genome.fa.s14.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  106  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32200538--32200572	18	2.0	17	88	5	52	54	0	0	45	0.99
32200519--32200920	120	3.3	119	92	2	642	50	3	1	43	1.32
32200656--32200692	16	2.2	17	86	13	51	54	0	2	43	1.14
32200921--32201015	48	2.0	48	93	0	163	30	6	6	56	1.49
32201406--32201434	2	14.5	2	100	0	58	51	48	0	0	1.00
32202430--32202535	53	2.0	53	98	0	203	50	13	17	18	1.78
32204513--32204558	21	2.2	21	84	0	56	52	2	2	43	1.25
32204614--32204663	25	2.0	25	84	7	66	58	0	0	42	0.98
32207941--32207969	14	2.0	15	93	6	51	41	0	0	58	0.98
32211745--32211977	29	8.1	29	75	6	159	25	12	19	42	1.87
32211745--32211971	58	3.9	59	77	7	198	26	12	19	41	1.86
32218269--32218355	2	43.5	2	97	0	165	50	0	49	0	1.00
32229127--32229154	3	9.3	3	100	0	56	32	0	0	67	0.91
32230792--32230851	18	3.3	18	79	9	68	68	3	0	28	1.05
32230792--32230899	18	5.8	18	73	14	67	67	3	1	26	1.17
32230824--32230898	9	8.0	10	72	16	54	68	2	2	26	1.17
32253627--32253688	11	5.6	11	80	0	61	9	3	46	40	1.53
32253627--32253688	22	2.8	22	82	0	70	9	3	46	40	1.53
32257707--32257863	29	5.5	28	73	13	88	42	21	14	21	1.89
32257735--32257918	29	6.3	29	74	8	142	40	19	15	24	1.91
32257820--32257935	29	4.0	28	79	8	117	36	18	15	29	1.92
32257938--32257997	26	2.3	26	85	0	75	40	18	18	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32261512--32261561	26	1.9	26	100	0	100	16	24	32	28	1.96
32261540--32261691	33	4.5	33	70	22	118	20	19	28	31	1.97
32261509--32261741	102	2.3	102	92	0	378	22	20	28	28	1.98
32271423--32271475	16	3.6	14	75	20	54	75	0	20	3	0.96
32271423--32271480	22	2.6	23	72	10	66	75	0	20	3	0.94
32271424--32271916	247	2.0	246	92	0	815	49	16	16	17	1.80
32275446--32275476	15	2.1	15	100	0	62	22	6	25	45	1.76
32281682--32281768	23	3.7	23	87	7	122	35	44	5	13	1.68
32282928--32282988	24	2.5	25	81	5	70	70	0	26	3	1.02
32289409--32289447	18	2.2	18	85	0	51	84	0	10	5	0.76
32296961--32297008	18	2.6	18	83	6	60	50	2	4	43	1.33
32297622--32297651	14	2.1	14	93	0	51	16	43	0	40	1.48
32299090--32299468	27	14.2	27	77	9	289	43	19	17	19	1.88
32299111--32299468	54	6.7	54	79	6	331	43	19	17	18	1.88
32299681--32299731	26	2.0	26	88	0	75	19	19	17	43	1.89
32305353--32305423	26	2.7	26	88	0	97	36	29	11	22	1.89
32305403--32305503	27	3.8	27	80	1	114	36	18	16	27	1.93
32307107--32307963	288	3.0	287	86	1	1126	29	17	18	33	1.94
32308936--32308980	19	2.4	17	80	20	54	57	2	13	26	1.48
32308942--32308987	19	2.3	21	85	11	69	58	4	17	19	1.55
32333177--32333384	27	7.6	27	92	3	326	27	13	28	30	1.94
32333177--32333384	82	2.5	82	92	3	337	27	13	28	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32333177--32333384	55	3.8	55	94	1	346	27	13	28	30	1.94
32341001--32341207	45	4.6	44	79	7	186	44	13	17	24	1.85
32341045--32341245	45	4.5	45	76	9	178	43	13	18	24	1.86
32341045--32341244	90	2.2	89	85	0	256	43	13	18	25	1.86
32342612--32343030	138	3.0	137	89	2	617	47	4	7	39	1.52
32342936--32342970	18	1.9	18	88	11	54	54	5	0	40	1.24
32353222--32353255	16	2.1	17	88	5	52	38	20	5	35	1.77
32354452--32354556	52	2.0	52	100	0	210	26	29	20	22	1.99
32362164--32362234	35	2.0	35	100	0	142	39	22	5	32	1.77
32371912--32372297	193	2.0	193	100	0	772	31	18	17	32	1.94
32376321--32376538	43	5.1	43	76	7	174	26	29	17	26	1.97
32376364--32376538	86	2.0	85	83	5	219	26	30	17	25	1.97
32379224--32379272	25	1.9	26	91	4	82	22	4	14	59	1.52
32379461--32379640	72	2.5	72	100	0	360	32	15	3	49	1.60
32379930--32380015	21	4.0	21	81	1	91	34	40	0	24	1.55
32379981--32380040	21	2.9	20	82	5	57	40	35	0	25	1.56
32380014--32380047	7	4.7	7	85	7	50	41	32	0	26	1.56
32379996--32380047	14	3.7	15	80	12	56	42	30	0	26	1.56
32380088--32380138	18	2.6	21	87	9	72	54	15	13	15	1.71
32380353--32380401	14	3.5	13	84	15	62	48	32	2	16	1.57
32380638--32380751	41	2.8	41	75	6	106	33	20	22	23	1.97
32380635--32380835	81	2.5	82	80	4	212	31	25	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32380682--32380835	41	3.8	41	85	1	211	28	29	20	21	1.98
32381012--32381037	12	2.2	12	100	0	52	46	30	15	7	1.74
32385180--32385302	49	2.5	51	74	12	121	26	23	26	23	2.00
32385564--32385602	12	3.2	12	85	0	51	51	5	23	20	1.67
32389776--32389898	49	2.5	51	74	12	121	26	23	26	23	2.00
32390160--32390198	12	3.2	12	85	0	51	51	5	23	20	1.67
32397606--32397644	12	3.2	12	85	0	51	53	5	23	17	1.63
32404929--32404965	14	2.6	14	100	0	74	21	8	21	48	1.76
32428950--32428980	15	2.1	15	100	0	62	48	6	0	45	1.28
32429419--32429461	18	2.4	17	85	11	59	53	0	0	46	1.00
32432057--32432986	465	2.0	465	99	0	1842	28	14	5	51	1.65
32437500--32437535	6	5.7	6	90	9	54	69	0	16	13	1.19
32438834--32439008	50	3.5	50	66	6	147	27	21	27	23	1.99
32438829--32439529	100	6.9	100	74	4	502	27	18	22	23	1.94
32438884--32439043	50	3.2	50	64	10	137	28	19	26	25	1.99
32438884--32439065	50	3.6	50	65	8	127	29	20	24	25	1.99
32438937--32439093	50	3.1	49	66	7	127	29	22	24	23	1.99
32439199--32439551	50	7.1	50	67	4	219	28	19	24	26	1.99
32439153--32439529	100	3.8	100	88	0	522	28	20	24	26	1.99
32439547--32439921	132	2.8	132	87	1	554	30	19	22	27	1.98
32439947--32440040	44	2.1	45	88	2	136	30	12	27	28	1.93
32440664--32440690	14	1.9	14	100	0	54	7	51	22	18	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32441817--32441870	16	3.1	19	79	10	62	42	9	0	48	1.35
32445177--32445221	18	2.5	19	82	7	58	44	11	0	44	1.39
32446442--32446502	29	2.1	30	81	9	72	37	4	6	50	1.50
32449520--32450361	434	1.9	434	91	1	1386	31	16	19	32	1.94
32457965--32458077	47	2.4	48	85	5	142	39	23	13	23	1.90
32460983--32461020	19	2.0	19	90	10	60	39	13	0	47	1.42
32461088--32461129	18	2.2	20	83	8	52	35	16	0	47	1.47
32463774--32463921	62	2.4	62	98	0	287	20	26	9	43	1.82
32466609--32466643	9	4.0	9	96	3	63	34	0	0	65	0.93
32466804--32467180	188	2.0	188	97	0	709	40	11	10	37	1.77
32482741--32482775	18	2.0	17	88	5	52	45	0	0	54	0.99
32482897--32482931	18	2.0	17	88	5	52	45	0	0	54	0.99
32482723--32483200	156	3.1	156	98	0	920	46	6	3	43	1.46
32483053--32483101	15	2.9	18	80	20	61	44	0	0	55	0.99
32483053--32483107	15	3.4	16	80	16	53	43	0	1	54	1.10
32483245--32483332	44	2.0	45	86	2	124	34	27	6	31	1.83
32483323--32483358	16	2.2	16	100	0	72	38	36	0	25	1.56
32484563--32484609	23	2.0	24	88	12	71	10	10	14	63	1.51
32491149--32491231	32	2.5	33	86	3	105	34	26	10	27	1.90
32492617--32492771	47	3.3	47	77	0	184	45	20	11	21	1.83
32521329--32521377	20	2.3	21	82	6	55	48	10	4	36	1.56
32526722--32526789	29	2.3	29	85	5	93	27	30	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32526611--32526938	174	1.9	174	97	0	620	30	24	14	29	1.95
32526891--32526969	29	2.7	30	82	13	110	29	30	15	25	1.96
32530969--32530994	3	8.7	3	100	0	52	0	0	30	69	0.89
32535540--32535571	13	2.5	13	94	0	55	62	9	18	9	1.52
32541049--32541118	26	2.8	25	71	20	67	48	22	0	28	1.51
32541059--32541101	22	2.0	22	86	9	61	48	20	0	30	1.50
32545859--32545888	13	2.3	13	94	0	51	40	0	16	43	1.48
32548106--32548152	23	2.1	23	84	7	62	51	12	4	31	1.59
32559090--32559352	40	6.6	39	86	4	278	25	27	21	25	1.99
32559090--32559352	120	2.2	119	82	4	307	25	27	21	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126