2.0	150	98	0	573	31	12	22	34	1.91
37247138--37247187	17	2.9	17	93	0	91	44	6	26	24	1.76
37276663--37276771	51	2.1	52	89	1	166	28	19	7	44	1.77
37281068--37281152	27	3.2	26	88	3	116	28	23	17	30	1.97
37300346--37300386	17	2.4	17	91	0	64	56	9	14	19	1.66
37300522--37300568	16	2.9	16	75	12	60	44	0	10	44	1.38
37305525--37305558	18	1.9	18	88	5	52	20	26	41	11	1.87
37309521--37309565	22	2.1	21	84	12	56	35	0	11	53	1.37
37309544--37309590	16	2.9	16	75	12	60	44	0	10	44	1.38
37314816--37314840	11	2.3	11	100	0	50	24	52	0	24	1.48
37315639--37315668	2	15.0	2	100	0	60	0	50	0	50	1.00
37321213--37321420	91	2.3	91	92	0	335	45	3	4	46	1.39
37321335--37321395	28	2.2	28	85	5	81	45	0	3	50	1.17
37321253--37321395	44	3.2	43	69	20	121	46	2	3	48	1.31
37321447--37321635	59	3.2	57	67	19	143	41	3	4	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37321474--37321672	66	3.2	64	66	19	177	40	3	7	49	1.45
37321436--37321733	120	2.5	120	94	1	526	42	2	5	50	1.38
37321509--37321696	61	3.1	61	70	14	208	42	1	7	48	1.40
37321561--37321612	15	3.6	15	80	12	56	44	0	1	53	1.11
37321510--37321693	59	3.1	59	67	22	175	41	1	7	48	1.41
37321690--37321731	15	2.7	16	82	14	52	45	0	2	52	1.13
37321681--37321722	15	2.9	15	82	10	52	47	0	0	52	1.00
37324361--37324412	24	2.2	24	89	0	77	55	9	1	32	1.43
37326327--37326378	24	2.2	24	85	0	68	57	9	1	30	1.42
37334814--37334890	29	2.6	29	83	4	91	48	12	12	25	1.78
37339201--37339319	45	2.6	45	81	2	132	26	15	15	42	1.87
37339300--37339341	22	1.9	22	100	0	84	23	14	14	47	1.80
37339323--37339433	44	2.5	45	88	1	161	21	20	15	42	1.89
37339323--37339485	45	3.7	44	81	6	159	22	19	14	43	1.87
37357289--37357429	31	4.6	31	67	13	85	41	7	16	34	1.77
37357288--37357429	63	2.3	60	85	6	178	41	7	16	34	1.77
37364014--37364045	15	2.1	15	94	0	55	50	0	0	50	1.00
37366451--37366506	3	18.7	3	89	7	87	71	0	28	0	0.86
37379659--37379690	15	2.1	15	100	0	64	40	25	0	34	1.56
37398473--37398522	26	1.9	26	91	0	82	38	6	18	38	1.75
37400284--37400322	20	2.0	20	89	0	60	69	5	0	25	1.09
37417234--37417264	14	2.2	14	100	0	62	35	19	22	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37418425--37418498	3	24.3	3	97	2	139	66	0	1	32	1.00
37418709--37418743	18	1.9	17	88	11	52	28	0	11	60	1.32
37428443--37428490	22	2.2	22	85	7	62	31	0	39	29	1.57
37438835--37438894	31	2.0	31	86	3	86	51	11	5	31	1.60
37439122--37439551	215	2.0	215	100	0	860	37	18	13	30	1.90
37444990--37445288	32	9.4	32	76	6	250	36	20	21	21	1.95
37445010--37445291	64	4.4	64	79	7	322	36	21	21	21	1.96
37445010--37445289	96	2.9	94	78	6	287	36	21	21	21	1.96
37445291--37445344	26	2.1	26	92	0	90	42	22	14	20	1.88
37445326--37445391	27	2.5	26	80	9	71	34	21	22	21	1.96
37445459--37445541	24	3.5	23	80	4	85	46	24	7	21	1.76
37445579--37445787	27	7.7	27	85	0	247	22	21	20	35	1.96
37445582--37445788	81	2.6	81	87	0	288	22	21	19	36	1.95
37450193--37450229	10	3.8	10	92	3	58	64	5	0	29	1.15
37466099--37466147	22	2.2	22	81	0	62	22	24	28	24	1.99
37467529--37467706	27	6.6	27	84	3	205	29	28	15	26	1.96
37467550--37467705	82	1.9	81	88	3	233	29	28	15	26	1.96
37475593--37475770	27	6.6	27	81	3	169	28	28	16	26	1.97
37475614--37475769	82	1.9	81	84	3	206	28	28	16	26	1.97
37477014--37477077	24	2.7	24	69	11	60	18	21	3	56	1.56
37479074--37479120	24	2.0	24	91	8	78	2	21	4	72	1.12
37480425--37480490	13	5.1	13	90	0	96	31	7	27	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37480480--37480948	234	2.0	234	98	0	911	42	3	10	44	1.54
37480904--37481000	31	2.9	32	73	18	83	50	1	2	46	1.20
37481478--37481508	6	5.2	6	92	0	53	35	3	16	45	1.63
37485971--37486802	410	2.0	414	96	2	1528	30	16	21	31	1.96
37487711--37487763	18	3.0	17	91	5	79	39	1	1	56	1.21
37488007--37488103	24	4.1	24	83	2	124	25	23	0	50	1.49
37488007--37488101	47	2.0	47	97	0	181	25	24	0	50	1.49
37494512--37494536	12	2.1	12	100	0	50	0	0	48	52	1.00
37494603--37494656	26	2.1	26	100	0	108	11	7	35	46	1.67
37499498--37499575	32	2.4	32	83	8	88	21	24	33	20	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126