genome.fa.s14.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  68  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20274200--20274446	44	5.6	44	67	8	144	28	19	26	25	1.98
20274725--20275578	44	19.4	43	63	13	141	28	18	24	27	1.98
20276409--20276590	44	4.2	43	64	19	106	28	18	24	28	1.98
20274145--20276602	132	18.6	132	89	0	3379	28	18	24	28	1.98
20276697--20276816	44	2.7	44	79	8	129	30	19	21	28	1.97
20278208--20278287	3	26.0	3	75	14	74	32	1	2	63	1.15
20278208--20278288	25	3.3	25	84	6	103	32	1	2	64	1.15
20281340--20281372	6	5.5	6	96	0	57	36	0	63	0	0.95
20281983--20282053	28	2.7	25	83	14	74	38	2	7	52	1.44
20281991--20282053	12	4.8	13	70	26	53	39	1	7	50	1.41
20282615--20282660	17	2.6	18	82	6	58	43	4	0	52	1.21
20291847--20292055	106	2.0	106	89	5	325	37	11	22	28	1.89
20291847--20292057	53	4.0	53	84	2	282	36	11	22	28	1.90
20293334--20293373	20	2.0	20	90	0	62	25	5	20	50	1.68
20295471--20295523	3	17.3	3	88	3	70	33	5	0	60	1.20
20296018--20296199	96	1.9	97	86	5	260	41	3	12	42	1.58
20296108--20296413	158	2.0	154	88	5	454	43	4	11	40	1.60
20298398--20298443	23	1.9	24	86	8	67	21	6	15	56	1.61
20299602--20299686	34	2.5	35	81	5	104	45	0	4	49	1.23
20300658--20300708	6	8.5	6	86	0	57	37	0	9	52	1.34
20300658--20300708	12	4.2	12	84	0	66	37	0	9	52	1.34
20301017--20301063	23	2.0	23	83	4	58	59	12	0	27	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20304304--20304466	46	3.5	46	70	8	134	29	16	24	29	1.97
20305259--20305314	27	2.1	27	89	0	85	44	23	3	28	1.70
20306468--20306492	13	1.9	13	100	0	50	40	28	8	24	1.83
20307762--20307826	25	2.6	25	76	9	69	29	18	23	29	1.98
20307832--20307882	24	2.1	24	88	0	75	35	19	21	23	1.96
20309814--20309902	44	2.0	44	93	0	151	43	14	4	37	1.66
20313842--20313871	14	2.1	14	93	0	51	40	0	43	16	1.48
20314421--20314468	22	2.3	22	85	7	64	60	8	4	27	1.44
20314492--20314531	18	2.1	20	90	9	66	47	0	2	50	1.14
20319697--20319820	62	2.0	62	100	0	248	20	25	17	35	1.95
20324159--20324206	5	9.6	5	100	0	96	81	0	0	18	0.70
20325165--20325194	14	2.1	14	93	0	51	40	0	43	16	1.48
20325570--20325619	22	2.4	22	86	6	68	64	6	4	26	1.35
20327178--20327203	12	2.2	12	100	0	52	23	23	19	34	1.96
20335931--20336960	40	25.8	40	83	2	1059	30	16	30	21	1.95
20335980--20336044	20	3.2	20	68	8	51	26	15	35	23	1.94
20336119--20336260	20	7.1	20	59	9	56	30	19	30	19	1.96
20337639--20337663	7	3.6	7	100	0	50	76	0	0	24	0.80
20339950--20339975	13	2.0	13	100	0	52	38	0	7	53	1.30
20344353--20344455	46	2.2	46	78	0	116	33	11	24	31	1.91
20348668--20348930	40	6.6	40	88	3	325	26	27	20	24	1.99
20353264--20353540	30	9.4	30	81	8	225	39	12	24	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20353325--20353606	60	4.7	59	72	13	209	36	12	25	24	1.91
20353242--20353604	178	2.0	177	87	1	512	38	13	24	23	1.91
20354437--20354486	20	2.5	20	96	0	91	16	38	26	20	1.92
20358083--20358130	19	2.6	19	81	15	57	39	35	0	25	1.56
20365596--20365773	27	6.6	27	83	3	178	29	28	15	27	1.96
20365622--20365772	82	1.9	81	88	4	232	29	27	15	27	1.96
20370772--20370942	93	1.8	93	92	0	288	29	27	19	23	1.98
20370767--20370939	46	3.7	46	77	10	190	30	26	19	23	1.98
20371362--20371421	30	2.0	30	90	0	93	30	25	8	36	1.85
20375178--20375272	47	2.0	47	91	0	154	22	27	16	33	1.95
20378566--20378605	19	2.1	19	100	0	80	50	20	5	25	1.68
20379624--20379663	16	2.5	17	76	15	50	25	0	5	70	1.08
20380323--20380395	37	1.9	37	86	8	103	67	2	1	28	1.13
20380593--20380634	21	2.0	21	85	0	57	21	9	35	33	1.86
20380785--20380868	22	3.7	23	72	17	68	47	1	1	50	1.16
20387405--20387454	17	3.1	16	77	11	57	28	2	2	68	1.12
20387946--20387982	17	2.2	16	90	4	56	43	0	0	56	0.99
20387945--20388023	24	3.2	24	76	13	79	41	1	0	56	1.07
20387939--20388003	27	2.4	28	82	7	80	38	0	0	61	0.96
20388706--20388741	3	12.0	3	100	0	72	66	0	0	33	0.92
20405117--20405463	50	6.8	50	84	3	365	23	27	20	28	1.99
20405179--20405458	150	1.8	154	86	4	415	23	28	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20421389--20421521	45	3.0	45	83	4	144	42	11	23	22	1.85
20421808--20421925	39	3.2	39	62	30	94	38	6	27	27	1.81
20421778--20421928	72	2.1	72	98	0	293	38	7	27	26	1.83
20422867--20422950	42	2.0	42	83	0	105	20	29	20	29	1.97
20439356--20439406	9	5.4	9	77	9	57	64	3	0	31	1.11
20439338--20439417	28	2.8	29	73	21	78	65	5	2	27	1.27
20439338--20439420	19	4.4	19	77	11	82	63	4	2	28	1.27
20439356--20439416	28	2.2	28	85	5	79	63	4	1	29	1.24
20439338--20439418	29	2.9	27	75	18	76	64	4	2	28	1.27
20439523--20439553	16	2.0	16	93	6	55	70	3	6	19	1.22
20439587--20439742	9	16.2	9	66	22	52	30	5	1	62	1.24
20439863--20440035	88	2.0	89	81	3	206	34	8	17	38	1.81
20442213--20442258	9	4.9	9	84	7	56	28	10	0	60	1.30
20442214--20442257	19	2.3	19	100	0	88	29	11	0	59	1.32
20445306--20445362	24	2.4	24	87	0	78	49	8	5	36	1.57
20445318--20445369	24	2.2	24	85	0	68	53	5	3	36	1.43
20445462--20445518	29	2.0	29	89	0	87	33	31	12	22	1.91
20448670--20448726	24	2.4	24	87	0	78	49	8	5	36	1.57
20448682--20448733	24	2.2	24	85	0	68	53	5	3	36	1.43
20458977--20459036	21	3.1	21	71	24	69	33	3	6	56	1.42
20461873--20461960	42	2.1	41	95	2	158	23	13	28	34	1.93
20463189--20463238	25	2.0	25	92	0	82	24	10	22	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20463424--20463473	25	2.0	25	100	0	100	64	0	12	24	1.27
20463428--20463486	25	2.4	25	91	0	91	64	0	10	25	1.25
20465071--20465168	30	3.3	30	68	21	96	50	21	5	23	1.69
20465058--20465185	60	2.1	60	98	0	247	48	23	5	22	1.71
20478917--20478990	37	2.0	37	100	0	148	32	13	10	43	1.79
20488420--20488642	79	2.8	78	83	7	272	24	27	22	25	2.00
20488420--20488642	39	5.7	40	87	6	280	24	27	22	25	2.00
20497855--20498114	61	4.3	60	74	4	182	27	23	13	35	1.92
20504894--20504945	26	2.0	26	81	7	61	34	17	7	40	1.78
20516594--20516668	38	1.9	39	91	2	125	48	28	6	17	1.72
20516801--20516875	37	2.0	37	89	5	116	38	4	13	44	1.62
20516874--20516922	9	5.4	9	92	0	71	26	12	24	36	1.91
20517088--20517118	12	2.6	12	94	0	53	19	22	29	29	1.98
20520590--20520770	93	2.0	92	94	1	317	37	21	16	24	1.93
20520724--20520797	28	2.6	28	95	0	130	36	14	24	24	1.93
20523506--20523612	41	2.6	41	89	0	160	29	18	24	27	1.98
20523615--20523754	43	3.3	42	72	10	115	24	15	24	35	1.94
20527681--20527731	20	2.5	21	90	6	79	23	23	17	35	1.95
20530011--20530063	26	2.0	26	85	0	70	43	16	15	24	1.87
20537996--20538064	31	2.2	30	82	12	86	34	14	11	39	1.82
20554490--20554548	26	2.2	28	82	14	79	61	1	0	37	1.07
20557816--20557926	29	3.8	29	79	3	107	35	24	18	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20557902--20557971	26	2.7	26	84	8	97	41	25	18	14	1.88
20561433--20561532	29	3.4	29	81	0	110	35	21	15	29	1.93
20563590--20563633	23	1.9	23	95	0	79	70	9	6	13	1.33
20563700--20563732	11	2.9	12	82	17	52	69	6	0	24	1.10
20563700--20563741	22	1.9	22	85	9	59	69	4	2	23	1.20
20563765--20563868	19	5.4	18	70	19	68	75	0	4	18	1.02
20563770--20563868	41	2.6	37	76	16	103	76	1	4	18	0.99
20563776--20563863	25	3.5	26	70	20	53	76	1	3	19	1.00
20563765--20563860	10	9.7	9	81	11	75	76	1	4	18	1.01
20565985--20566084	29	3.4	29	81	0	110	35	21	15	29	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126