genome.fa.s14.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  40  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11633552--11633586	13	2.8	13	95	4	63	40	22	8	28	1.84
11638343--11638414	35	2.1	35	94	0	126	31	23	4	40	1.74
11643587--11643954	44	8.3	45	77	5	345	28	27	15	27	1.96
11643587--11643954	89	4.1	90	75	10	328	28	27	15	27	1.96
11643587--11643955	134	2.8	133	91	3	589	28	27	15	27	1.96
11645549--11645588	16	2.5	16	95	0	71	7	20	12	60	1.56
11649585--11649642	22	2.7	21	76	10	53	41	15	5	37	1.70
11649634--11649659	12	2.2	12	100	0	52	42	15	7	34	1.75
11652407--11652580	48	3.6	48	88	0	186	21	29	21	27	1.99
11654934--11654964	16	1.9	16	93	0	53	51	0	0	48	1.00
11667111--11667161	3	17.0	3	76	8	50	33	7	0	58	1.27
11670629--11670753	24	4.8	25	68	23	64	35	0	2	61	1.09
11670633--11670762	38	3.3	38	75	17	140	34	0	2	62	1.08
11670603--11670762	80	2.0	79	95	3	286	36	0	2	60	1.11
11670616--11670763	43	3.6	43	71	18	143	35	0	2	61	1.10
11673089--11673117	10	2.9	10	100	0	58	79	10	10	0	0.94
11673090--11673150	10	5.7	10	76	14	50	83	9	4	1	0.86
11673092--11673151	16	3.6	16	77	13	59	83	10	5	1	0.87
11673092--11673151	17	3.6	16	80	8	66	83	10	5	1	0.87
11673581--11673701	46	2.5	51	85	8	153	42	21	26	9	1.84
11674934--11675817	144	6.2	144	95	0	1477	29	21	23	25	1.99
11675281--11675779	44	10.5	45	67	15	256	28	22	23	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11675696--11675929	120	2.0	120	88	1	353	28	22	22	27	1.99
11677409--11677465	3	19.0	3	81	0	69	33	5	1	59	1.30
11679097--11679153	28	2.0	28	100	0	114	36	10	14	38	1.80
11685370--11685583	68	3.2	68	87	2	290	31	16	25	26	1.97
11686718--11686803	40	2.2	40	80	0	100	38	20	13	26	1.91
11686854--11687039	40	4.7	40	83	0	228	26	20	25	27	1.99
11686667--11686961	155	1.9	155	83	2	387	28	20	21	30	1.98
11687259--11687402	7	20.3	7	73	11	78	22	2	28	46	1.66
11687259--11687461	14	14.2	14	72	8	113	23	2	32	42	1.67
11687355--11687454	29	3.5	28	76	2	101	23	2	36	39	1.66
11687435--11687462	7	4.0	7	100	0	56	14	0	42	42	1.45
11687555--11687594	14	2.7	14	84	7	53	25	0	25	50	1.50
11688155--11688208	23	2.3	24	87	3	74	55	9	12	22	1.65
11693159--11693417	43	6.0	43	78	2	225	25	15	23	34	1.95
11693170--11693423	86	3.0	86	77	4	253	24	15	24	35	1.94
11693161--11693421	129	2.0	129	82	1	317	24	15	24	35	1.94
11698572--11698807	50	4.7	50	86	2	296	26	22	29	21	1.99
11701614--11701804	101	1.9	99	84	2	256	31	17	25	25	1.97
11705735--11705771	18	2.1	18	94	0	65	18	27	5	48	1.70
11712006--11716006	934	4.3	934	94	0	6403	32	16	19	31	1.94
11721226--11721324	24	4.2	24	78	2	101	21	15	21	42	1.89
11722267--11722576	153	2.0	153	93	0	530	25	9	13	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11728828--11728857	12	2.4	13	94	5	53	20	6	6	66	1.38
11742440--11742483	21	2.1	19	84	16	52	45	13	0	40	1.44
11746270--11746307	6	6.5	6	96	3	69	0	15	0	84	0.63
11751507--11751664	26	6.1	26	87	0	217	36	21	17	24	1.95
11751528--11751682	52	3.0	52	87	0	211	34	21	19	24	1.96
11751507--11751664	78	2.0	78	91	4	257	36	21	17	24	1.95
11751888--11751937	26	1.9	26	91	0	82	22	22	22	34	1.97
11753238--11753285	15	3.3	14	85	5	60	75	0	20	4	0.97
11753232--11753287	21	2.7	21	86	2	69	71	0	23	5	1.06
11755369--11755416	20	2.4	20	85	0	60	27	25	8	39	1.84
11758969--11759041	38	1.9	38	88	0	110	36	16	17	28	1.92
11759202--11759258	15	3.9	15	80	19	75	75	3	0	21	0.95
11759200--11759258	20	2.8	20	76	20	57	76	3	0	20	0.93
11759202--11759257	29	2.0	28	89	10	87	75	3	0	21	0.96
11759754--11759784	9	3.4	9	90	0	53	25	12	22	38	1.90
11759900--11759942	21	2.0	21	86	8	61	25	32	0	41	1.56
11760078--11760137	30	2.0	31	86	3	86	20	40	0	40	1.52
11783390--11783443	23	2.4	23	82	11	60	40	9	9	40	1.69
11794404--11794444	19	2.1	19	86	4	55	36	0	4	58	1.20
11794526--11794614	40	2.2	40	85	0	115	37	14	12	35	1.84
11803973--11804001	7	4.1	7	100	0	58	13	27	0	58	1.36
11805000--11805060	29	2.1	28	81	3	68	26	14	16	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11805260--11805608	124	2.8	124	94	0	601	30	16	21	32	1.95
11807937--11808015	40	2.0	40	94	0	140	18	22	18	39	1.93
11808039--11808102	25	2.5	26	84	2	94	39	12	1	46	1.51
11809189--11809213	7	3.6	7	100	0	50	60	12	0	28	1.32
11810295--11810360	10	6.5	10	75	3	60	65	0	0	34	0.93
11810295--11810359	31	2.1	31	100	0	130	66	0	0	33	0.92
11810295--11810346	21	2.5	20	75	6	59	69	0	0	30	0.89
11810361--11810473	51	2.2	51	93	0	190	43	0	28	28	1.55
11810448--11810490	22	2.0	22	95	0	77	46	0	25	27	1.53
11812155--11812242	27	3.3	27	84	6	115	15	32	21	29	1.95
11812278--11812343	28	2.4	28	89	0	96	48	1	13	36	1.52
11813084--11813123	19	2.1	19	100	0	80	60	5	15	20	1.53
11813324--11813367	22	2.0	22	100	0	88	50	18	9	22	1.75
11816092--11816136	14	3.1	15	81	15	58	62	0	2	35	1.08
11822033--11822064	9	3.4	9	91	8	55	65	0	0	34	0.93
11822035--11822063	10	3.0	10	95	5	51	62	0	0	37	0.96
11822435--11822581	17	8.9	17	63	22	55	42	2	4	51	1.32
11840992--11841027	11	3.2	11	92	4	54	38	16	13	30	1.88
11841879--11841903	13	1.9	13	100	0	50	32	0	20	48	1.50
11843602--11843672	5	14.6	5	74	21	62	38	0	4	57	1.18
11843630--11843672	19	2.3	19	92	8	70	41	0	0	58	0.98
11844286--11844343	30	1.9	30	89	0	89	41	3	24	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11844555--11844586	13	2.5	13	94	0	55	31	0	12	56	1.37
11844681--11844922	50	4.7	50	86	4	297	26	24	29	19	1.99
11844681--11844930	100	2.4	103	88	6	364	26	24	29	20	1.99
11848606--11848819	45	4.8	45	85	0	239	32	18	18	30	1.95
11848606--11848819	90	2.4	90	83	0	266	32	18	18	30	1.95
11852355--11852525	88	2.0	87	90	3	272	28	15	14	42	1.85
11852902--11852953	22	2.3	22	75	21	54	57	0	7	34	1.27
11854700--11854755	18	3.1	18	81	0	76	28	8	21	41	1.83
11857622--11857705	17	4.9	17	78	5	89	25	8	20	46	1.78
11857617--11857713	34	2.9	34	75	6	88	27	8	19	44	1.79
11859925--11860023	35	2.8	35	84	0	117	39	30	15	15	1.88
11863232--11863289	30	2.0	29	86	10	82	65	1	3	29	1.19
11863253--11863297	23	2.0	23	82	8	56	64	4	2	28	1.25
11875396--11875436	18	2.2	19	86	4	57	53	4	4	36	1.44
11875501--11875530	15	2.0	15	93	0	51	36	33	3	26	1.73
11875733--11875877	69	2.1	70	87	3	204	34	14	15	35	1.88
11878091--11878119	10	2.7	11	94	5	51	79	0	20	0	0.74
11878088--11878119	16	2.0	16	93	0	55	78	0	21	0	0.76
11884488--11884627	70	2.0	70	98	0	271	45	20	11	23	1.83
11889536--11889570	2	17.5	2	93	0	61	48	0	51	0	1.00
11892120--11892483	130	2.8	130	98	0	701	33	11	15	39	1.84
11893534--11893592	25	2.4	25	97	0	109	28	10	18	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11893795--11893857	32	2.0	32	100	0	126	41	12	9	36	1.76
11893974--11894150	66	2.7	64	90	3	275	50	7	10	31	1.66
11895901--11896004	49	2.1	49	87	3	147	30	8	11	49	1.69
11897665--11897775	44	2.6	41	74	16	109	35	28	5	30	1.80
11897678--11897770	44	2.1	46	87	4	136	35	27	5	31	1.80
11900435--11900528	49	1.9	49	93	0	161	26	25	6	41	1.79
11901781--11901823	18	2.3	19	92	4	70	20	25	0	53	1.46
11908822--11908851	11	2.7	11	100	0	60	30	56	13	0	1.37
11913650--11913695	18	2.5	19	86	6	60	80	4	6	8	1.01
11916512--11916561	24	2.1	24	92	0	82	38	2	20	40	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126