genome.fa.s14.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  97  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29536089--29536157	24	2.8	26	78	8	72	42	18	17	21	1.90
29536335--29536396	24	2.7	23	82	2	61	27	17	29	25	1.98
29536721--29536750	10	2.8	11	90	10	53	36	26	0	36	1.57
29544003--29544078	9	8.4	9	71	15	59	28	2	1	67	1.12
29543998--29544047	19	2.7	19	84	3	75	32	4	0	64	1.12
29543998--29544053	28	2.1	26	83	6	67	32	3	0	64	1.11
29549662--29549697	2	18.0	2	88	0	54	2	52	0	44	1.15
29562719--29562749	16	1.9	16	93	0	53	19	12	6	61	1.53
29562843--29563154	92	3.4	92	99	0	615	24	4	22	48	1.69
29565670--29565703	16	2.2	15	94	5	59	23	2	0	73	0.97
29567483--29567610	60	2.2	60	92	1	213	42	15	21	20	1.89
29569172--29569363	95	2.0	95	92	2	323	29	26	15	29	1.96
29595238--29595271	10	3.4	10	91	0	50	52	0	5	41	1.25
29595783--29595826	20	2.2	20	88	8	63	29	2	0	68	1.02
29595783--29595838	20	2.8	21	81	5	62	26	3	3	66	1.25
29595894--29595969	40	1.9	40	88	0	116	26	28	13	31	1.93
29613216--29613275	17	3.3	18	74	9	50	66	3	0	30	1.07
29615370--29615740	125	3.0	125	93	0	627	29	15	22	32	1.95
29618830--29618897	17	3.8	17	71	16	57	48	1	5	44	1.36
29618716--29618959	116	2.1	116	94	1	427	44	6	9	39	1.64
29618985--29619865	68	13.0	67	76	14	598	26	0	25	48	1.54
29618962--29619865	91	10.0	91	81	10	932	26	0	25	48	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29618954--29619861	23	40.2	23	76	13	777	26	0	25	48	1.53
29619904--29619951	25	1.9	25	100	0	96	39	10	0	50	1.37
29620281--29620316	18	2.0	18	88	0	54	38	11	27	22	1.88
29620959--29620983	7	3.6	7	100	0	50	60	12	0	28	1.32
29621154--29621191	20	1.9	20	84	10	51	55	7	2	34	1.43
29622082--29622124	11	3.8	11	78	6	50	60	0	0	39	0.97
29622130--29622171	11	3.8	11	87	0	57	47	7	26	19	1.74
29622126--29622169	22	2.0	21	91	4	70	43	6	31	18	1.76
29626692--29626723	15	2.1	15	94	0	55	68	0	25	6	1.12
29627155--29627208	20	2.8	20	82	2	74	59	5	1	33	1.31
29647190--29647214	10	2.5	10	100	0	50	64	8	0	28	1.22
29647450--29647518	20	3.5	20	80	7	77	43	5	8	42	1.59
29647434--29647519	40	2.2	40	86	0	118	41	4	9	44	1.57
29653805--29653860	29	1.9	29	85	7	78	53	8	0	37	1.32
29655583--29655621	18	2.1	19	86	13	55	28	17	12	41	1.87
29663050--29663092	2	21.5	2	100	0	86	0	48	0	51	1.00
29666966--29667012	18	2.8	18	84	9	64	31	4	4	59	1.36
29666973--29667013	18	2.3	18	95	0	73	21	4	4	68	1.28
29675124--29675351	114	2.0	114	99	0	447	28	5	41	24	1.78
29675368--29675414	25	2.0	23	87	8	67	40	0	2	57	1.11
29692643--29692677	16	2.1	17	89	5	54	42	11	0	45	1.40
29695560--29695659	49	2.0	49	94	0	173	39	33	9	19	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29695560--29695635	25	3.1	25	64	17	68	38	35	10	15	1.82
29700726--29700757	11	2.9	11	95	0	55	40	12	9	37	1.75
29703561--29703664	43	2.4	43	85	6	131	32	27	16	23	1.96
29704860--29704891	16	1.9	17	93	6	57	81	3	15	0	0.82
29705635--29705713	3	25.7	3	73	5	59	36	6	1	55	1.33
29705646--29705714	24	3.0	23	81	8	77	39	7	1	52	1.38
29710564--29710616	6	8.5	6	83	8	52	73	0	20	5	1.03
29710564--29710616	26	2.1	25	89	3	79	73	0	20	5	1.03
29710570--29710611	19	2.2	20	87	12	61	76	0	19	4	0.96
29710564--29710616	13	4.2	12	83	9	61	73	0	20	5	1.03
29710961--29711005	22	2.1	22	87	4	65	75	4	13	6	1.15
29712344--29712392	24	2.0	24	96	0	89	38	30	14	16	1.88
29712260--29712479	111	2.0	111	95	0	395	31	24	21	21	1.98
29712368--29713134	87	8.8	87	92	0	1146	29	22	22	24	1.99
29713380--29713474	44	2.2	44	80	3	102	30	21	23	25	1.99
29714425--29714457	16	2.0	17	94	5	59	78	0	15	6	0.93
29715176--29715241	3	21.7	3	75	3	51	37	6	1	54	1.34
29735719--29735747	6	4.8	6	100	0	58	68	0	31	0	0.89
29737031--29737074	11	4.1	11	85	5	54	52	0	0	47	1.00
29737989--29738182	99	2.0	99	88	2	291	36	11	10	41	1.76
29739361--29739402	11	3.8	11	87	0	57	21	19	7	52	1.69
29739564--29739617	15	3.4	15	76	14	54	27	1	5	64	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29741694--29741741	25	1.9	25	100	0	96	45	0	14	39	1.45
29741784--29742243	23	20.2	23	78	11	439	48	25	0	25	1.53
29741784--29742243	114	4.0	115	84	7	584	48	25	0	25	1.53
29741780--29742244	68	6.8	67	80	12	472	48	25	0	25	1.53
29741784--29742243	91	5.0	91	81	11	507	48	25	0	25	1.53
29742238--29742597	116	3.1	115	92	1	603	39	8	6	44	1.63
29742414--29742597	55	3.2	54	66	14	145	40	8	5	44	1.60
29742356--29742544	61	3.2	61	65	14	169	40	8	7	42	1.64
29744783--29745130	124	2.8	124	92	0	572	33	20	16	29	1.95
29747644--29747670	6	4.5	6	100	0	54	55	14	14	14	1.70
29752010--29752045	12	2.9	13	88	12	58	69	0	0	30	0.89
29760879--29760906	6	4.7	6	100	0	56	14	50	0	35	1.43
29765503--29765545	22	2.0	22	81	9	52	55	4	13	25	1.58
29768489--29768521	3	11.0	3	100	0	66	33	0	0	66	0.92
29775761--29775804	22	2.0	22	86	8	63	34	0	0	65	0.93
29778358--29778382	6	4.2	6	100	0	50	16	0	0	84	0.63
29786391--29786427	4	9.2	4	93	0	65	27	0	24	48	1.51
29789268--29789445	51	3.5	51	75	5	155	24	14	28	33	1.94
29789261--29789445	101	1.8	102	87	3	275	24	14	27	32	1.94
29789449--29789543	45	2.1	45	94	3	165	28	18	23	29	1.98
29792653--29792683	3	10.3	3	100	0	62	64	0	35	0	0.94
29793740--29793778	20	2.0	20	89	0	60	53	7	0	38	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29798269--29798320	22	2.3	23	93	3	88	42	0	21	36	1.53
29798946--29799017	27	2.6	27	84	8	92	34	6	5	52	1.52
29800151--29800203	21	2.7	21	80	11	67	26	20	20	32	1.98
29800153--29800204	18	2.7	19	82	8	61	26	21	19	32	1.97
29800702--29800748	24	1.9	25	82	4	60	55	2	4	38	1.31
29804547--29804597	21	2.4	21	83	3	66	7	5	7	78	1.09
29805021--29805250	120	1.9	120	84	0	307	32	20	15	31	1.94
29815331--29815435	50	2.1	50	96	0	192	54	5	1	38	1.35
29815702--29815736	18	1.9	18	100	0	70	22	11	37	28	1.89
29815999--29816025	14	1.9	14	100	0	54	22	0	11	66	1.22
29820071--29820146	31	2.3	34	74	19	81	11	11	0	76	1.03
29830340--29830407	30	2.2	31	86	2	93	27	11	14	45	1.80
29830428--29830536	45	2.4	45	81	3	139	26	19	12	41	1.87
29845302--29845339	19	2.0	20	89	5	60	60	2	0	36	1.11
29850702--29850752	21	2.4	21	83	3	57	62	11	0	25	1.29
29854007--29854061	25	2.2	25	80	3	67	60	5	0	34	1.20
29854160--29854202	22	2.0	22	90	0	68	60	16	16	6	1.56
29860108--29860146	5	7.6	5	82	5	51	35	0	23	41	1.55
29868304--29868364	32	1.9	32	90	3	97	19	19	6	54	1.66
29881037--29881168	60	2.2	60	86	0	183	37	15	11	36	1.83
29881054--29881191	60	2.3	59	82	5	152	33	14	11	40	1.82
29882731--29882790	28	2.1	29	87	3	86	41	1	3	53	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29883738--29883889	81	1.9	80	98	1	295	26	11	3	57	1.52
29884557--29884605	25	2.0	25	84	8	64	24	6	4	65	1.33
29887108--29887172	31	2.1	31	83	11	80	52	6	18	23	1.67
29890086--29890144	12	4.9	12	71	22	52	50	1	0	47	1.11
29890456--29890495	19	2.1	19	90	0	62	35	22	15	27	1.94
29895309--29895395	42	2.1	42	88	0	129	13	17	21	47	1.82
29897235--29897377	40	3.6	40	76	9	141	31	24	16	27	1.96
29904097--29904123	13	2.1	13	100	0	54	55	7	0	37	1.28
29905647--29905691	23	2.0	23	82	8	56	44	8	2	44	1.47
29908845--29908931	28	3.1	28	69	17	74	43	1	2	52	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126