genome.fa.s46.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  10  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1520069--1520108	17	2.3	18	86	8	64	55	0	5	40	1.22
1520772--1520796	2	12.5	2	100	0	50	0	48	0	52	1.00
1520948--1520983	18	1.9	19	88	5	56	13	8	8	69	1.36
1526458--1526527	2	35.5	2	97	2	133	0	50	0	50	1.00
1528984--1529012	15	1.9	15	100	0	58	31	0	27	41	1.56
1532514--1532565	27	1.9	28	84	7	72	57	5	1	34	1.33
1532841--1532878	9	4.3	9	81	18	53	60	2	0	36	1.11
1532827--1532881	24	2.3	22	77	22	58	56	1	0	41	1.10
1534944--1534994	20	2.5	20	77	0	57	47	0	1	50	1.12
1540144--1540248	47	2.2	47	87	0	147	28	13	18	40	1.88
1540954--1541022	36	1.9	36	87	0	102	55	4	20	20	1.60
1541548--1541617	30	2.3	32	73	9	83	34	7	4	54	1.47
1542488--1542515	12	2.3	12	100	0	56	42	0	7	50	1.30
1542950--1542999	26	1.9	26	84	8	66	58	4	4	34	1.36
1547183--1547207	13	1.9	13	100	0	50	72	0	4	24	1.02
1554714--1554774	21	3.0	20	75	15	63	75	1	0	22	0.89
1554742--1554816	14	5.0	14	75	22	64	66	0	1	32	1.00
1554716--1554814	46	2.1	47	82	12	116	69	1	1	28	1.01
1554744--1554816	23	3.1	24	78	11	89	65	0	1	32	1.01
1554783--1554815	17	1.9	17	93	0	57	63	0	0	36	0.95
1554754--1554815	8	8.0	8	79	12	51	64	0	1	33	1.03
1557000--1557046	22	2.1	22	84	4	58	57	2	0	40	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1558487--1558524	17	2.2	17	95	0	67	55	31	0	13	1.38
1558487--1558535	17	2.9	17	82	8	57	53	30	0	16	1.43
1560198--1560229	11	2.9	11	100	0	64	84	0	6	9	0.78
1564414--1564474	1	61.0	1	73	0	50	86	0	9	3	0.67
1564414--1564472	7	7.9	7	80	19	57	86	0	10	3	0.68
1564414--1564474	13	4.6	13	80	10	61	86	0	9	3	0.67
1564414--1564475	31	2.0	31	87	6	90	85	0	11	3	0.71
1564414--1564473	24	2.5	24	86	7	79	86	0	10	3	0.67
1566768--1566860	41	2.3	41	87	7	127	34	19	17	29	1.94
1567444--1567517	23	3.3	23	75	3	69	31	20	14	33	1.93
1567455--1567511	22	2.5	23	80	2	71	28	26	17	28	1.98
1567244--1567919	222	3.1	222	84	4	852	25	18	15	40	1.90
1567496--1567681	88	2.1	89	84	3	241	26	19	12	40	1.88
1567802--1568363	110	5.1	110	85	3	664	22	19	17	40	1.91
1568110--1568153	22	2.0	22	86	0	61	31	18	15	34	1.92
1568220--1568262	22	2.0	22	81	9	52	30	23	16	30	1.96
1568324--1568382	23	2.6	23	83	2	75	28	20	18	32	1.96
1568346--1568587	109	2.2	109	82	2	308	22	19	20	36	1.95
1568785--1568811	3	9.0	3	100	0	54	66	0	0	33	0.92
1568804--1568858	22	2.5	22	80	8	69	61	0	0	38	0.96
1568904--1569013	45	2.4	45	90	0	166	25	49	12	12	1.76
1572379--1572411	16	2.1	16	88	5	50	69	9	0	21	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1572694--1572908	115	1.9	114	91	2	351	39	17	12	31	1.86
1573794--1573836	20	2.1	21	86	4	61	27	18	11	41	1.85
1574665--1574702	20	1.9	20	88	0	58	47	26	10	15	1.78
1574677--1574741	33	2.0	32	82	8	78	46	26	9	18	1.79
1574702--1574784	19	4.3	19	80	4	87	40	26	8	24	1.83
1574698--1574780	20	4.2	20	81	6	89	42	27	8	21	1.82
1576760--1576789	15	1.9	16	93	6	53	73	0	13	13	1.10
1577608--1577641	14	2.6	14	90	9	54	11	0	5	82	0.83
1577681--1577727	19	2.4	19	82	13	60	68	0	4	27	1.08
1577759--1577815	26	2.3	26	81	6	64	42	1	10	45	1.49
1581724--1581759	18	2.1	17	89	5	54	83	2	13	0	0.76
1582119--1582155	16	2.3	16	90	9	58	78	0	16	5	0.93
1582118--1582164	16	2.8	16	75	25	51	78	0	14	6	0.93
1582117--1582179	25	2.4	25	87	10	83	74	0	19	6	1.02
1583325--1583618	21	13.1	21	71	16	146	36	10	14	38	1.80
1583346--1583554	46	4.5	46	85	0	283	36	11	14	37	1.82
1583565--1583598	10	3.4	10	91	0	59	32	8	20	38	1.84
1583544--1583623	43	1.9	42	92	5	135	35	7	17	40	1.78
1583667--1583874	107	2.0	107	82	0	256	37	11	17	34	1.86
1584094--1584450	81	4.5	79	79	4	340	25	14	15	45	1.84
1584094--1584451	40	8.9	40	77	4	301	25	14	15	44	1.84
1584096--1584494	81	4.9	80	76	9	292	25	14	15	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1584416--1584519	43	2.4	43	83	6	120	25	11	14	48	1.78
1584789--1584843	15	3.7	15	79	18	53	12	0	9	78	0.97
1589396--1589445	24	2.0	26	92	7	86	52	12	4	32	1.57
1592025--1592057	17	1.9	17	100	0	66	45	12	18	24	1.83
1595147--1595178	13	2.5	13	94	0	55	15	31	28	25	1.96
1597482--1597519	12	3.5	11	82	10	51	60	5	0	34	1.19
1597482--1597525	23	2.0	22	90	4	70	59	4	0	36	1.18
1600299--1600337	6	6.5	6	91	8	62	2	15	64	17	1.41
1603131--1603175	20	2.3	20	81	7	58	33	0	0	66	0.92
1605002--1605048	18	2.5	19	82	6	51	21	6	2	70	1.20
1605529--1605577	24	2.2	21	86	13	64	38	4	8	48	1.52
1607777--1608347	88	6.4	89	77	6	507	46	15	19	18	1.84
1607777--1608370	179	3.4	176	79	3	604	46	15	19	18	1.84
1610068--1610113	22	2.2	20	84	7	56	41	19	8	30	1.82
1610250--1610574	21	14.9	20	74	12	209	39	15	8	37	1.77
1610317--1610642	21	14.6	23	72	20	130	39	13	8	37	1.76
1610317--1610732	46	9.4	46	80	8	415	39	13	8	37	1.77
1610317--1610732	92	4.7	92	83	7	458	39	13	8	37	1.77
1610559--1610682	38	3.1	38	72	17	113	38	12	8	39	1.75
1610643--1610727	25	3.6	25	78	16	90	37	14	9	38	1.78
1610559--1610732	84	2.1	84	88	0	258	38	12	9	39	1.75
1610664--1610736	21	3.3	21	75	14	74	39	12	8	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1612000--1612044	19	2.4	18	82	10	54	4	15	2	77	1.02
1612044--1612068	13	1.9	13	100	0	50	12	24	0	64	1.27
1612455--1612498	18	2.4	19	84	3	54	2	15	4	77	1.04
1615965--1616176	120	1.8	117	83	9	288	35	10	6	47	1.64
1616009--1616372	61	6.2	57	74	11	272	35	8	5	51	1.54
1615965--1616348	116	3.3	115	77	11	315	35	8	6	48	1.59
1616022--1616221	58	3.4	57	79	11	183	34	9	5	50	1.58
1616216--1616258	16	2.7	16	86	10	61	39	0	2	58	1.11
1616010--1616372	117	3.1	115	75	12	308	35	8	5	51	1.54
1616426--1616498	30	2.4	30	90	2	119	82	9	0	8	0.85
1616425--1616490	9	6.9	9	75	17	53	81	10	0	7	0.86
1617956--1617985	12	2.5	12	94	0	51	30	6	36	26	1.82
1618383--1618412	13	2.3	13	100	0	60	70	0	6	23	1.11
1618725--1618763	20	2.0	20	89	0	60	71	2	7	17	1.21
1618727--1618776	20	2.5	20	83	0	55	76	2	10	12	1.11
1618803--1618841	20	2.0	20	89	0	60	15	25	35	23	1.94
1619657--1619703	3	15.7	3	100	0	94	68	31	0	0	0.90
1619702--1619744	3	14.3	3	100	0	86	67	0	0	32	0.91
1621100--1621140	22	1.9	21	85	5	55	73	9	4	12	1.24
1624980--1625023	23	1.9	23	85	0	61	77	11	4	6	1.11
1626971--1627009	19	2.0	19	85	5	51	76	0	12	10	1.01
1638607--1638648	22	1.9	22	90	0	66	2	19	4	73	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1641423--1641468	19	2.4	20	85	10	69	8	0	10	80	0.91
1641426--1641493	31	2.2	31	83	0	82	11	1	10	76	1.09
1641570--1641629	26	2.4	24	77	20	61	45	1	10	43	1.47
1641913--1642065	49	3.1	50	75	9	143	50	8	13	26	1.70
1646103--1646177	8	9.6	8	83	8	93	77	0	12	10	1.00
1646087--1646162	23	3.2	24	83	9	86	75	0	14	10	1.06
1646084--1646177	31	3.0	29	77	13	98	75	0	13	10	1.04
1646103--1646177	15	4.8	16	82	9	93	77	0	12	10	1.00
1646103--1646162	23	2.6	23	92	5	95	75	0	13	11	1.06
1646104--1646161	7	7.7	7	83	11	62	74	0	13	12	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125