genome.fa.s14.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  79  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23837132--23837416	78	3.7	76	81	9	292	31	12	11	43	1.80
23837132--23837433	156	1.9	154	78	7	324	32	13	11	42	1.81
23837132--23837442	79	4.0	79	82	4	213	32	13	11	42	1.80
23837424--23837484	27	2.3	27	88	0	86	36	13	8	42	1.74
23849427--23849465	18	2.1	19	85	4	53	35	0	7	56	1.28
23852997--23853031	11	3.1	11	88	8	52	17	22	17	42	1.88
23852981--23853033	23	2.4	22	83	3	70	18	28	15	37	1.91
23852994--23853031	12	3.2	12	88	7	60	15	26	15	42	1.87
23853966--23854273	114	2.7	112	79	8	318	29	13	17	38	1.89
23858485--23858517	6	5.5	6	86	13	50	0	15	0	84	0.61
23858480--23858517	18	2.2	17	90	9	60	0	15	0	84	0.63
23862875--23863189	174	1.8	174	82	5	404	25	10	35	28	1.89
23867485--23867556	33	2.2	33	85	5	92	34	23	22	19	1.96
23867829--23867948	33	3.6	33	74	6	91	31	28	16	23	1.96
23875624--23875701	38	2.1	38	87	0	111	55	12	5	26	1.58
23878038--23878105	25	2.7	25	83	2	91	30	4	2	61	1.30
23878032--23878108	11	6.6	11	71	11	55	29	5	2	62	1.30
23878933--23878977	23	2.0	23	95	0	81	44	0	6	48	1.29
23882124--23882148	6	4.2	6	100	0	50	84	0	0	16	0.63
23885654--23885768	20	6.2	18	68	17	67	29	10	0	59	1.37
23890606--23890653	22	2.2	22	88	3	71	35	31	4	29	1.76
23890611--23890654	22	2.0	22	95	0	79	34	29	4	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23904491--23904560	27	2.6	27	84	4	79	31	18	10	40	1.84
23909738--23909769	13	2.6	13	85	14	50	56	9	12	21	1.64
23915183--23915222	20	2.1	19	90	9	64	57	5	2	35	1.34
23915430--23915472	20	2.2	20	86	0	59	41	9	9	39	1.69
23920343--23920383	19	2.2	19	86	8	57	78	2	4	14	1.03
23921516--23921543	6	4.7	6	100	0	56	71	0	14	14	1.15
23923276--23923326	20	2.5	20	93	0	84	33	21	17	27	1.96
23938638--23938690	23	2.3	23	83	0	70	22	18	28	30	1.98
23944866--23944922	19	2.7	22	84	10	66	36	8	15	38	1.79
23945126--23945170	23	2.0	23	81	0	54	22	0	15	62	1.33
23945856--23945881	3	8.7	3	100	0	52	0	0	30	69	0.89
23954056--23954146	23	4.0	23	94	0	164	34	24	26	15	1.95
23954052--23954157	46	2.3	46	84	9	155	33	24	24	16	1.96
23954150--23954235	23	3.7	23	95	0	154	33	22	23	20	1.97
23957124--23957169	23	2.0	23	86	0	65	65	2	2	30	1.16
23983577--23983667	45	2.0	45	85	2	121	37	28	6	27	1.82
23983648--23983733	16	5.2	16	94	2	145	36	38	1	24	1.63
24010108--24010174	33	2.0	33	94	0	116	35	10	10	43	1.73
24018304--24018332	6	4.8	6	100	0	58	86	13	0	0	0.58
24018589--24018640	21	2.5	20	76	14	61	40	13	21	25	1.89
24018864--24018905	19	2.3	19	87	4	59	52	0	0	47	1.00
24018911--24018947	19	2.0	19	89	5	58	40	0	5	54	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24025425--24025463	21	1.9	19	90	10	60	10	2	10	76	1.10
24027206--24027252	23	2.0	23	83	0	58	29	6	19	44	1.75
24027536--24027579	22	2.0	22	86	0	61	36	15	11	36	1.84
24028652--24028690	7	5.6	7	84	0	51	48	15	2	33	1.58
24028652--24028690	14	2.8	14	92	0	60	48	15	2	33	1.58
24035264--24035349	45	1.9	45	87	0	127	36	22	19	22	1.96
24041416--24041440	3	8.3	3	100	0	50	32	0	32	36	1.58
24045996--24046038	3	14.3	3	100	0	86	32	0	0	67	0.91
24047585--24047677	46	2.1	45	84	11	120	37	26	4	31	1.76
24047659--24047709	16	3.2	16	86	5	68	33	25	0	41	1.56
24050120--24050311	96	2.0	96	89	2	296	39	12	8	39	1.74
24054317--24055363	525	2.0	525	91	1	1679	33	17	14	34	1.90
24060752--24060790	20	2.0	20	85	10	53	17	23	5	53	1.63
24061083--24061183	50	2.0	50	86	0	139	20	30	21	26	1.98
24064094--24064305	113	1.9	113	82	2	264	26	24	22	26	2.00
24064928--24064963	17	2.1	17	89	0	54	75	2	13	8	1.15
24066382--24066479	48	2.0	48	100	0	196	35	22	12	29	1.91
24087406--24087713	43	7.3	42	72	12	220	23	16	24	36	1.94
24087406--24087674	43	6.3	43	75	8	248	23	15	24	36	1.94
24087437--24087721	85	3.4	85	89	1	430	23	16	24	35	1.95
24092891--24092940	26	2.0	24	88	7	73	24	30	0	46	1.53
24093157--24093451	51	5.8	51	73	7	235	29	27	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24093165--24093449	101	2.8	101	91	1	437	30	26	17	25	1.97
24096031--24096101	29	2.6	27	82	8	83	16	8	9	64	1.47
24096274--24096298	13	1.9	13	100	0	50	32	4	24	40	1.73
24097426--24097541	43	2.7	42	76	11	110	25	17	24	33	1.96
24118816--24118975	43	3.7	43	76	13	159	24	19	25	30	1.98
24122141--24122219	29	2.7	29	86	5	106	27	32	15	24	1.95
24133245--24133327	42	2.0	42	97	0	157	33	18	9	38	1.83
24134689--24135590	450	2.0	450	98	0	1750	33	24	15	26	1.95
24152825--24152895	28	2.5	28	83	0	88	19	15	15	49	1.80
24153023--24153394	109	3.4	110	82	1	462	23	27	12	37	1.90
24153821--24153876	27	2.1	27	89	0	85	23	10	30	35	1.89
24153829--24153886	27	2.1	27	83	0	71	24	17	27	31	1.97
24168539--24168726	57	3.3	57	82	4	195	32	18	23	25	1.97
24168572--24168657	28	3.0	28	66	14	68	36	17	20	25	1.95
24168693--24168749	28	2.0	28	86	6	80	28	17	22	31	1.97
24171858--24171936	37	2.1	37	90	0	122	25	31	18	24	1.98
24172055--24172465	47	8.7	47	97	0	750	29	30	8	32	1.86
24174994--24175205	40	5.3	40	87	2	228	23	28	21	26	1.99
24175027--24175205	80	2.2	80	91	2	279	22	27	21	27	1.99
24176449--24176674	40	5.7	40	89	4	305	26	27	21	24	1.99
24184311--24184404	48	2.0	48	83	12	122	38	27	14	19	1.91
24186826--24186919	48	2.0	48	83	8	120	40	23	12	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24188542--24188783	118	2.0	119	86	5	339	24	23	14	36	1.93
24193881--24193967	45	1.9	45	85	0	120	37	14	25	21	1.92
24199134--24199196	29	2.2	28	82	2	72	39	22	14	23	1.91
24199149--24199219	28	2.6	28	74	14	67	40	25	12	21	1.88
24204568--24204622	27	2.0	27	92	0	92	38	25	20	16	1.92
24211134--24211181	25	1.9	25	100	0	96	22	0	16	60	1.36
24211977--24212008	16	2.0	16	100	0	64	25	18	18	37	1.94
24215318--24215516	89	2.2	92	85	3	260	47	18	18	16	1.83
24216040--24216112	20	3.7	20	83	9	87	56	8	1	34	1.38
24217902--24217929	14	2.0	14	100	0	56	50	0	21	28	1.49
24229500--24233126	576	6.3	576	91	1	5754	35	16	18	28	1.93
24234323--24234370	25	2.0	24	84	15	64	37	18	2	41	1.63
24238618--24238669	25	2.1	25	85	0	68	26	11	42	19	1.85
24240066--24240109	23	1.9	23	90	0	70	45	25	2	27	1.65
24242499--24242585	27	3.3	27	90	1	140	45	21	14	17	1.84
24251370--24251402	16	2.1	16	100	0	66	39	18	18	24	1.92
24251597--24252259	329	2.0	329	97	0	1254	31	17	12	38	1.88
24256140--24256493	78	4.6	78	80	4	385	35	16	11	37	1.84
24266309--24266335	7	3.9	7	100	0	54	29	0	55	14	1.40
24266615--24267184	285	2.0	285	100	0	1140	39	11	12	35	1.81
24272440--24272506	10	6.9	10	83	13	95	38	1	0	59	1.06
24272656--24272694	21	1.9	21	94	5	71	30	23	10	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24274615--24274651	15	2.5	15	90	0	56	45	8	2	43	1.47
24274624--24274653	15	2.0	15	100	0	60	40	6	6	46	1.56
24278609--24279697	559	1.9	560	87	3	1611	33	16	14	35	1.89
24279690--24279732	7	5.9	7	78	10	50	16	48	0	34	1.46
24279690--24279738	16	3.1	16	85	8	57	14	48	0	36	1.44
24287024--24287587	282	2.0	282	98	0	1101	33	10	18	38	1.84
24289170--24289209	15	2.7	15	88	0	53	25	37	0	37	1.56
24289181--24289218	19	2.0	19	90	10	60	23	36	0	39	1.55
24290401--24290586	35	5.3	35	90	1	284	38	29	12	19	1.88
24303686--24303959	27	10.0	27	77	8	248	28	24	13	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126