genome.fa.s14.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  41  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11919733--11919768	17	2.1	18	89	5	56	55	25	0	19	1.43
11923032--11923091	18	3.3	18	76	19	54	26	3	0	70	1.03
11933265--11933294	15	1.9	16	93	6	53	73	0	6	20	1.05
11933645--11933690	20	2.3	20	85	7	58	23	15	19	41	1.89
11935949--11935999	20	2.5	21	84	9	70	27	29	15	27	1.96
11936432--11936479	21	2.3	21	82	7	53	33	4	16	45	1.67
11940909--11940956	21	2.3	21	82	7	53	33	4	16	45	1.67
11943789--11943861	23	3.2	23	82	0	83	19	16	27	36	1.93
11950896--11951005	23	4.7	23	82	3	105	40	17	13	29	1.88
11951292--11951336	22	2.0	22	82	0	54	57	20	6	15	1.60
11953222--11953267	11	4.2	11	89	10	76	69	8	2	19	1.25
11953226--11953264	10	3.7	10	80	12	51	76	7	2	12	1.09
11953225--11953266	22	1.9	22	100	0	84	76	7	2	14	1.10
11959079--11959157	24	3.3	24	94	1	133	48	11	16	24	1.79
11959078--11959143	12	5.5	12	75	0	69	50	10	15	24	1.75
11960849--11960874	2	13.0	2	100	0	52	0	0	50	50	1.00
11966779--11966834	24	2.2	25	78	15	62	66	3	1	28	1.19
11966806--11966854	21	2.3	22	75	10	57	63	2	2	32	1.17
11971612--11971751	70	2.0	70	100	0	280	30	11	11	47	1.75
11975415--11975447	17	1.9	17	93	0	57	60	12	9	18	1.57
11975560--11975604	21	2.2	20	84	4	54	2	28	4	64	1.25
11984013--11984045	17	2.0	17	94	5	59	72	15	0	12	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11986224--11986250	14	1.9	14	100	0	54	33	0	7	59	1.25
11986303--11986352	25	2.0	25	88	0	73	42	18	2	38	1.61
11992871--11992920	25	2.0	25	92	0	82	48	6	22	24	1.73
11996216--11996245	14	2.1	14	100	0	60	46	0	20	33	1.51
11997943--11998024	28	2.9	28	83	1	101	39	24	23	13	1.90
12000490--12000607	43	2.7	43	82	7	132	21	19	27	32	1.97
12003446--12003543	29	3.4	29	75	9	92	42	22	21	13	1.87
12003524--12003584	18	3.4	18	80	8	79	36	16	26	21	1.94
12003524--12003593	36	1.9	36	94	0	122	37	17	24	21	1.94
12006832--12006870	20	2.0	20	100	0	78	41	0	0	58	0.98
12020754--12020828	38	2.0	38	86	0	105	16	14	32	37	1.89
12020815--12020843	15	1.9	15	100	0	58	10	13	34	41	1.79
12021113--12021145	12	2.8	12	100	0	66	42	0	0	57	0.98
12021477--12022055	287	2.0	287	97	0	1095	28	11	18	42	1.84
12030260--12030490	38	6.1	37	78	5	219	20	19	25	35	1.95
12030294--12030498	76	2.7	76	84	4	252	20	18	25	36	1.94
12030266--12030489	114	2.0	114	83	3	281	19	19	25	35	1.95
12032738--12032957	50	4.3	50	85	3	260	26	21	29	22	1.99
12032786--12032980	100	2.0	100	81	2	230	27	20	30	21	1.98
12037020--12037190	50	3.4	50	89	0	243	25	22	31	21	1.98
12040077--12040132	21	2.5	22	85	8	78	69	1	0	28	0.98
12040077--12040318	17	12.7	19	67	20	80	66	2	2	29	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12040039--12040326	9	31.7	9	69	20	99	65	2	1	30	1.15
12040127--12040185	19	3.3	18	84	11	68	64	1	6	27	1.28
12040171--12040276	34	3.2	33	75	15	101	66	1	0	32	1.03
12040213--12040298	13	6.4	13	69	20	52	69	1	0	29	0.96
12040212--12040327	56	2.0	58	86	6	166	68	1	0	28	1.05
12040987--12041047	31	2.0	31	87	6	88	40	1	0	57	1.08
12040987--12041066	10	8.2	10	70	19	62	38	2	0	58	1.11
12041037--12041079	18	2.3	18	84	11	52	32	4	2	60	1.30
12041277--12041315	20	2.0	20	94	0	69	33	0	0	66	0.92
12041877--12041931	17	3.1	18	79	10	60	63	0	0	36	0.95
12044311--12044345	18	1.9	18	88	0	52	34	0	2	62	1.10
12047305--12047455	74	2.0	74	98	0	293	35	19	14	30	1.91
12047966--12048183	97	2.2	97	87	2	312	29	15	24	29	1.96
12050829--12050858	6	5.0	6	100	0	60	33	0	16	50	1.46
12073590--12073662	38	1.9	37	86	8	103	31	21	1	45	1.61
12073650--12073693	23	1.9	22	82	17	54	38	22	0	38	1.55
12073792--12073844	23	2.3	23	90	0	88	33	24	20	20	1.97
12078321--12078425	42	2.5	42	93	0	174	18	39	23	19	1.92
12078868--12078906	20	2.0	20	90	10	62	51	30	5	12	1.62
12079994--12080115	25	4.9	25	83	2	156	29	18	22	29	1.97
12080004--12080132	49	2.6	50	85	2	161	30	20	22	27	1.98
12079994--12080132	25	5.6	25	83	1	136	29	19	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12094756--12094809	28	1.9	29	85	7	76	33	5	7	53	1.52
12095889--12095917	14	2.1	14	100	0	58	58	13	6	20	1.58
12097514--12097593	33	2.4	34	89	2	117	37	13	22	26	1.91
12098314--12098348	18	1.9	18	88	0	52	31	28	14	25	1.95
12104891--12104982	23	3.9	23	76	15	71	21	25	21	31	1.98
12104901--12105000	23	4.2	23	81	11	94	24	25	23	28	2.00
12108155--12108223	23	3.0	23	73	12	70	20	26	20	33	1.97
12110159--12110250	23	3.9	23	76	15	71	21	25	21	31	1.98
12110169--12110250	23	3.4	23	86	5	92	21	25	21	30	1.99
12118635--12118751	29	4.1	29	85	2	146	42	2	10	44	1.52
12118687--12118751	14	4.6	14	81	14	80	44	1	7	46	1.41
12118635--12118751	57	2.0	58	83	1	146	42	2	10	44	1.52
12128906--12128947	20	2.0	21	86	4	59	33	16	28	21	1.95
12130930--12130966	19	1.9	20	88	5	58	37	8	10	43	1.69
12133916--12133952	18	2.1	18	94	0	65	29	0	24	45	1.53
12133921--12133962	18	2.3	18	84	8	50	28	2	28	40	1.69
12146698--12146961	40	6.7	40	89	5	360	25	27	21	25	1.99
12155742--12156003	39	6.7	40	88	7	337	24	27	22	25	2.00
12159847--12159934	27	3.2	27	95	3	149	29	0	0	70	0.88
12159816--12159896	40	2.1	38	90	9	128	28	2	0	69	1.02
12159815--12159923	9	11.6	9	69	14	69	29	1	0	68	1.00
12159847--12159934	28	3.1	28	96	3	160	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12159815--12159971	68	2.3	67	85	7	201	33	1	0	64	1.05
12159814--12159887	19	3.8	19	76	13	87	29	2	0	67	1.04
12163950--12164124	45	3.9	45	85	1	237	29	16	21	33	1.95
12172010--12172105	27	3.5	27	67	10	68	54	4	4	37	1.39
12175154--12175205	23	2.3	23	86	0	68	36	15	7	40	1.76
12178797--12178956	20	7.8	20	70	12	92	44	12	7	35	1.71
12182587--12182621	17	1.9	19	88	11	56	57	0	22	20	1.41
12185345--12185387	22	2.0	22	85	0	59	37	0	9	53	1.33
12185541--12185587	24	2.0	24	100	0	94	25	25	8	40	1.84
12193612--12193642	9	3.3	9	95	4	53	58	0	0	41	0.98
12194060--12194130	37	1.9	37	83	11	92	39	2	2	54	1.29
12199346--12199421	6	12.3	6	79	5	53	72	5	3	18	1.19
12211343--12211367	12	2.1	12	100	0	50	60	16	0	24	1.36
12213415--12213441	6	4.5	6	100	0	54	14	0	0	85	0.61
12222297--12222360	26	2.6	25	76	14	69	42	9	14	34	1.77
12226252--12226301	23	2.2	23	89	3	75	34	8	16	42	1.77
12228610--12228663	5	10.6	5	88	4	81	0	22	1	75	0.89
12244645--12244736	39	2.3	39	88	5	132	25	28	22	23	2.00
12244626--12244789	40	4.1	40	80	10	176	24	27	23	25	2.00
12264431--12264468	18	2.1	18	100	0	76	42	10	10	36	1.74
12288758--12288847	10	9.0	10	74	15	62	62	1	2	34	1.15
12288751--12288804	20	2.5	22	79	11	67	66	0	1	31	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12293377--12293411	17	2.1	16	94	5	61	34	5	20	40	1.76
12302721--12302762	13	2.8	15	80	20	52	35	0	0	64	0.94
12303645--12303765	61	2.0	61	85	6	165	39	14	7	38	1.74
12306623--12306990	189	1.9	189	92	0	619	27	25	14	33	1.94
12308351--12308384	17	2.0	17	100	0	68	47	11	11	29	1.76
12319338--12319377	20	2.0	20	85	0	53	27	5	10	57	1.52
12324656--12324760	52	2.0	52	98	0	201	29	14	30	25	1.95
12329695--12329869	46	3.8	46	96	0	314	20	21	29	29	1.98
12334128--12334279	27	5.6	27	92	3	232	28	13	28	29	1.94
12334128--12334279	55	2.8	55	91	2	234	28	13	28	29	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126