genome.fa.s14.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  13  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3694328--3694365	14	2.4	16	83	16	53	42	21	0	36	1.53
3695626--3695651	9	2.9	9	100	0	52	11	11	7	69	1.37
3695658--3695696	16	2.4	16	91	4	60	48	2	0	48	1.15
3698869--3699363	17	26.6	18	67	16	192	44	9	13	32	1.76
3698984--3699025	21	2.0	22	90	4	68	47	9	2	40	1.49
3699087--3699238	75	2.0	75	83	2	189	45	7	12	34	1.71
3699193--3699361	87	1.9	87	81	9	202	44	8	13	32	1.75
3699643--3699680	16	2.4	16	86	8	51	63	0	2	34	1.09
3699838--3699898	10	6.2	10	84	5	72	1	19	0	78	0.83
3700000--3700067	23	3.0	23	82	8	77	1	23	8	66	1.28
3700193--3700249	14	4.3	14	74	19	50	0	24	0	75	0.80
3700197--3700255	6	9.3	6	80	10	64	0	25	0	74	0.82
3701635--3701667	3	11.0	3	100	0	66	33	0	0	66	0.92
3704453--3704504	27	1.9	27	96	0	95	21	17	3	57	1.55
3705215--3705262	18	2.6	17	75	15	51	81	6	0	12	0.87
3705215--3705256	17	2.4	17	85	14	59	80	7	0	11	0.88
3705228--3705273	23	2.0	23	86	4	65	80	6	2	10	0.98
3706111--3706144	13	2.7	12	86	13	50	82	0	5	11	0.83
3707374--3707969	86	7.0	87	86	7	695	27	22	24	25	2.00
3707381--3707976	165	3.5	170	85	7	685	27	22	24	25	2.00
3707724--3707936	44	4.9	44	70	12	143	26	23	24	24	2.00
3707674--3707936	88	3.0	89	88	5	360	27	22	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3708070--3708488	46	9.6	45	77	11	383	27	21	23	27	1.99
3708072--3708612	130	4.2	130	91	1	741	28	21	22	27	1.99
3708114--3708617	43	11.6	43	74	7	367	27	21	23	26	1.99
3709430--3709473	20	2.2	20	84	8	54	6	13	0	79	0.92
3711386--3711472	29	2.9	30	81	6	97	40	3	20	35	1.70
3711367--3711512	30	4.9	28	75	9	103	39	4	21	34	1.73
3717026--3717078	23	2.4	22	76	20	56	9	18	1	69	1.25
3723637--3723700	32	2.0	32	87	0	92	39	17	7	35	1.78
3725357--3725533	88	2.0	88	97	0	336	34	18	9	38	1.82
3725809--3725913	41	2.6	41	86	3	131	20	29	20	30	1.97
3725844--3725926	41	2.0	41	90	0	130	20	30	21	27	1.98
3725849--3725941	41	2.3	41	86	0	123	22	27	21	27	1.99
3726547--3726624	37	2.1	37	92	2	140	37	25	2	34	1.70
3727618--3727642	13	1.9	13	100	0	50	68	24	0	8	1.16
3734317--3734351	2	17.5	2	93	0	61	0	0	51	48	1.00
3737761--3737787	13	2.1	13	100	0	54	44	7	0	48	1.31
3738194--3738234	16	2.6	16	78	21	50	31	4	0	63	1.15
3741468--3741546	42	1.9	40	82	10	97	29	2	3	64	1.24
3742963--3743002	18	2.3	17	95	4	71	57	10	17	15	1.64
3743209--3743285	29	2.6	29	83	4	91	46	12	14	25	1.80
3745333--3745372	21	1.9	21	89	0	62	27	22	20	30	1.98
3745884--3745939	23	2.4	24	82	11	71	55	1	1	41	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3745951--3745998	23	2.1	23	100	0	96	45	16	20	16	1.85
3760001--3760247	90	2.8	87	79	9	232	17	11	17	53	1.72
3770790--3770830	21	2.0	21	90	0	64	19	29	21	29	1.98
3773944--3773981	17	2.2	17	86	9	51	34	0	13	52	1.40
3783538--3783599	27	2.2	28	97	2	117	40	6	0	53	1.27
3783653--3783729	27	2.9	27	82	7	104	25	23	31	19	1.98
3784302--3784360	19	3.2	19	85	4	84	38	11	0	49	1.40
3784576--3784641	29	2.3	27	80	10	78	46	4	0	48	1.22
3785036--3785106	28	2.6	27	91	4	108	43	0	9	46	1.37
3795230--3795341	45	2.5	43	74	5	107	30	25	25	18	1.98
3795359--3795940	50	11.7	50	73	5	433	30	24	20	24	1.99
3795346--3795880	49	10.8	48	72	10	348	31	23	20	24	1.98
3795346--3795947	100	6.0	100	89	0	834	31	23	20	24	1.98
3795959--3796375	126	3.4	125	87	7	517	30	16	23	29	1.96
3796161--3796375	112	1.9	112	90	0	340	30	16	26	26	1.96
3797765--3797872	3	36.3	3	71	12	71	30	5	2	61	1.33
3798090--3798118	14	2.0	15	93	6	51	31	0	6	62	1.22
3798467--3798512	18	2.5	18	82	10	58	19	0	8	71	1.11
3798630--3799051	109	3.9	109	85	4	568	31	17	17	33	1.93
3800287--3800315	3	9.7	3	100	0	58	68	0	31	0	0.89
3806949--3807254	117	2.6	117	87	7	413	39	12	13	34	1.82
3807462--3807581	64	1.9	63	94	1	213	41	8	7	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3807522--3807802	116	2.4	116	98	1	548	30	14	13	41	1.84
3816334--3816371	13	2.7	15	88	8	53	76	13	2	7	1.11
3817285--3817313	13	2.1	14	93	6	51	37	0	0	62	0.96
3817485--3817521	4	9.8	4	88	11	60	24	0	0	75	0.80
3821471--3821604	40	3.3	39	79	9	153	33	29	14	22	1.94
3824179--3824286	43	2.5	43	81	4	128	28	28	13	28	1.95
3830631--3830797	83	2.0	83	98	0	325	40	14	23	21	1.90
3835961--3835994	14	2.5	14	85	4	52	58	0	0	41	0.98
3835984--3836023	17	2.4	17	87	4	55	50	0	2	47	1.14
3837381--3837426	23	2.0	24	82	4	58	32	26	0	41	1.56
3837784--3837809	11	2.4	11	100	0	52	0	42	7	50	1.31
3838167--3838209	21	2.0	21	81	0	50	58	6	0	34	1.25
3838743--3838799	28	2.1	28	83	9	73	40	1	1	56	1.20
3846267--3846305	19	2.0	19	85	5	51	33	0	2	64	1.08
3846264--3846308	21	2.1	22	83	4	56	35	0	2	62	1.08
3855897--3855965	31	2.2	31	86	0	93	36	13	7	43	1.71
3857576--3857614	4	10.0	4	94	5	71	48	0	0	51	1.00
3860359--3860385	3	9.0	3	100	0	54	33	0	0	66	0.92
3861695--3861864	43	4.0	43	86	2	218	26	17	26	29	1.98
3863560--3863585	2	13.0	2	100	0	52	50	0	0	50	1.00
3865709--3865750	19	2.2	20	83	12	52	52	16	2	28	1.56
3867239--3867271	17	2.0	16	94	5	57	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3891184--3891236	16	3.1	17	84	10	63	47	0	0	52	1.00
3891177--3891236	16	3.6	16	77	18	61	50	0	0	50	1.00
3891949--3892061	19	5.8	19	82	4	145	42	9	12	35	1.76
3891950--3892066	59	2.0	58	86	5	164	43	9	11	35	1.73
3891949--3892061	40	2.9	38	84	5	154	42	9	12	35	1.76
3892812--3892861	25	2.0	26	88	4	75	32	8	4	56	1.47
3893533--3893729	98	2.0	98	94	0	349	28	10	24	36	1.88
3897583--3897631	21	2.4	19	87	12	71	87	6	0	6	0.66
3897586--3897625	21	2.0	21	95	5	73	87	7	0	5	0.66
3898797--3899671	132	6.6	132	92	0	1426	31	19	24	25	1.98
3899321--3899675	88	4.0	88	64	17	198	32	18	23	25	1.97
3899668--3899752	44	2.0	43	81	11	102	32	17	20	29	1.95
3899765--3900099	44	7.7	43	74	11	238	29	20	23	26	1.98
3899664--3900110	217	2.1	217	91	1	718	30	19	22	26	1.98
3900313--3900425	19	5.8	19	85	4	163	39	9	15	35	1.80
3900314--3900420	40	2.7	40	91	2	173	40	10	14	35	1.79
3900313--3900432	59	2.1	56	86	6	161	40	9	15	35	1.79
3900822--3900871	25	2.0	26	88	4	75	32	8	4	56	1.47
3904189--3904249	11	5.4	11	80	9	52	63	0	1	34	1.04
3904194--3904239	21	2.3	19	82	10	56	60	0	0	39	0.97
3904226--3904250	13	1.9	13	100	0	50	64	0	0	36	0.94
3904203--3904250	21	2.3	21	82	13	55	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3906515--3906550	10	3.6	10	92	0	54	83	0	13	2	0.76
3906705--3906780	28	2.6	28	79	10	82	30	2	2	64	1.21
3906708--3906780	27	2.6	29	80	12	80	28	2	2	65	1.20
3906744--3906787	20	2.2	20	87	0	61	34	0	2	63	1.07
3910719--3910787	23	3.0	23	100	0	138	39	13	30	17	1.87
3912647--3912726	31	2.7	30	72	12	74	22	16	15	46	1.84
3912746--3912920	31	5.8	31	70	13	114	23	20	17	38	1.93
3912793--3912897	29	3.6	28	76	10	93	19	17	20	42	1.89
3912763--3912918	60	2.6	60	84	0	204	20	19	19	39	1.92
3912924--3913048	31	4.1	31	77	6	119	24	19	14	41	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126