genome.fa.s14.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  107  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32559284--32559361	40	1.9	41	82	10	97	26	28	20	24	1.99
32567034--32567181	40	3.7	40	97	0	269	21	27	20	31	1.98
32575851--32575916	31	2.1	31	88	0	96	24	13	34	27	1.93
32577114--32577174	21	3.0	20	75	18	56	55	1	16	26	1.50
32579254--32579298	19	2.3	20	81	14	58	75	6	13	4	1.15
32579290--32579339	15	3.6	14	78	13	50	70	2	24	4	1.15
32584849--32584900	20	2.6	20	78	0	50	50	9	5	34	1.59
32587592--32587642	20	2.5	20	75	12	59	41	19	13	25	1.88
32589103--32589132	15	1.9	16	93	6	53	30	16	0	53	1.44
32598828--32598897	20	3.5	20	70	1	70	31	21	22	24	1.98
32598838--32598954	40	2.9	40	81	5	128	35	22	20	21	1.96
32599022--32599111	38	2.3	38	86	5	119	43	11	23	22	1.85
32600666--32600751	35	2.5	35	78	3	93	29	16	20	33	1.95
32600688--32600766	35	2.3	35	82	8	99	30	16	20	32	1.94
32600688--32600776	35	2.5	35	80	3	90	30	15	21	32	1.94
32602660--32602721	26	2.4	26	86	0	79	41	14	9	33	1.79
32602679--32602734	26	2.2	26	78	9	62	44	10	12	32	1.77
32603077--32603149	36	2.0	36	100	0	146	38	10	10	39	1.76
32606693--32606743	23	2.2	23	89	0	75	27	7	21	43	1.80
32607379--32607469	40	2.3	40	88	0	137	19	26	15	38	1.92
32607844--32607913	26	2.7	26	88	0	95	32	28	10	28	1.89
32613358--32613423	31	2.1	31	88	0	96	24	13	34	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32615863--32616037	95	1.9	95	87	1	262	35	16	7	41	1.76
32615848--32616053	94	2.2	95	82	2	265	34	17	7	39	1.79
32616505--32616659	67	2.3	69	81	5	165	38	16	5	38	1.73
32616286--32616832	249	2.2	250	81	6	624	36	18	6	38	1.78
32618848--32618875	3	9.3	3	100	0	56	67	0	0	32	0.91
32627172--32627217	20	2.3	21	82	17	62	43	23	23	8	1.82
32627202--32627327	20	6.3	20	69	14	82	38	19	30	11	1.88
32627211--32627316	40	2.7	40	84	7	119	37	19	30	12	1.89
32630162--32630250	36	2.5	36	89	3	137	41	31	11	15	1.83
32633627--32633664	18	2.1	18	90	0	58	31	10	26	31	1.90
32637930--32637987	30	1.9	30	86	6	82	41	6	24	27	1.80
32638324--32638466	50	2.8	50	89	1	214	25	24	30	19	1.98
32642369--32642411	15	2.9	15	93	3	70	44	6	6	41	1.58
32647729--32647755	8	3.4	8	100	0	54	37	0	11	51	1.37
32649400--32649432	17	1.9	17	93	0	57	66	3	6	24	1.28
32649380--32649423	19	2.3	18	81	11	52	77	0	6	15	0.97
32657234--32657455	114	1.9	114	97	0	417	25	15	21	37	1.93
32665746--32665780	5	7.0	5	93	0	61	0	57	0	42	0.99
32665909--32665997	6	15.3	6	76	13	55	17	4	2	75	1.08
32665916--32665997	10	7.7	10	74	18	69	19	3	2	74	1.08
32665921--32665999	41	2.0	40	85	12	108	20	3	2	73	1.11
32665915--32666009	50	2.0	45	84	10	118	22	3	2	72	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32667065--32667110	24	2.0	23	86	4	65	13	6	6	73	1.22
32676084--32676136	26	2.0	26	96	0	97	39	11	13	35	1.80
32680631--32680693	25	2.5	25	81	0	81	26	20	19	33	1.96
32691308--32691408	48	2.1	48	85	3	132	41	25	16	15	1.88
32697467--32697547	41	2.0	41	85	0	108	49	6	18	25	1.71
32706025--32706227	102	2.0	100	98	1	388	31	12	25	30	1.93
32706247--32706369	61	2.0	61	98	0	237	33	10	26	30	1.90
32707492--32707669	27	6.6	27	82	3	196	26	15	28	29	1.96
32707493--32707648	82	1.9	81	86	3	224	26	16	28	28	1.97
32707489--32707669	82	2.2	81	82	2	220	27	16	27	29	1.97
32712513--32712557	22	2.0	23	82	8	56	40	22	4	33	1.74
32713677--32713731	17	3.2	17	76	19	69	36	16	7	40	1.76
32716703--32716728	8	3.2	8	100	0	52	23	0	11	65	1.25
32731698--32731937	29	8.3	29	79	3	173	25	25	12	37	1.90
32731636--32731890	87	2.9	87	75	5	210	25	26	12	36	1.91
32731680--32731826	58	2.5	58	78	4	188	25	25	12	36	1.91
32731683--32731915	116	2.0	116	82	3	281	24	26	12	36	1.91
32731698--32731919	87	2.5	86	74	7	205	25	25	12	37	1.90
32739529--32739567	18	2.1	19	86	13	55	35	0	17	46	1.49
32739793--32739874	23	3.6	23	88	0	110	23	21	24	30	1.99
32739885--32739918	16	2.1	17	88	5	52	38	5	17	38	1.74
32740749--32741181	219	2.0	220	89	2	674	25	12	19	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32746613--32746646	15	2.3	15	90	10	52	17	26	5	50	1.69
32747945--32748372	220	1.9	220	89	2	655	26	12	19	41	1.87
32754988--32755016	14	2.0	15	93	6	51	6	6	34	51	1.55
32762879--32763055	46	3.8	46	86	2	248	28	25	9	35	1.88
32763752--32763805	17	3.0	18	76	15	58	44	20	0	35	1.52
32765760--32766016	80	3.2	79	80	4	250	26	21	27	25	1.99
32765760--32765981	40	5.6	40	84	3	225	25	21	27	26	1.99
32765835--32766016	79	2.3	80	84	1	233	26	20	27	25	1.99
32772960--32773026	35	1.9	36	85	11	95	37	20	8	32	1.84
32790280--32790462	79	2.3	81	83	7	223	24	27	22	24	2.00
32790259--32790462	40	5.1	40	81	8	229	24	27	22	25	2.00
32793151--32793267	40	2.9	40	77	5	128	25	27	22	24	2.00
32793163--32793274	40	2.8	40	79	0	134	25	27	21	25	1.99
32794657--32794748	39	2.3	40	84	3	123	25	28	21	25	1.99
32794662--32794801	40	3.5	39	77	6	120	24	27	22	25	1.99
32794733--32794810	40	1.9	41	82	10	97	26	28	21	23	1.99
32796300--32796577	40	7.0	40	82	7	230	25	28	21	24	1.99
32796300--32796576	80	3.5	78	81	6	272	25	28	21	24	1.99
32798359--32798526	40	4.2	40	83	4	106	25	27	23	23	2.00
32798382--32798526	40	3.6	40	85	4	193	23	26	24	25	2.00
32800266--32800367	49	2.1	50	85	5	136	21	17	38	22	1.93
32801914--32802094	42	4.5	42	75	13	182	22	16	26	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32801956--32802131	77	2.3	75	86	1	235	22	18	26	33	1.96
32805122--32805248	31	4.3	29	69	21	86	37	2	18	40	1.64
32813426--32813565	50	2.8	51	77	6	158	22	27	22	27	1.99
32820013--32820102	28	3.2	29	76	7	89	64	1	23	11	1.32
32824167--32824201	3	11.7	3	93	0	61	71	0	28	0	0.86
32824377--32824414	12	3.2	12	81	11	51	0	71	2	26	1.00
32826281--32826310	14	2.1	15	93	6	53	46	0	0	53	1.00
32828315--32828579	124	2.1	124	85	2	354	29	15	23	31	1.95
32830993--32832026	94	11.3	92	87	7	1189	27	0	22	49	1.54
32831166--32831221	23	2.4	23	96	0	103	25	0	26	48	1.52
32831068--32832020	117	7.9	118	82	11	935	27	0	22	49	1.55
32831283--32831338	23	2.4	23	96	0	103	25	0	26	48	1.52
32831668--32831933	29	9.0	26	72	19	97	27	0	24	48	1.51
32831870--32831925	23	2.4	23	96	0	103	25	0	26	48	1.52
32831986--32832053	23	2.9	24	80	8	86	27	1	26	44	1.63
32834679--32834722	18	2.4	19	85	7	56	34	0	2	63	1.07
32835000--32835090	20	4.6	19	73	10	85	37	5	6	50	1.52
32839381--32839426	15	2.9	15	87	9	56	41	0	2	56	1.11
32840277--32840311	2	18.0	2	94	5	63	48	0	51	0	1.00
32840477--32840509	15	2.2	16	89	10	52	78	6	0	15	0.93
32842604--32842640	18	2.0	20	89	10	60	40	0	2	56	1.13
32845864--32846068	91	2.3	91	75	1	214	30	20	16	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32863379--32863467	44	2.0	43	93	2	151	55	4	22	16	1.59
32870822--32870890	30	2.3	30	89	0	102	31	17	24	26	1.97
32872157--32872186	8	3.8	8	100	0	60	46	0	0	53	1.00
32874449--32874485	18	2.1	18	89	0	56	35	8	13	43	1.74
32876947--32877014	25	2.6	26	86	9	86	20	26	23	29	1.99
32886587--32886624	12	2.9	13	85	11	51	73	23	0	2	0.95
32901372--32901549	27	6.6	27	84	3	205	29	28	15	26	1.96
32901393--32901548	82	1.9	81	88	3	233	29	28	15	26	1.96
32907247--32907295	25	2.0	24	84	4	62	20	22	24	32	1.98
32909809--32909848	21	2.0	20	90	5	62	50	5	17	27	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126