genome.fa.s14.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  38  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11206394--11206453	29	2.1	29	93	6	106	41	0	6	51	1.28
11215640--11215673	13	2.7	12	90	9	50	55	5	0	38	1.24
11215732--11215764	15	2.2	15	94	0	57	33	0	3	63	1.10
11218532--11218562	6	5.2	6	100	0	62	51	0	0	48	1.00
11223669--11223712	19	2.4	18	79	20	56	72	0	2	25	0.96
11223656--11223712	17	3.3	17	77	18	55	71	0	1	26	0.95
11224351--11224390	15	2.8	14	88	3	53	45	2	0	52	1.14
11232730--11232768	19	2.0	19	85	5	51	56	0	0	43	0.99
11240501--11240777	131	2.1	131	99	0	547	42	8	5	43	1.58
11251779--11251874	29	3.2	29	81	8	113	33	15	4	46	1.65
11252427--11252484	4	15.5	4	80	12	54	81	0	18	0	0.70
11252424--11252488	10	6.1	10	79	15	60	81	0	18	0	0.69
11252432--11252488	29	2.1	28	90	9	91	84	0	15	0	0.63
11252439--11252488	10	5.1	10	81	13	68	86	0	14	0	0.58
11252432--11252488	18	3.1	18	82	9	71	84	0	15	0	0.63
11252840--11252884	8	5.5	8	80	15	56	80	0	20	0	0.72
11252840--11252886	17	2.9	17	87	12	64	78	0	21	0	0.75
11253338--11253388	18	2.8	18	76	8	59	31	13	11	43	1.80
11253515--11253647	17	7.6	18	69	18	68	27	15	8	48	1.73
11253522--11253600	35	2.2	37	78	14	96	21	15	10	53	1.71
11253565--11253647	17	4.8	17	75	5	69	31	14	8	45	1.74
11259877--11261247	78	17.8	77	88	4	1678	27	16	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11261419--11261543	29	4.2	29	78	3	133	30	17	4	48	1.66
11261502--11261563	30	2.1	31	81	6	74	32	19	6	41	1.77
11261914--11261957	22	2.0	22	82	8	54	63	0	34	2	1.07
11262068--11262139	11	6.2	11	79	10	72	80	0	18	1	0.78
11262083--11262140	16	3.7	15	80	17	73	84	0	13	1	0.70
11262378--11262432	17	3.0	18	76	10	58	25	40	27	7	1.82
11263028--11263069	22	2.0	21	86	9	59	40	7	9	42	1.65
11263036--11263080	22	2.0	22	83	12	56	40	6	6	46	1.56
11263082--11263223	61	2.3	60	84	5	171	26	11	10	51	1.71
11263125--11263164	18	2.2	18	86	8	55	22	12	12	52	1.72
11263143--11263200	27	2.2	26	81	3	62	24	15	6	53	1.66
11263185--11263265	17	4.6	18	72	17	71	30	12	11	45	1.76
11263687--11263751	29	2.2	28	89	10	96	40	4	9	46	1.57
11263695--11263759	29	2.2	31	88	5	98	38	7	12	41	1.71
11266028--11266254	19	11.9	19	68	21	79	44	10	11	33	1.76
11266029--11266139	17	6.3	18	72	15	56	40	9	11	37	1.75
11266027--11266254	18	12.1	18	68	18	101	44	10	11	33	1.76
11266091--11266138	17	2.8	17	87	3	60	50	10	8	31	1.66
11266100--11266162	17	3.6	17	77	8	63	44	7	6	41	1.59
11266149--11266217	24	2.8	25	77	14	63	50	10	11	27	1.70
11266198--11266255	17	3.3	17	73	17	64	48	10	15	25	1.77
11266317--11266370	20	2.6	22	86	11	71	35	11	14	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11266349--11266397	17	2.9	17	79	11	55	42	14	12	30	1.82
11266416--11266460	20	2.2	21	88	7	67	35	13	17	33	1.89
11266467--11266501	17	2.0	17	88	5	52	45	14	11	28	1.79
11266220--11266567	105	3.4	103	87	10	487	43	12	12	30	1.80
11266551--11266677	17	7.2	17	71	11	69	40	10	14	34	1.79
11266530--11266677	19	8.2	19	73	15	111	39	10	14	35	1.79
11267269--11267297	15	1.9	15	100	0	58	6	20	48	24	1.74
11267398--11267453	11	4.9	12	77	16	57	3	17	0	78	0.89
11267383--11267440	23	2.6	23	84	10	75	1	15	1	81	0.86
11267392--11267456	34	1.9	35	87	12	100	3	18	0	78	0.88
11267390--11267454	27	2.4	28	87	10	91	3	16	0	80	0.85
11267393--11267456	17	3.7	18	82	15	82	3	18	0	78	0.89
11267682--11267723	17	2.5	17	80	7	50	11	21	50	16	1.77
11267752--11267799	22	2.2	22	88	0	69	6	10	12	70	1.32
11268082--11268165	30	2.8	30	83	5	107	45	1	20	33	1.59
11268196--11268236	19	2.2	19	86	8	57	14	0	7	78	0.96
11268582--11269227	163	4.0	163	91	2	984	34	19	17	27	1.95
11270104--11270140	13	2.6	15	91	8	60	0	2	13	83	0.74
11270099--11270140	13	3.2	13	90	10	59	0	2	14	83	0.75
11283406--11283567	19	8.8	19	70	17	85	41	9	12	36	1.76
11283376--11283505	17	7.3	18	68	19	51	45	10	12	31	1.76
11283404--11283516	17	6.4	18	71	15	67	41	9	12	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11283468--11283515	17	2.8	17	90	3	69	50	10	10	29	1.70
11283569--11283630	18	3.5	18	76	10	65	48	9	14	27	1.75
11283582--11283776	44	4.3	45	75	12	148	48	12	12	26	1.76
11283612--11283785	94	1.8	94	87	2	258	48	13	10	27	1.74
11283784--11283820	19	1.9	19	94	0	65	29	10	21	37	1.88
11283828--11283859	17	1.9	17	93	6	57	43	9	9	37	1.69
11283888--11283932	20	2.2	21	88	7	67	35	13	17	33	1.89
11283695--11283972	104	2.7	105	90	1	459	45	13	12	29	1.79
11283931--11284053	18	6.9	18	72	9	92	41	13	14	30	1.84
11283995--11284053	19	3.2	18	92	7	84	38	10	15	35	1.81
11284646--11284674	15	1.9	15	100	0	58	6	20	48	24	1.74
11284775--11284830	11	4.9	12	77	16	57	3	17	0	78	0.89
11284760--11284817	23	2.6	23	84	10	75	1	15	1	81	0.86
11284769--11284833	34	1.9	35	87	12	100	3	18	0	78	0.88
11284767--11284831	27	2.4	28	87	10	91	3	16	0	80	0.85
11284770--11284833	17	3.7	18	82	15	82	3	18	0	78	0.89
11285059--11285100	17	2.5	17	80	7	50	9	21	52	16	1.72
11285477--11285579	30	3.4	30	74	9	102	45	2	18	33	1.64
11289414--11290019	304	2.0	304	91	0	980	35	13	23	27	1.92
11294845--11294878	16	2.1	17	88	5	52	47	8	2	41	1.50
11295552--11296009	152	3.0	152	97	0	846	36	14	21	26	1.93
11297186--11297231	19	2.5	19	80	16	60	54	0	4	41	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11298170--11298219	16	3.1	16	88	11	75	62	0	30	8	1.24
11305490--11305560	20	3.6	19	77	12	72	33	11	11	43	1.76
11315887--11315943	29	2.0	29	86	6	82	52	14	0	33	1.41
11318655--11318780	30	4.2	30	78	9	141	31	22	6	39	1.79
11319129--11319177	25	2.0	25	91	0	80	73	14	10	2	1.18
11319304--11319370	17	4.1	17	71	11	50	77	0	22	0	0.77
11319312--11319370	17	3.5	17	77	13	59	76	0	23	0	0.79
11319297--11319369	31	2.3	31	83	2	92	75	0	24	0	0.81
11319827--11319878	18	3.1	17	81	8	54	17	0	5	76	0.97
11319852--11319878	5	5.4	5	100	0	54	18	0	0	81	0.69
11320179--11320224	17	2.6	18	80	16	60	32	15	6	45	1.71
11320264--11320325	18	3.6	17	78	10	72	35	12	9	41	1.76
11320263--11320412	54	2.8	54	73	14	146	32	12	10	46	1.74
11320271--11320449	17	9.9	17	68	14	99	29	11	10	49	1.72
11320363--11320504	37	3.8	37	78	15	134	31	12	10	45	1.76
11320336--11320507	74	2.3	74	79	9	190	30	12	9	47	1.74
11320511--11320575	22	3.2	21	80	12	64	43	6	9	41	1.61
11327977--11328003	14	1.9	14	100	0	54	29	7	0	62	1.22
11328006--11328578	75	7.6	74	84	10	680	28	15	21	34	1.94
11328774--11328899	30	4.2	30	78	11	134	30	23	5	40	1.77
11328781--11328897	59	2.0	60	86	5	166	32	23	4	39	1.74
11329261--11329311	24	2.1	24	92	0	84	74	15	9	0	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11330101--11330146	17	2.6	18	80	16	60	32	13	8	45	1.73
11330176--11330261	18	4.9	17	80	11	77	32	13	11	41	1.81
11330186--11330332	54	2.7	54	74	13	149	30	14	10	44	1.78
11330184--11330424	37	6.6	37	74	13	180	31	13	10	44	1.78
11330464--11330530	19	3.7	19	70	11	59	44	4	8	41	1.56
11330452--11330525	35	2.1	34	87	2	103	40	4	9	45	1.55
11330503--11330545	22	2.0	22	86	8	63	48	6	11	32	1.66
11331181--11331219	20	1.9	20	84	5	51	71	5	7	15	1.26
11332240--11332296	28	2.0	29	93	3	98	12	22	26	38	1.89
11332269--11332364	45	2.2	44	88	1	138	20	17	19	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126