genome.fa.s14.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  50  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14562390--14562526	39	3.5	39	87	0	193	29	21	24	24	1.99
14566061--14566126	27	2.4	27	87	5	89	31	22	13	31	1.93
14567688--14567913	48	4.8	48	82	6	209	26	19	24	29	1.98
14567721--14567914	96	2.0	96	82	7	234	25	19	26	29	1.98
14567884--14567953	36	1.9	37	91	2	115	28	17	27	27	1.97
14569476--14569743	46	5.8	46	78	15	300	29	29	20	20	1.98
14569484--14569748	93	2.8	93	97	0	485	28	30	21	20	1.98
14581408--14581583	67	2.6	67	98	0	334	30	20	27	21	1.98
14583990--14584215	46	4.7	48	74	11	146	23	28	19	29	1.98
14595873--14595923	15	3.5	14	83	5	57	60	19	5	13	1.53
14599815--14599944	54	2.4	54	92	0	206	31	24	16	26	1.97
14602182--14602336	43	3.6	42	83	4	168	21	16	27	34	1.95
14606089--14606208	44	2.7	43	84	6	145	25	15	27	31	1.96
14607645--14607952	40	7.7	40	96	0	517	21	26	20	31	1.98
14616266--14616533	40	6.7	40	95	0	464	21	26	20	31	1.98
14621122--14621160	19	2.1	19	85	0	51	71	7	5	15	1.26
14625685--14625767	34	2.5	33	82	5	94	25	22	25	26	2.00
14636146--14636290	40	3.6	40	84	4	184	24	26	24	24	2.00
14641175--14641387	45	4.9	45	78	6	179	32	26	17	23	1.96
14642246--14642288	20	2.3	19	80	8	52	48	11	0	39	1.40
14659385--14659503	43	2.8	41	75	12	114	31	25	16	26	1.97
14660844--14660974	47	2.8	47	87	2	174	21	16	28	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14662621--14662661	20	2.0	20	85	4	55	48	14	7	29	1.71
14665602--14665754	23	6.7	23	80	3	164	25	19	24	30	1.98
14665602--14665754	69	2.2	69	83	2	182	25	19	24	30	1.98
14668037--14668117	27	3.0	27	87	3	110	33	22	18	25	1.97
14668102--14668469	27	13.7	27	77	9	216	41	19	7	31	1.78
14668102--14668171	26	2.7	27	80	6	90	41	17	5	35	1.73
14668153--14668383	53	4.3	53	75	7	173	43	19	6	29	1.76
14668190--14668466	82	3.4	80	80	8	267	42	19	6	31	1.77
14668153--14668469	82	3.9	82	78	8	240	42	19	7	30	1.78
14668707--14668829	41	3.0	41	92	0	201	20	21	30	27	1.98
14671032--14671075	8	5.5	8	80	0	52	47	20	22	9	1.78
14671033--14671083	16	3.2	16	91	0	84	50	21	19	7	1.72
14671294--14671418	29	4.3	29	86	1	171	27	13	29	29	1.94
14672675--14672765	27	3.4	25	77	8	92	28	23	7	40	1.82
14672764--14672923	27	5.9	27	78	10	148	40	19	9	30	1.83
14672797--14672946	81	1.9	81	87	2	221	43	20	6	30	1.77
14672797--14672947	27	5.6	27	84	7	173	43	20	6	29	1.77
14672925--14673002	29	2.8	28	75	19	81	43	16	7	32	1.76
14673051--14673124	27	2.7	27	76	12	71	37	20	20	21	1.94
14673064--14673128	27	2.4	27	82	5	78	35	18	24	21	1.96
14673937--14674006	25	2.8	24	86	4	86	25	28	22	22	1.99
14674154--14674245	42	2.2	42	96	0	166	32	14	20	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14674214--14674366	76	2.0	76	100	0	306	31	20	22	26	1.98
14674345--14674451	31	3.5	31	89	2	153	31	19	23	25	1.98
14678891--14678934	19	2.4	18	85	7	54	40	9	0	50	1.34
14679925--14679958	18	1.9	18	88	5	52	41	11	17	29	1.85
14681727--14681761	17	2.1	17	94	0	61	51	37	5	5	1.50
14682999--14683051	16	3.3	16	87	7	72	54	20	16	7	1.66
14683265--14683320	28	2.0	29	89	3	87	21	14	35	28	1.92
14692010--14692181	93	1.8	93	92	2	292	28	30	21	19	1.98
14692002--14692177	46	3.8	46	80	11	207	29	29	21	19	1.98
14692053--14692196	46	3.1	45	74	11	139	29	29	20	20	1.98
14694563--14694651	30	3.0	30	79	11	94	56	15	17	10	1.67
14694563--14694645	15	5.6	14	73	10	58	55	16	18	9	1.68
14694574--14694651	15	5.2	15	75	9	70	55	15	17	11	1.69
14696636--14696780	40	3.6	40	82	4	166	27	24	24	23	2.00
14700803--14700974	93	1.8	93	92	0	290	27	31	21	19	1.97
14700795--14700970	46	3.8	46	80	10	205	28	30	21	19	1.97
14706972--14707038	33	2.0	34	88	2	100	26	19	22	31	1.98
14711266--14711473	67	3.2	64	76	13	192	25	27	15	31	1.95
14711965--14712023	29	2.0	29	83	0	73	28	27	6	37	1.82
14715691--14715783	26	3.7	25	81	5	98	26	25	21	25	1.99
14715698--14715796	26	3.9	26	77	6	80	29	24	20	26	1.99
14716004--14716105	31	3.3	31	92	0	177	35	23	22	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14718090--14718114	12	2.1	12	100	0	50	40	0	8	52	1.31
14720155--14720202	25	1.9	25	86	0	69	31	22	16	29	1.96
14720284--14720325	20	2.1	20	86	0	57	40	11	16	30	1.85
14720292--14720329	20	2.0	19	85	10	51	36	10	21	31	1.87
14720372--14720466	25	3.8	25	81	4	111	26	23	24	26	2.00
14722019--14722203	40	4.7	40	82	6	216	24	27	23	24	2.00
14722021--14722203	79	2.3	81	82	7	214	24	27	23	24	2.00
14723745--14723827	31	2.7	31	94	3	143	28	26	15	28	1.96
14724047--14724116	25	2.8	25	86	4	88	27	25	21	25	1.99
14724931--14725003	27	2.7	27	77	12	69	20	20	21	36	1.95
14725044--14725141	27	3.6	27	77	15	110	32	10	18	38	1.84
14725107--14725230	27	4.6	27	83	6	128	29	7	20	42	1.79
14725253--14725336	26	3.2	26	83	11	100	41	11	17	28	1.85
14725262--14725352	27	3.4	27	83	4	114	41	10	20	26	1.86
14725879--14725989	54	2.1	54	100	0	222	23	31	18	27	1.97
14726648--14726727	31	2.6	31	91	0	133	33	21	26	18	1.96
14728240--14728423	64	2.8	64	88	4	244	30	15	28	25	1.96
14728245--14728473	64	3.5	64	84	6	219	32	16	28	22	1.95
14735924--14736013	33	2.7	33	89	0	135	26	18	23	31	1.98
14748026--14748103	29	2.7	28	84	11	104	25	15	30	28	1.96
14748081--14748386	145	2.1	145	96	0	567	29	15	24	31	1.95
14748224--14748560	174	1.9	174	98	0	647	28	14	25	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14748056--14748673	319	1.9	319	95	0	1128	29	14	24	31	1.95
14748398--14748672	145	1.9	145	96	0	514	29	14	24	31	1.95
14752143--14752169	9	3.0	9	100	0	54	55	0	22	22	1.44
14754568--14755648	1	1081.0	1	99	0	2153	99	0	0	0	0.00
14756889--14757188	40	7.5	40	73	7	236	18	26	18	37	1.94
14756929--14757158	80	2.9	80	83	3	266	19	24	19	37	1.94
14756889--14757192	80	3.8	80	79	4	260	18	25	18	37	1.93
14760488--14760530	20	2.2	20	91	0	68	39	0	18	41	1.51
14760577--14760825	35	7.2	34	64	19	104	27	19	22	30	1.98
14760598--14760852	137	1.8	139	83	7	340	27	20	20	30	1.98
14760586--14760886	137	2.2	139	79	6	326	29	21	19	30	1.97
14760564--14760956	207	1.9	207	84	4	524	28	20	20	30	1.98
14760564--14761000	70	6.3	70	77	6	343	27	20	21	30	1.98
14765417--14765481	26	2.5	26	87	0	103	33	16	24	24	1.96
14765538--14765806	32	8.4	31	80	4	254	38	21	19	20	1.94
14765538--14765806	130	2.1	128	82	8	334	38	21	19	20	1.94
14765805--14765859	26	2.1	26	86	0	74	34	21	23	20	1.97
14765853--14765904	27	1.9	27	85	14	72	28	15	30	25	1.96
14766021--14766064	23	1.9	23	90	9	72	50	22	4	22	1.67
14766104--14766590	27	18.0	28	77	9	408	19	17	20	41	1.90
14766111--14766251	53	2.6	53	84	7	178	19	17	21	41	1.91
14766166--14766578	81	5.1	81	85	5	469	19	18	20	42	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14771378--14771424	20	2.3	20	92	0	76	40	2	14	42	1.58
14771494--14771766	70	3.9	71	78	4	270	23	21	22	32	1.98
14771451--14771737	140	2.1	138	82	5	337	25	20	20	33	1.97
14771494--14771808	70	4.5	71	78	4	221	23	21	22	33	1.98
14771449--14771810	140	2.6	140	77	4	306	25	20	20	33	1.97
14788348--14788394	21	2.2	21	96	0	85	6	48	19	25	1.72
14789998--14791020	40	25.6	40	97	0	1836	27	27	20	24	1.99
14790952--14791029	40	1.9	41	82	10	97	26	28	21	23	1.99
14791934--14791962	12	2.3	13	94	5	51	55	0	20	24	1.44
14794074--14794652	289	2.0	289	100	0	1158	23	14	12	49	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126