genome.fa.s14.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  46  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13374378--13374562	44	4.2	44	61	15	112	34	19	19	27	1.96
13374234--13374718	132	3.7	132	93	0	756	32	18	22	26	1.97
13374711--13375374	217	3.1	217	90	2	1046	30	20	22	26	1.98
13374711--13375369	44	15.2	44	68	13	273	30	20	22	27	1.98
13375167--13375359	84	2.2	86	82	11	218	27	21	24	26	1.99
13375577--13375651	19	3.8	19	79	6	96	38	14	14	32	1.87
13376948--13377141	98	2.0	98	93	0	334	28	10	24	37	1.88
13378984--13379186	46	4.6	44	69	20	147	32	23	16	28	1.96
13378908--13379187	130	2.1	130	99	0	551	32	23	17	26	1.97
13379042--13379482	172	2.5	172	91	2	706	29	24	19	27	1.98
13379382--13379535	40	3.8	40	77	13	170	31	24	20	24	1.98
13379030--13379750	83	8.4	82	70	11	464	29	23	19	27	1.98
13379470--13379841	172	2.2	172	91	0	609	29	22	19	27	1.98
13379215--13379750	255	2.1	255	92	0	885	29	22	20	27	1.99
13379030--13379841	427	1.9	429	89	2	1263	29	23	19	27	1.98
13379727--13379877	44	3.4	43	75	16	130	29	25	17	26	1.98
13379764--13379878	45	2.6	47	76	17	127	28	26	18	26	1.98
13379159--13379896	83	8.6	89	73	11	273	28	23	19	28	1.98
13387888--13387933	24	1.9	24	86	0	65	10	26	17	45	1.81
13398988--13399134	74	2.0	74	98	0	285	44	14	19	22	1.86
13408518--13408551	18	1.9	18	88	5	52	58	14	23	2	1.50
13408614--13408672	23	2.6	22	79	15	66	32	1	6	59	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13408625--13408672	23	2.1	23	88	7	71	31	2	8	58	1.39
13409283--13409328	18	2.4	20	89	7	69	39	6	28	26	1.81
13411492--13411553	10	6.3	10	78	12	58	77	0	6	16	0.97
13411492--13411544	21	2.6	21	88	5	83	79	0	5	15	0.91
13411492--13411552	14	4.5	13	74	15	52	78	0	6	14	0.94
13418713--13418847	37	3.7	37	69	13	89	34	16	16	33	1.91
13419125--13419158	14	2.4	14	95	0	59	29	11	11	47	1.76
13420500--13420546	20	2.4	19	83	13	60	80	2	2	14	0.89
13425767--13425951	79	2.3	81	83	7	227	24	22	27	24	2.00
13425768--13425951	40	4.6	40	82	9	207	25	22	27	24	2.00
13425820--13425984	79	2.1	79	83	6	201	26	21	27	24	1.99
13434234--13434417	40	4.6	41	81	12	208	25	22	27	25	2.00
13434234--13434417	79	2.3	81	82	11	222	25	22	27	25	2.00
13434286--13434450	79	2.1	79	82	8	194	26	21	27	24	1.99
13441473--13441579	43	2.5	43	84	4	128	46	4	24	24	1.71
13445503--13446168	333	2.0	333	98	0	1280	24	18	21	36	1.95
13448585--13448773	78	2.4	78	82	3	220	20	13	26	39	1.90
13448585--13448783	26	7.7	26	79	0	191	21	14	26	38	1.91
13449276--13449767	246	2.0	246	99	0	966	34	17	9	39	1.81
13452835--13452901	27	2.6	26	77	15	75	44	1	14	38	1.55
13452855--13452916	13	4.8	13	72	7	54	43	0	17	38	1.49
13452835--13452901	26	2.6	26	81	11	75	44	1	14	38	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13456642--13456811	55	3.2	53	76	12	152	45	19	12	22	1.83
13456693--13456785	27	3.4	28	83	8	129	49	20	12	17	1.79
13457149--13457293	28	5.2	28	86	5	188	23	24	22	30	1.99
13466763--13466864	27	3.8	26	76	7	73	29	14	19	36	1.92
13466802--13466868	27	2.5	27	85	9	84	26	14	17	40	1.89
13478386--13478483	27	3.5	28	90	2	135	26	13	28	31	1.94
13478414--13478496	27	3.0	27	87	5	96	30	12	25	32	1.92
13478386--13478497	28	4.0	27	83	6	98	28	12	25	33	1.92
13480213--13480347	28	4.8	28	93	0	207	28	22	23	24	1.99
13480458--13480515	26	2.2	26	84	0	80	37	20	18	22	1.94
13480707--13481054	27	12.9	27	80	1	322	20	18	21	39	1.92
13480706--13481054	81	4.3	81	78	7	361	20	18	21	39	1.92
13483059--13483554	27	18.4	26	81	5	499	19	15	21	43	1.88
13485724--13485802	40	2.0	40	87	5	115	22	27	15	34	1.94
13486935--13487339	201	2.0	201	98	0	783	32	18	20	29	1.96
13488997--13489202	80	2.6	80	85	1	270	22	26	17	33	1.96
13489074--13489139	20	3.3	20	75	8	71	19	33	19	27	1.96
13488997--13489202	40	5.2	40	82	4	229	22	26	17	33	1.96
13492006--13492037	14	2.3	14	94	0	55	9	15	43	31	1.78
13497131--13497162	14	2.3	14	100	0	64	6	15	46	31	1.71
13497346--13497395	25	2.0	25	96	0	91	54	6	12	28	1.60
13502989--13503073	30	2.9	29	82	5	109	34	22	20	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13503178--13503251	26	2.8	26	97	0	139	40	28	20	10	1.86
13503429--13503679	27	9.4	25	80	8	232	19	21	17	42	1.89
13503429--13503679	54	4.7	53	80	6	274	19	21	17	42	1.89
13510581--13510627	21	2.2	22	92	3	78	21	19	38	21	1.94
13521830--13522201	136	2.7	135	87	3	505	32	26	20	21	1.97
13527390--13527479	29	3.1	29	83	1	101	25	24	13	36	1.92
13538958--13539304	113	3.1	112	77	8	312	23	22	23	29	1.99
13539300--13539327	14	2.0	14	100	0	56	35	21	21	21	1.96
13539654--13539702	18	2.5	21	80	9	59	61	10	2	26	1.39
13540763--13541510	231	3.2	230	89	2	1115	28	17	20	33	1.95
13541838--13541881	19	2.3	19	80	0	52	31	40	2	25	1.68
13542978--13543042	18	3.6	18	68	12	60	56	3	3	36	1.30
13543515--13543546	12	2.6	13	85	14	50	31	0	3	65	1.08
13543661--13543769	37	2.9	37	91	0	173	47	11	5	35	1.62
13543751--13543789	20	2.0	20	94	0	69	43	5	5	46	1.48
13543801--13543936	9	16.0	9	71	13	101	44	21	2	31	1.64
13543801--13543960	34	4.4	34	70	16	115	43	22	1	32	1.64
13543802--13543936	25	5.3	25	76	7	121	45	21	2	31	1.64
13548538--13548604	21	3.2	21	86	0	89	29	19	47	2	1.64
13548832--13548865	14	2.4	14	95	0	59	11	8	20	58	1.59
13549130--13549280	42	3.6	43	74	4	110	29	20	18	31	1.96
13549305--13549603	42	7.1	42	84	3	269	30	20	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13549486--13549605	43	2.8	42	91	1	186	20	23	22	33	1.97
13549923--13550056	66	2.0	66	92	0	223	44	7	7	40	1.61
13550615--13550666	27	1.9	27	84	0	68	19	15	9	55	1.67
13577426--13577473	10	4.8	10	80	10	53	41	2	0	56	1.11
13580368--13580406	21	1.9	21	89	5	62	33	25	0	41	1.56
13582710--13582756	24	2.0	24	95	0	85	36	8	17	38	1.80
13582711--13582762	24	2.2	24	89	0	77	40	9	13	36	1.77
13582827--13582916	24	3.8	24	73	2	74	34	7	15	42	1.76
13583679--13583705	13	2.1	13	100	0	54	29	0	22	48	1.51
13584835--13584974	42	3.3	43	77	7	124	26	14	26	32	1.94
13586280--13586463	40	4.6	40	83	6	205	23	21	27	27	1.99
13586280--13586460	80	2.3	81	84	9	230	23	21	27	27	1.99
13594166--13594386	40	5.5	40	91	5	342	23	22	27	26	1.99
13594166--13594425	120	2.2	120	84	8	343	23	21	27	26	1.99
13596880--13596912	16	2.0	17	88	5	50	27	3	18	51	1.60
13599885--13599917	15	2.2	15	100	0	66	54	9	0	36	1.32
13602105--13602159	28	1.9	29	81	3	67	29	3	0	67	1.08
13605968--13606021	24	2.2	25	83	9	67	18	3	5	72	1.20
13605963--13606023	25	2.4	25	76	20	63	19	3	4	72	1.18
13609188--13609364	45	4.0	45	79	2	171	32	23	16	27	1.96
13617192--13617269	29	2.7	28	84	11	104	25	14	30	29	1.94
13617222--13617549	174	1.9	174	96	0	602	30	14	24	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13621468--13621511	23	1.9	22	82	17	54	38	22	0	38	1.55
13621675--13621875	51	4.0	51	77	8	212	29	28	17	24	1.97
13621679--13621867	101	1.9	102	83	4	231	30	26	17	24	1.97
13641061--13641107	21	2.2	21	84	0	58	14	14	27	42	1.86
13651097--13651266	27	6.3	27	86	0	214	19	16	21	42	1.89
13651097--13651266	54	3.1	54	85	0	241	19	16	21	42	1.89
13654525--13654563	13	2.7	15	76	15	55	25	25	25	23	2.00
13662323--13662360	12	2.9	13	84	11	51	47	5	7	39	1.55
13662450--13662483	14	2.4	14	90	0	50	52	0	23	23	1.47
13665248--13665375	18	6.8	19	72	18	76	65	1	1	31	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126