genome.fa.s14.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  77  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23099742--23099834	46	2.0	46	95	0	168	25	18	21	34	1.96
23103966--23104550	40	14.6	40	93	0	974	26	20	27	25	1.99
23109631--23109704	33	2.2	34	83	7	89	10	27	5	56	1.55
23109698--23109758	6	10.7	6	82	10	65	11	16	0	72	1.13
23112590--23112637	10	4.7	11	80	14	59	25	16	29	29	1.97
23112592--23112637	20	2.3	20	92	0	74	23	17	30	28	1.97
23120468--23120498	15	2.1	15	93	0	53	83	0	16	0	0.64
23126105--23126131	14	1.9	14	100	0	54	22	22	11	44	1.84
23131018--23131057	20	2.0	21	95	5	73	35	15	25	25	1.94
23133266--23133320	12	4.4	12	78	17	51	3	21	1	72	1.09
23133251--23133315	26	2.5	26	80	14	80	4	21	3	70	1.19
23135701--23135878	27	6.6	27	83	3	205	26	15	28	29	1.96
23135702--23135857	82	1.9	81	88	3	233	26	15	28	29	1.96
23135698--23135878	82	2.2	81	83	2	229	27	15	27	29	1.96
23142154--23142587	40	10.9	40	93	0	715	26	20	27	24	1.99
23146031--23146131	52	1.9	52	93	0	175	24	18	22	33	1.97
23149257--23149316	30	2.0	30	96	0	111	43	23	15	18	1.87
23150333--23150365	18	1.9	18	88	11	52	30	15	12	42	1.83
23152695--23152795	52	1.9	52	95	0	184	26	18	21	32	1.97
23157278--23157362	20	4.3	20	90	1	127	28	17	28	25	1.98
23157278--23157374	40	2.5	40	87	1	142	29	15	28	25	1.96
23157286--23157361	10	7.6	10	78	11	84	27	15	28	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23157278--23157374	20	4.9	19	86	6	122	29	15	28	25	1.96
23160877--23160918	17	2.4	18	88	4	59	14	28	2	54	1.52
23162858--23162902	22	2.0	23	82	4	56	40	28	4	26	1.75
23166851--23166897	13	3.6	13	80	8	51	70	0	25	4	1.05
23166918--23166954	18	2.1	18	94	0	65	62	0	29	8	1.24
23170494--23170623	70	1.9	69	88	4	199	27	9	12	50	1.70
23172599--23172642	22	2.0	22	95	0	79	25	36	4	34	1.76
23173418--23173460	14	2.9	14	83	12	59	60	2	13	23	1.45
23173423--23173462	16	2.5	16	95	0	71	70	2	10	17	1.27
23189492--23189558	12	5.1	14	72	22	56	73	1	17	7	1.14
23189548--23189596	18	2.7	18	77	0	62	67	0	18	14	1.23
23189508--23189577	26	2.8	25	79	12	72	71	1	17	10	1.20
23189581--23189635	27	2.1	27	82	3	67	67	1	23	7	1.26
23198304--23198353	21	2.5	20	87	9	68	72	2	22	4	1.12
23209813--23209845	16	2.1	16	94	0	57	66	6	3	24	1.28
23222657--23222700	18	2.4	18	88	11	63	72	2	20	4	1.13
23225912--23225979	29	2.3	29	85	5	93	27	30	13	27	1.94
23229458--23229719	39	6.7	40	88	7	337	24	27	22	25	2.00
23237656--23237723	29	2.3	29	82	5	84	27	29	13	29	1.94
23237545--23238395	174	4.9	174	97	0	1585	31	24	13	29	1.94
23237830--23237897	29	2.3	29	85	5	93	27	30	13	27	1.94
23238004--23238071	29	2.3	29	85	5	93	27	30	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23238178--23238245	29	2.3	29	82	5	84	27	29	13	29	1.94
23239121--23239192	33	2.1	34	87	2	101	41	6	11	40	1.67
23242630--23242668	17	2.4	17	87	12	55	15	12	2	69	1.30
23246753--23246797	20	2.2	20	88	0	63	26	13	15	44	1.83
23254253--23254432	88	2.0	88	89	2	272	30	20	15	33	1.93
23258331--23258810	240	2.0	240	96	0	879	34	17	15	32	1.91
23258956--23259038	26	3.3	26	66	19	75	51	20	2	25	1.59
23259393--23259436	22	1.9	24	86	9	65	65	15	0	18	1.27
23261147--23261198	27	1.9	27	84	0	68	7	34	1	55	1.39
23264101--23264403	40	7.7	40	90	4	395	25	21	27	25	2.00
23264101--23264436	119	2.8	119	84	7	366	26	21	27	25	1.99
23271039--23271063	13	1.9	13	100	0	50	88	4	8	0	0.64
23272141--23272324	40	4.6	41	81	12	208	25	22	27	25	2.00
23272141--23272324	79	2.3	81	82	11	222	25	22	27	25	2.00
23272193--23272357	79	2.1	79	82	8	194	26	21	27	24	1.99
23274559--23275406	65	13.0	65	100	0	1696	36	10	16	35	1.84
23275866--23275910	19	2.3	19	80	3	54	75	0	17	6	1.01
23281346--23281427	42	2.0	42	97	0	155	39	8	18	34	1.81
23302450--23302474	13	1.9	13	100	0	50	8	0	36	56	1.29
23304226--23304266	19	2.2	19	90	0	64	78	2	7	12	1.06
23310963--23311010	21	2.4	21	86	10	66	72	2	20	4	1.11
23316893--23317112	45	4.9	45	90	0	332	27	16	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23319148--23319228	31	2.8	29	76	14	94	35	12	1	50	1.48
23319234--23319293	19	3.1	18	73	17	57	33	5	0	61	1.17
23319243--23319291	21	2.5	20	80	9	55	32	4	0	63	1.13
23333749--23335340	47	33.4	47	95	2	2527	32	9	29	28	1.89
23335459--23335537	37	2.1	37	85	0	104	25	17	30	26	1.97
23342261--23342302	18	2.3	18	88	12	59	73	2	19	4	1.12
23344068--23344139	33	2.1	34	89	2	110	40	6	12	40	1.70
23347579--23347617	17	2.4	17	87	12	55	15	12	2	69	1.30
23347898--23347963	33	2.0	33	87	0	96	27	9	22	40	1.84
23350740--23350815	38	2.0	38	94	0	134	31	14	27	26	1.95
23351731--23351775	20	2.2	20	88	0	63	26	13	15	44	1.83
23360792--23360830	16	2.4	16	91	4	60	71	5	5	17	1.23
23362043--23362086	22	1.9	24	86	9	65	65	15	0	18	1.27
23363800--23363851	27	1.9	27	84	0	68	7	34	1	55	1.39
23364775--23364823	13	3.5	15	86	8	59	18	10	6	65	1.43
23366582--23366626	19	2.3	19	80	3	54	75	0	17	6	1.01
23372092--23372173	42	2.0	42	97	0	155	40	9	17	32	1.82
23375804--23375899	31	3.1	31	95	3	174	31	9	13	45	1.75
23379784--23379845	31	2.0	31	100	0	124	32	9	16	41	1.80
23380144--23380203	30	2.1	27	81	9	66	26	6	0	66	1.16
23386012--23386189	27	6.6	27	83	3	205	26	15	28	29	1.96
23386013--23386168	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23386009--23386189	82	2.2	81	83	2	229	27	15	27	29	1.96
23393627--23393804	27	6.6	27	83	3	205	26	15	28	29	1.96
23393628--23393783	82	1.9	81	88	3	233	26	15	28	29	1.96
23393624--23393804	82	2.2	81	83	2	229	27	15	27	29	1.96
23398768--23398920	77	2.0	76	94	1	270	28	18	14	37	1.90
23400911--23400964	19	2.7	21	83	16	78	77	1	11	9	1.06
23400931--23400996	15	4.5	15	80	16	59	74	1	18	6	1.10
23400890--23400982	18	5.2	19	72	18	58	74	2	17	6	1.13
23400958--23400999	13	3.0	14	86	10	59	71	0	23	4	1.05
23412181--23412984	318	2.5	317	91	1	1272	29	20	25	24	1.99
23417275--23417536	39	6.7	40	88	7	337	24	27	22	25	2.00
23424313--23424371	16	3.6	16	70	22	50	10	25	8	55	1.61
23424315--23424388	33	2.2	34	88	7	107	10	27	5	56	1.55
23424382--23424411	6	5.2	6	92	8	53	0	16	0	83	0.65
23429102--23429138	18	2.1	18	89	0	56	8	21	0	70	1.13
23431146--23431190	12	3.8	12	82	11	56	22	4	2	71	1.15
23431146--23431190	11	3.7	13	82	14	60	22	4	2	71	1.15
23433753--23433809	20	2.9	20	84	2	71	28	33	19	19	1.96
23433751--23433816	20	3.4	19	72	14	62	25	31	18	24	1.97
23438730--23438764	11	3.0	12	83	8	54	80	5	0	14	0.89
23461105--23461155	16	3.2	16	88	0	75	19	15	11	52	1.73
23466297--23466337	21	2.0	21	85	0	55	65	2	24	7	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23473984--23474010	14	1.9	14	100	0	54	7	0	33	59	1.25
23475731--23475781	24	2.2	23	82	10	59	74	1	19	3	1.07
23475731--23475791	20	2.9	20	80	11	61	72	3	18	6	1.21
23480052--23480078	6	4.5	6	100	0	54	48	37	0	14	1.45
23483739--23483801	23	2.7	24	80	9	76	36	33	4	25	1.77
23490362--23490393	12	2.7	12	95	0	55	75	3	6	15	1.14
23492453--23492480	14	2.0	14	100	0	56	78	7	14	0	0.95
23496927--23497030	18	5.8	17	67	17	52	66	0	23	9	1.27
23501387--23501448	18	3.2	20	75	6	56	66	3	22	8	1.33
23503411--23503456	20	2.3	21	81	11	60	45	13	13	28	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126