genome.fa.s14.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  52  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15111963--15112024	12	5.4	12	77	11	58	1	11	16	70	1.23
15114265--15114309	23	2.0	23	86	4	65	68	0	6	24	1.13
15114454--15114538	39	2.2	38	76	21	88	35	1	7	56	1.34
15125913--15125993	35	2.3	35	100	0	162	50	9	19	19	1.75
15135757--15136043	153	1.9	153	90	1	459	38	17	5	39	1.72
15137809--15138378	285	2.0	285	100	0	1140	37	15	14	32	1.88
15139327--15139389	31	2.0	31	100	0	126	25	26	12	34	1.92
15143723--15143863	54	2.6	53	85	7	187	19	15	19	45	1.86
15143723--15143847	27	4.7	27	87	4	173	20	16	19	44	1.86
15143723--15143863	27	5.3	26	86	4	165	19	15	19	45	1.86
15146457--15146552	37	2.6	37	80	8	106	31	22	1	44	1.60
15149220--15149261	20	2.1	20	86	0	57	42	4	2	50	1.36
15152688--15152734	4	11.8	4	95	0	85	51	23	0	25	1.49
15157839--15157887	24	2.0	24	100	0	98	36	18	8	36	1.81
15167544--15167575	17	1.9	17	93	6	57	43	0	25	31	1.55
15174288--15174385	23	4.3	23	89	2	153	31	25	21	21	1.98
15174295--15174383	45	2.0	45	93	0	151	31	25	22	20	1.98
15178280--15178467	41	4.6	41	94	0	304	25	19	22	32	1.97
15178283--15178521	82	2.9	82	85	4	261	25	18	24	31	1.98
15178284--15178521	123	1.9	123	82	5	293	25	18	24	31	1.98
15181322--15181363	22	1.9	22	95	0	75	59	4	19	16	1.54
15181966--15182007	22	1.9	22	100	0	84	42	9	11	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15183145--15183306	4	38.8	4	72	19	61	69	0	30	0	0.94
15183147--15183302	10	15.9	10	69	17	71	68	0	30	0	0.94
15183184--15183298	31	3.8	31	72	11	85	69	0	29	0	0.94
15183143--15183275	41	3.3	41	88	5	182	68	0	30	0	0.95
15183136--15183307	65	2.7	61	81	9	159	67	0	31	0	0.95
15183143--15183306	41	4.0	41	86	7	178	68	0	30	0	0.94
15183671--15184215	157	3.4	156	76	16	557	51	6	10	31	1.63
15183802--15184273	157	3.0	161	76	14	562	51	8	10	30	1.65
15183671--15184270	317	1.9	317	93	0	1040	50	7	11	30	1.65
15184406--15185233	318	2.7	305	84	7	992	50	6	11	31	1.64
15185006--15185047	21	2.0	22	85	4	59	57	4	2	35	1.33
15185218--15185259	21	2.0	22	85	4	59	57	4	2	35	1.33
15190218--15190255	20	1.9	20	94	0	67	65	5	2	26	1.27
15202912--15203036	50	2.5	47	78	13	126	36	14	25	24	1.93
15204197--15204231	17	2.1	16	94	5	61	31	17	14	37	1.89
15207948--15208034	43	2.0	43	100	0	174	34	18	16	31	1.93
15223024--15223071	18	2.7	18	83	6	62	16	22	20	39	1.92
15228060--15228084	13	1.9	13	100	0	50	32	4	24	40	1.73
15230378--15230619	43	5.7	43	79	10	239	23	17	27	31	1.97
15230378--15230536	85	1.9	86	87	1	239	22	19	27	31	1.98
15230503--15230611	41	2.6	42	74	10	105	27	15	25	31	1.96
15234017--15234055	20	2.0	20	85	10	53	46	10	0	43	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15235729--15235776	24	2.0	24	100	0	96	25	16	25	33	1.96
15235732--15235786	24	2.3	24	87	0	74	29	14	21	34	1.93
15238273--15238299	14	1.9	14	100	0	54	55	7	14	22	1.64
15239134--15239383	24	10.7	24	72	13	155	34	5	4	55	1.43
15239138--15239358	45	4.8	46	69	13	55	34	6	4	54	1.46
15239100--15239373	69	4.0	69	75	13	217	35	5	4	54	1.44
15239332--15239369	17	2.2	18	85	4	51	36	0	0	63	0.95
15239304--15239563	127	2.1	127	96	0	477	37	6	5	50	1.51
15239454--15239512	24	2.4	23	77	22	59	35	1	3	59	1.24
15249146--15249188	18	2.4	18	88	0	59	44	44	2	9	1.49
15249292--15249376	9	9.4	9	78	0	89	25	12	22	38	1.90
15251988--15252023	15	2.5	14	86	8	54	44	8	0	47	1.33
15253229--15253281	19	2.8	19	80	11	72	16	7	7	67	1.38
15256306--15256391	45	1.9	45	90	0	136	40	13	20	24	1.89
15256544--15256635	27	3.4	27	77	5	114	33	10	28	27	1.90
15264129--15264230	27	3.8	27	85	0	141	32	18	29	19	1.96
15265408--15265456	11	4.3	12	82	14	52	69	14	10	6	1.35
15267381--15267409	9	3.0	10	90	10	51	17	20	0	62	1.33
15269149--15269269	31	3.9	31	85	0	161	40	6	19	33	1.77
15269201--15269255	17	3.4	17	68	14	53	40	5	21	32	1.76
15271316--15271487	86	2.0	86	98	0	335	33	16	13	37	1.87
15271910--15271946	9	4.0	9	86	6	56	54	13	0	32	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15273752--15273796	24	1.9	23	90	4	72	66	0	11	22	1.22
15278203--15278387	51	3.6	51	80	2	237	33	27	16	22	1.95
15278201--15278386	102	1.8	102	100	0	372	33	27	16	22	1.95
15300070--15300116	21	2.2	21	77	7	51	44	0	2	53	1.12
15300138--15300174	18	2.2	18	90	9	60	48	0	0	51	1.00
15300139--15300195	20	3.1	18	83	14	64	45	1	0	52	1.11
15304677--15304807	65	2.0	65	100	0	262	27	22	7	41	1.81
15306891--15306973	41	2.0	40	88	6	123	25	1	28	44	1.62
15307010--15307108	34	2.9	34	72	11	96	41	1	13	44	1.50
15307184--15307238	16	3.4	16	89	0	83	36	7	27	29	1.84
15307387--15307415	6	4.8	6	100	0	58	17	0	13	68	1.20
15307429--15307554	58	2.2	58	79	2	137	53	2	0	43	1.19
15309901--15310135	126	1.9	126	84	3	321	42	12	16	28	1.85
15313476--15313530	24	2.3	24	96	0	101	16	21	34	27	1.95
15313698--15313735	18	2.1	18	90	0	58	42	10	23	23	1.85
15315486--15315546	32	1.9	32	83	6	79	39	1	27	31	1.66
15324214--15324249	18	1.9	19	88	5	56	80	11	0	8	0.90
15324294--15324343	20	2.5	20	87	6	66	82	0	18	0	0.68
15324288--15324344	26	2.2	24	84	9	69	78	0	19	1	0.83
15324282--15324343	6	9.7	6	81	16	54	79	0	17	3	0.87
15324294--15324343	7	7.4	7	82	8	59	82	0	18	0	0.68
15324312--15324343	13	2.3	15	84	15	50	87	0	12	0	0.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15324663--15324692	15	2.0	15	93	0	51	56	10	13	20	1.65
15325201--15325241	7	6.0	7	88	5	66	68	2	14	14	1.32
15326104--15326535	216	2.0	216	100	0	864	32	20	25	21	1.98
15326500--15326549	21	2.4	21	89	0	73	36	18	44	2	1.61
15326869--15327096	43	5.3	43	84	2	278	32	19	25	22	1.98
15336255--15336295	21	2.0	21	85	0	55	19	31	12	36	1.89
15341237--15341272	17	2.1	17	89	5	54	66	0	11	22	1.22
15343963--15344014	19	2.8	18	83	13	61	53	3	0	42	1.19
15349331--15349447	41	2.9	41	87	3	141	35	29	18	15	1.92
15349346--15349477	38	3.4	38	86	5	149	35	31	18	13	1.90
15350899--15350932	3	11.3	3	100	0	68	0	0	32	67	0.91
15364264--15364294	16	1.9	16	100	0	62	32	6	38	22	1.80
15364521--15364562	15	2.7	16	82	14	52	52	2	0	45	1.13
15364530--15364571	15	2.9	15	82	10	52	52	0	0	47	1.00
15364640--15364691	15	3.6	15	80	12	56	53	1	0	44	1.11
15364781--15364815	18	2.0	17	88	5	52	54	0	0	45	0.99
15364527--15364935	120	3.4	120	95	1	714	50	5	2	42	1.37
15369016--15369085	29	2.5	28	75	9	70	67	4	1	27	1.18
15378790--15378834	19	2.4	19	88	0	63	26	13	20	40	1.89
15378799--15378837	19	2.1	19	95	0	69	25	17	12	43	1.85
15401075--15401109	18	1.9	18	88	0	52	34	37	0	28	1.58
15405537--15405713	88	2.0	88	93	2	302	27	25	10	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15409926--15410007	10	7.6	10	80	15	74	53	9	1	35	1.42
15413379--15413422	23	1.9	22	82	17	54	36	25	0	38	1.56
15413521--15413706	51	3.7	50	80	4	221	32	26	15	25	1.96
15413517--15413703	101	1.8	101	86	3	268	32	26	15	25	1.95
15416123--15416151	13	2.3	13	94	5	51	10	48	0	41	1.37
15419334--15419392	26	2.3	26	93	0	100	42	13	13	30	1.83
15419334--15419406	26	2.8	26	87	0	83	42	10	16	30	1.82
15427161--15427295	40	3.4	39	74	7	121	31	23	18	25	1.97
15428156--15428191	17	2.1	18	89	5	56	5	16	5	72	1.23
15428182--15428226	16	2.6	18	80	13	51	13	15	4	66	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126