genome.fa.s14.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  16  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4709688--4709820	7	18.6	7	73	13	67	47	31	0	21	1.51
4709688--4709820	14	9.3	14	72	16	85	47	31	0	21	1.51
4709689--4709799	29	3.9	29	73	12	86	47	32	0	19	1.50
4709778--4709815	15	2.6	15	83	4	51	44	39	0	15	1.47
4709688--4709866	21	8.3	21	69	16	91	46	31	1	21	1.59
4709830--4709878	14	3.5	14	80	0	53	46	32	0	20	1.51
4717403--4717448	9	5.1	9	94	0	83	45	13	10	30	1.77
4718475--4718500	5	5.2	5	100	0	52	19	19	19	42	1.90
4722897--4723082	93	2.0	93	100	0	372	22	21	15	40	1.90
4725711--4726047	33	9.7	33	69	24	155	30	27	20	20	1.98
4725823--4725875	27	2.0	27	96	0	97	28	30	24	16	1.97
4725747--4725948	102	2.0	103	93	1	343	31	28	20	19	1.97
4725850--4726025	75	2.4	74	90	4	273	31	26	20	21	1.98
4725720--4726062	177	1.9	177	91	2	564	31	28	19	20	1.97
4726000--4726049	26	1.9	26	100	0	100	28	32	24	16	1.96
4728405--4728448	22	1.9	24	81	9	56	15	25	20	38	1.92
4742540--4742671	71	1.9	71	85	0	183	37	15	19	28	1.92
4742721--4743147	72	5.8	72	88	4	604	31	16	19	32	1.94
4742721--4744038	145	9.3	146	76	12	875	30	16	19	33	1.94
4743015--4743758	199	3.7	197	89	6	950	30	16	19	33	1.94
4743411--4744026	72	8.5	73	88	3	859	30	17	18	33	1.94
4743411--4744026	217	2.8	216	92	4	970	30	17	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4746557--4746625	24	2.8	24	74	10	68	53	1	2	42	1.24
4763616--4763699	42	2.0	42	100	0	168	26	23	19	30	1.98
4764391--4764507	30	3.9	29	77	11	94	44	3	21	30	1.69
4764406--4764507	30	3.4	30	83	2	125	44	3	21	30	1.70
4764505--4764540	16	2.2	17	90	5	56	19	0	2	77	0.88
4764505--4764540	17	2.1	17	89	0	54	19	0	2	77	0.88
4768032--4768081	26	1.9	26	100	0	100	16	24	32	28	1.96
4768060--4768370	33	8.7	33	69	22	175	20	20	26	31	1.98
4768056--4768231	75	2.3	75	90	4	275	21	20	26	31	1.98
4768206--4768258	27	2.0	27	96	0	97	16	24	30	28	1.97
4768133--4768334	102	2.0	103	96	1	370	19	20	27	32	1.97
4772851--4772926	38	2.0	38	97	0	143	30	18	22	28	1.97
4775526--4775551	5	5.2	5	100	0	52	42	19	19	19	1.90
4775641--4775665	5	5.0	5	100	0	50	40	20	20	20	1.92
4775527--4776025	114	4.3	114	98	1	962	30	16	18	34	1.93
4775755--4775779	5	5.0	5	100	0	50	40	20	20	20	1.92
4775869--4775893	5	5.0	5	100	0	50	40	20	20	20	1.92
4775983--4776008	5	5.2	5	100	0	52	38	19	19	23	1.93
4775957--4776008	26	2.0	26	81	7	61	34	15	26	23	1.94
4779718--4779761	15	2.9	15	82	0	52	27	36	0	36	1.57
4786533--4786595	32	2.0	31	100	0	117	47	15	19	15	1.81
4789386--4789422	18	2.0	19	89	5	58	67	18	10	2	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4789704--4789750	22	2.1	22	100	0	94	57	10	10	21	1.62
4795923--4795969	21	2.3	20	85	3	58	51	0	0	48	1.00
4804021--4804233	48	4.5	46	81	7	205	25	35	23	15	1.95
4804126--4804303	54	3.4	54	89	4	251	27	34	21	16	1.95
4804005--4804287	93	3.0	93	81	8	279	25	35	22	15	1.94
4809402--4809451	15	3.0	17	68	14	50	32	24	18	26	1.97
4809303--4809874	33	17.3	33	73	6	193	35	26	16	21	1.94
4809349--4809669	114	2.8	114	87	2	419	34	27	16	21	1.95
4809513--4809833	84	3.9	84	73	11	255	37	25	16	20	1.93
4809591--4809874	66	4.3	66	78	1	264	38	25	15	20	1.92
4809675--4809880	99	2.1	99	82	1	261	36	26	15	20	1.93
4814999--4815079	33	2.5	33	85	0	99	33	27	18	20	1.96
4815314--4815363	15	3.0	17	68	14	50	32	24	18	26	1.97
4815215--4815753	33	16.3	33	71	8	165	35	26	16	21	1.95
4815293--4815459	81	2.1	81	81	0	190	34	27	15	22	1.94
4815261--4815627	114	3.2	115	85	1	432	33	26	17	21	1.96
4815452--4815565	51	2.2	51	84	0	138	34	24	21	20	1.97
4815500--4815680	66	2.7	66	82	0	218	38	25	15	20	1.92
4815425--4815588	84	2.0	83	81	4	195	35	25	18	21	1.95
4815561--4815750	99	1.9	99	84	2	256	37	27	14	20	1.91
4818081--4818139	31	2.0	29	87	12	84	52	1	1	44	1.21
4818082--4818149	31	2.4	30	83	16	83	54	1	1	42	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4821522--4821550	3	9.7	3	100	0	58	31	0	0	68	0.89
4822635--4822678	20	2.2	20	84	8	54	65	6	15	11	1.44
4822643--4822769	20	6.4	20	73	10	82	60	5	14	19	1.53
4823060--4823108	20	2.4	21	86	6	73	51	14	16	18	1.77
4823396--4823449	20	2.7	20	78	16	58	55	5	16	22	1.62
4823803--4823841	19	2.0	20	85	9	55	69	2	0	28	1.02
4824603--4824749	74	2.0	74	89	5	226	28	17	21	32	1.96
4825270--4825320	25	2.0	25	81	7	59	37	1	1	58	1.20
4825932--4826029	33	3.0	33	84	0	115	31	27	19	21	1.97
4825983--4826131	51	2.9	51	87	0	217	28	24	21	24	1.99
4826220--4826284	33	2.0	33	87	6	96	26	29	26	18	1.98
4826238--4826302	33	2.0	33	87	0	94	23	32	27	16	1.96
4826244--4826344	51	2.0	51	88	0	148	25	29	25	18	1.98
4826346--4826456	33	3.4	33	79	0	105	41	25	13	19	1.88
4831786--4831876	44	2.1	44	97	0	173	26	21	10	40	1.87
4835866--4835954	44	2.0	44	95	0	160	30	15	20	33	1.94
4839036--4839075	20	2.0	20	100	0	80	30	25	15	30	1.95
4839563--4839676	58	2.0	58	92	3	194	35	11	30	22	1.90
4845624--4845730	54	2.0	53	96	0	187	37	24	18	18	1.93
4845998--4846105	56	1.9	56	92	0	180	30	14	25	29	1.95
4847309--4848178	100	8.7	100	95	0	1542	31	20	22	25	1.98
4848129--4848234	56	1.9	56	96	0	194	32	20	23	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4847921--4848422	256	2.0	255	87	2	729	31	20	23	25	1.98
4847311--4848422	50	22.1	50	66	7	345	31	20	22	25	1.98
4850806--4850850	12	3.7	12	82	5	54	51	11	4	33	1.58
4852778--4852834	22	2.7	21	81	5	60	40	17	3	38	1.67
4853603--4853965	45	8.1	45	79	4	349	29	22	17	31	1.96
4853601--4853957	90	4.0	90	82	2	414	29	22	17	30	1.96
4853606--4853960	135	2.6	136	85	4	475	30	21	17	30	1.96
4856665--4856733	25	2.7	24	84	8	75	56	4	17	21	1.58
4861351--4861425	19	3.8	19	89	6	114	37	13	12	37	1.82
4861328--4861423	19	4.7	21	81	13	103	39	13	10	36	1.79
4861328--4861423	40	2.3	41	87	7	133	39	13	10	36	1.79
4861612--4861953	170	2.0	168	93	2	587	44	6	6	42	1.56
4863041--4863152	33	3.4	33	77	2	109	35	23	18	22	1.96
4863199--4863769	33	17.3	33	72	5	303	35	24	15	24	1.94
4863208--4863433	100	2.3	99	85	0	290	38	23	15	22	1.93
4863416--4863764	99	3.5	99	86	1	448	35	24	16	24	1.95
4863720--4863759	15	2.4	17	88	12	57	37	27	10	25	1.88
4866987--4867012	12	2.2	12	100	0	52	7	15	30	46	1.74
4867001--4867133	40	3.3	39	78	8	126	32	20	23	24	1.98
4867188--4867348	41	4.0	41	91	1	270	18	24	29	27	1.98
4867188--4867348	81	2.0	82	93	1	279	18	24	29	27	1.98
4867297--4867399	50	2.1	50	92	0	170	19	25	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4868119--4868299	72	2.6	70	77	8	197	28	20	23	27	1.99
4868243--4868461	113	1.9	114	81	6	266	23	22	25	28	1.99
4868544--4868717	73	2.4	73	98	1	332	20	18	33	28	1.96
4868994--4869044	7	6.9	7	82	12	50	17	1	49	31	1.58
4868993--4869034	9	5.2	8	88	11	52	16	0	47	35	1.47
4869197--4869238	13	3.3	13	80	6	50	16	2	30	50	1.58
4869367--4869437	14	5.1	14	75	13	58	18	1	30	49	1.56
4869371--4869422	7	7.6	7	85	6	54	19	1	28	50	1.58
4869384--4869458	21	3.6	21	73	10	57	24	1	28	46	1.60
4869897--4870366	115	4.1	115	96	0	843	29	19	19	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126