genome.fa.s14.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  61  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17761176--17761327	37	4.0	36	87	7	196	32	5	15	46	1.69
17761333--17761415	9	8.8	9	82	10	85	22	7	28	40	1.81
17761325--17761414	29	3.2	29	90	3	139	24	7	27	40	1.83
17761325--17761415	38	2.4	37	83	8	121	24	7	27	40	1.82
17761443--17761524	29	2.7	30	72	9	78	35	10	17	36	1.85
17763250--17763446	98	2.0	98	90	0	313	37	21	9	31	1.86
17765078--17765119	17	2.5	17	88	0	57	2	16	38	42	1.61
17765820--17766362	44	12.5	44	69	13	209	27	22	20	29	1.99
17765388--17766362	217	4.5	218	88	0	1425	27	22	20	29	1.99
17765426--17766231	44	18.5	44	69	14	225	27	23	20	29	1.99
17765388--17766362	435	2.2	435	93	0	1628	27	22	20	29	1.99
17777984--17778249	133	2.0	133	96	0	496	40	19	15	25	1.90
17778266--17778462	98	2.0	98	92	0	331	37	21	10	30	1.87
17778340--17778623	141	2.0	141	97	1	534	36	19	7	36	1.79
17778685--17778985	149	2.0	150	98	0	577	47	8	11	32	1.70
17779559--17779727	87	1.9	87	91	0	275	22	33	25	18	1.97
17781116--17781157	17	2.5	17	88	0	57	2	16	38	42	1.61
17781858--17782400	44	12.5	44	69	13	209	27	22	20	29	1.99
17781426--17782400	217	4.5	218	88	0	1425	27	22	20	29	1.99
17781464--17782269	44	18.5	44	69	14	225	27	23	20	29	1.99
17781426--17782400	435	2.2	435	93	0	1628	27	22	20	29	1.99
17795032--17795075	21	2.1	21	100	0	88	63	4	18	13	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17795848--17795890	11	3.8	11	81	6	50	32	0	2	65	1.06
17798281--17798340	21	2.9	21	70	9	68	40	10	3	46	1.54
17799675--17799764	40	2.2	40	82	3	110	42	2	33	22	1.66
17799700--17799741	14	2.9	14	82	10	57	47	2	28	21	1.63
17800751--17800956	7	28.9	7	71	11	78	44	32	1	22	1.62
17800752--17800886	57	2.4	58	80	9	154	42	34	1	21	1.62
17801292--17801413	40	3.0	40	82	7	149	27	25	19	27	1.99
17801461--17801566	40	2.7	40	86	0	149	29	20	19	30	1.97
17801306--17801720	154	2.7	153	83	1	499	29	21	19	29	1.97
17801618--17801748	40	3.3	41	83	2	124	29	20	21	29	1.98
17801646--17801772	40	3.2	40	82	4	157	26	22	22	29	1.99
17810623--17810671	24	2.0	24	92	0	80	32	16	24	26	1.96
17810856--17810977	61	2.0	61	98	0	235	28	14	20	36	1.92
17824782--17824914	68	1.9	69	82	7	164	36	20	6	36	1.77
17824896--17824937	21	2.0	21	95	0	75	42	11	0	45	1.41
17824818--17825157	94	3.7	92	71	15	263	37	17	6	37	1.77
17825095--17825257	70	2.4	70	83	3	206	37	15	7	39	1.75
17825658--17825868	93	2.3	93	90	3	334	31	22	7	39	1.81
17829936--17830061	63	2.0	63	95	0	225	26	50	4	19	1.67
17830303--17830352	25	2.1	25	88	7	77	26	0	4	70	1.05
17837625--17837670	25	1.9	23	83	16	58	52	8	8	30	1.62
17841664--17841712	18	2.7	18	80	0	62	42	24	8	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17848627--17848679	26	2.0	26	100	0	106	39	7	33	18	1.79
17851464--17851488	11	2.3	11	100	0	50	48	0	36	16	1.46
17861683--17861730	22	2.2	22	85	7	62	27	2	27	43	1.66
17861612--17861740	54	2.4	52	81	2	150	29	1	22	46	1.61
17887935--17888027	47	2.0	48	84	2	125	33	17	18	31	1.94
17891919--17891962	22	2.0	22	81	0	52	56	2	0	40	1.11
17896356--17896416	26	2.4	25	81	5	68	47	14	6	31	1.70
17897735--17897785	12	3.9	13	75	15	52	31	1	0	66	1.03
17898242--17898308	31	2.2	31	91	0	116	16	17	5	59	1.56
17899228--17899335	22	5.0	22	70	11	80	20	13	19	46	1.84
17905799--17905931	67	2.0	67	96	0	248	54	3	7	35	1.44
17906550--17906626	19	3.7	21	73	13	59	41	14	5	38	1.68
17906588--17906696	19	5.7	19	86	0	155	38	12	9	39	1.76
17906588--17906689	38	2.7	38	92	0	177	39	11	8	40	1.73
17907023--17908311	132	9.8	131	96	1	1994	29	22	18	29	1.97
17907904--17908230	44	7.4	44	63	20	137	29	23	16	29	1.97
17914449--17914643	98	2.0	98	98	0	381	55	6	5	32	1.48
17915263--17915358	19	4.7	21	74	14	65	40	14	6	38	1.71
17915263--17915320	22	2.6	22	81	7	64	41	17	5	36	1.72
17915299--17915371	19	3.8	19	88	0	119	36	13	9	39	1.78
17916870--17916921	3	17.3	3	95	0	95	0	30	0	69	0.89
17918431--17918516	22	3.8	22	83	6	93	31	16	16	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17929144--17929340	105	1.9	108	88	3	301	28	18	18	33	1.95
17934987--17935688	86	8.1	87	86	2	797	28	23	23	24	2.00
17934987--17935688	173	4.0	175	85	3	814	28	23	23	24	2.00
17935262--17935397	43	3.2	42	63	22	102	25	19	26	27	1.99
17934987--17935685	259	2.7	261	84	2	852	28	23	23	24	2.00
17935697--17936064	132	2.8	131	84	4	472	29	17	24	28	1.98
17935744--17936084	132	2.6	133	88	2	474	31	16	24	28	1.96
17938116--17938313	105	1.9	106	88	4	301	29	19	19	32	1.96
17948594--17948633	18	2.2	18	90	0	62	40	15	12	32	1.84
17952237--17952347	43	2.6	42	84	2	143	28	27	18	25	1.98
17956138--17956183	21	2.2	21	84	0	56	30	34	0	34	1.58
17956064--17956310	130	1.9	132	80	5	293	40	28	1	29	1.66
17956270--17956310	21	2.0	21	85	0	55	26	48	0	24	1.51
17956759--17956911	41	3.7	41	78	2	164	28	27	20	23	1.99
17956949--17957078	40	3.3	40	82	5	140	19	21	21	37	1.94
17959288--17959359	20	3.5	20	76	9	65	15	15	18	51	1.77
17961918--17961973	28	2.0	28	100	0	112	42	10	10	35	1.74
17962500--17962547	14	3.3	14	77	11	51	58	4	0	37	1.18
17962502--17962548	16	3.1	15	76	8	51	59	4	0	36	1.17
17963161--17963190	4	7.2	4	96	3	51	50	0	0	50	1.00
17969884--17969908	12	2.1	12	100	0	50	44	0	0	56	0.99
17974043--17974102	6	10.0	6	92	0	102	16	36	0	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17974469--17974504	6	6.0	6	93	0	63	16	36	0	47	1.47
17973887--17974954	426	2.5	426	97	1	2023	32	19	6	41	1.76
17974895--17974972	6	13.0	6	97	0	147	16	34	0	48	1.47
17974469--17975395	468	2.0	469	95	1	1680	31	19	5	43	1.73
17975365--17975395	12	2.6	12	89	0	53	19	22	0	58	1.40
17979190--17979230	22	1.9	21	90	5	64	48	0	0	51	1.00
17986893--17986940	22	2.2	22	85	7	62	27	2	27	43	1.66
17986822--17986950	54	2.4	52	81	2	150	29	1	22	46	1.61
17999835--18000033	55	3.7	53	81	6	213	23	25	17	33	1.96
18000021--18000138	47	2.5	47	94	0	209	26	23	13	36	1.92
18000114--18000278	47	3.5	47	76	9	133	24	23	17	34	1.96
18000114--18000278	45	3.5	46	78	8	147	24	23	17	34	1.96
18006184--18006566	194	2.0	194	97	0	730	36	21	15	26	1.94
18006752--18006863	56	2.0	56	94	0	197	32	24	13	30	1.93
18007070--18007219	37	4.1	37	93	0	246	27	29	19	24	1.98
18007239--18007310	37	1.9	37	94	0	126	27	30	19	22	1.98
18007473--18007752	47	6.0	47	88	0	407	26	29	12	32	1.92
18008642--18008709	25	2.7	25	81	0	82	29	17	23	29	1.97
18010996--18012107	40	27.8	40	96	0	2010	25	28	22	23	1.99
18013333--18013477	37	3.9	37	97	0	263	25	31	19	23	1.98
18013624--18013758	48	2.8	48	95	0	243	30	28	7	33	1.85
18013776--18013851	24	3.2	24	62	23	61	25	30	13	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18013729--18013968	47	5.1	47	94	0	363	26	28	11	33	1.91
18013868--18013939	22	3.1	22	64	24	58	23	29	13	33	1.93
18015332--18015765	85	5.1	85	99	0	859	26	26	8	38	1.85
18024265--18024307	22	2.0	21	90	4	68	65	2	6	25	1.30
18025295--18025334	20	2.0	20	95	0	71	5	27	25	42	1.75
18037957--18038148	70	2.8	70	84	4	253	33	25	15	25	1.95
18044749--18044815	22	3.0	22	72	12	55	56	2	1	38	1.24
18049279--18049357	37	2.1	37	90	0	122	25	31	18	24	1.98
18049476--18049992	49	10.8	49	94	1	786	28	28	9	33	1.88
18050425--18050529	53	2.0	52	94	1	183	34	12	10	42	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126