genome.fa.s46.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  70  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13848467--13848580	35	3.3	35	75	7	106	34	20	16	28	1.94
13848565--13848641	32	2.4	33	88	2	111	37	15	15	31	1.89
13848822--13848933	33	3.3	33	83	7	129	40	15	16	28	1.88
13848986--13849133	33	4.5	33	82	0	170	41	16	13	28	1.86
13849244--13849369	35	3.6	35	78	1	135	13	12	19	54	1.70
13849224--13849368	71	2.1	70	84	3	184	14	15	17	52	1.75
13852461--13852498	19	2.1	19	95	5	69	39	10	15	34	1.82
13852480--13852637	37	4.2	38	81	10	193	35	23	14	26	1.93
13852480--13852669	74	2.6	75	82	7	237	34	24	14	26	1.94
13852751--13853141	126	3.1	126	83	5	520	34	16	16	32	1.91
13859278--13859333	3	19.0	3	82	10	71	66	5	0	28	1.14
13859285--13859333	18	2.7	18	90	0	80	65	6	0	28	1.16
13862277--13862331	19	2.9	19	76	10	58	49	18	14	18	1.80
13867707--13867800	30	3.1	30	71	14	86	15	1	40	42	1.54
13867722--13867781	18	3.3	18	75	11	59	15	1	41	41	1.56
13867891--13867929	20	2.0	20	90	10	62	23	0	35	41	1.55
13867895--13867953	20	3.0	19	80	9	57	20	0	37	42	1.52
13867912--13867988	26	3.0	26	83	9	86	20	2	37	38	1.67
13868018--13868070	20	2.7	20	82	2	63	13	5	35	45	1.67
13868061--13868108	19	2.5	19	96	0	87	6	0	43	50	1.27
13869623--13870103	144	3.4	145	78	6	462	41	12	11	34	1.79
13869696--13870104	141	2.9	144	80	6	456	41	12	11	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13869905--13870210	143	2.1	142	82	7	352	39	13	13	33	1.84
13871184--13871217	12	2.8	12	86	13	52	79	8	5	5	1.05
13871629--13872012	50	7.6	50	77	6	265	32	9	16	40	1.81
13871629--13872002	100	3.7	100	80	2	372	33	10	16	39	1.83
13872496--13872561	20	3.3	20	72	21	66	46	16	10	25	1.79
13877016--13877068	17	3.0	17	80	5	52	3	15	3	77	1.06
13881611--13881660	20	2.5	20	90	3	73	36	28	12	24	1.91
13881624--13881661	20	1.9	20	100	0	76	34	31	7	26	1.85
13881665--13881751	20	4.4	20	80	13	108	43	39	1	16	1.55
13881680--13881758	7	11.9	7	69	24	55	44	40	1	13	1.52
13881681--13881745	12	5.1	12	74	18	60	44	40	1	13	1.54
13881914--13881958	19	2.3	19	84	3	54	44	35	6	13	1.70
13891450--13891517	19	3.6	19	73	23	63	26	7	0	66	1.18
13891890--13891922	15	2.1	16	88	5	50	63	0	15	21	1.30
13896156--13896180	10	2.5	10	100	0	50	60	0	8	32	1.26
13899998--13900046	10	4.8	10	82	5	53	46	16	10	26	1.78
13909857--13909894	19	2.1	19	85	5	51	60	5	7	26	1.46
13916406--13916470	12	5.4	12	85	7	62	10	10	0	78	0.97
13916402--13916469	18	3.8	18	82	7	77	10	10	0	79	0.94
13917953--13917994	17	2.5	17	82	17	52	23	4	4	66	1.30
13920805--13920845	21	2.0	21	85	0	55	82	7	7	2	0.91
13927689--13927720	15	2.1	16	94	5	57	90	9	0	0	0.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13927691--13927722	10	3.3	10	95	4	57	93	6	0	0	0.34
13930846--13931082	83	2.9	82	77	3	224	36	14	13	34	1.86
13931110--13931367	83	3.0	82	78	13	295	36	14	15	33	1.88
13931399--13931503	49	2.1	49	85	0	138	34	15	16	34	1.90
13931872--13931901	3	10.3	3	92	7	53	36	0	0	63	0.95
13935601--13935661	16	3.9	16	75	10	54	52	9	3	34	1.51
13936353--13936434	24	3.4	24	71	19	64	58	6	1	34	1.31
13941843--13941986	10	13.7	10	68	16	60	54	2	2	40	1.27
13942111--13942232	38	3.3	36	76	16	106	44	0	3	52	1.17
13946888--13946932	24	1.9	23	82	13	56	44	15	2	37	1.59
13946793--13947075	150	1.9	151	91	2	469	37	15	12	34	1.85
13960942--13960983	22	1.9	22	85	0	57	42	4	19	33	1.72
13962526--13962551	7	3.7	7	100	0	52	0	11	0	88	0.52
13970746--13970795	20	2.5	19	76	23	57	74	6	10	10	1.23
13978620--13978699	40	2.0	40	92	0	133	32	16	6	45	1.72
13979121--13979485	185	2.0	184	91	3	601	24	15	12	47	1.80
13980658--13980943	146	2.0	146	83	4	371	42	15	11	29	1.83
13981908--13982374	143	3.3	141	76	9	421	41	13	12	33	1.82
13983583--13983759	62	2.8	60	80	8	187	40	5	18	35	1.74
13983830--13983878	25	2.0	25	100	0	98	38	0	8	53	1.31
13983858--13983912	17	3.4	16	77	20	53	38	0	7	54	1.28
13984188--13984321	62	2.2	61	83	4	171	38	5	17	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13984625--13984675	21	2.6	20	82	11	61	58	1	0	39	1.09
13986959--13987002	20	2.1	20	83	8	52	54	18	2	25	1.55
13987321--13987469	64	2.3	64	87	0	199	36	18	7	38	1.79
13990140--13990177	20	2.0	20	89	5	60	50	0	0	50	1.00
13993835--13993867	11	3.3	10	88	12	50	0	9	0	90	0.44
13995740--13995777	19	2.0	20	89	5	60	0	21	7	71	1.11
13997778--13997803	2	13.0	2	100	0	52	50	0	0	50	1.00
13999684--14000053	96	3.8	96	85	9	521	17	4	41	36	1.70
13999815--13999987	57	3.1	57	67	18	166	16	4	42	36	1.69
13999813--14000026	108	2.0	108	93	0	365	17	4	42	35	1.70
13999980--14000056	33	2.3	33	81	0	82	18	5	42	33	1.72
14003257--14003303	18	2.5	19	79	6	51	27	4	2	65	1.22
14003723--14003772	23	2.2	23	82	3	57	58	4	8	30	1.45
14003796--14003865	24	3.2	21	69	17	54	55	2	2	38	1.29
14003857--14003903	21	2.2	22	88	11	71	55	2	4	38	1.31
14004184--14004222	20	2.0	19	90	5	60	51	20	7	20	1.72
14026214--14026346	30	4.5	29	77	5	115	51	2	4	41	1.34
14026250--14026346	29	3.3	28	80	8	104	53	0	4	42	1.20
14026215--14026346	59	2.2	60	85	4	169	52	2	4	40	1.34
14026961--14027009	17	2.8	18	78	9	57	77	0	14	8	0.98
14027663--14027701	10	3.9	10	80	12	53	2	28	0	69	1.02
14028091--14028123	13	2.6	13	90	4	50	39	3	0	57	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14028256--14028822	156	3.6	157	77	7	526	40	8	7	43	1.63
14029161--14029232	32	2.3	32	82	2	83	29	9	2	58	1.44
14034105--14034146	22	1.9	22	85	9	59	40	2	14	42	1.58
14034127--14034163	17	2.2	17	90	0	56	48	2	8	40	1.47
14039760--14039808	24	2.0	24	92	0	80	30	0	22	46	1.52
14045580--14045617	19	2.0	19	100	0	76	21	10	31	36	1.87
14051957--14051987	6	5.2	6	92	0	53	64	12	0	22	1.27
14052997--14053044	19	2.6	18	76	3	51	54	0	6	39	1.26
14055332--14055436	52	2.0	52	80	7	115	27	14	6	51	1.67
14061151--14061293	53	2.7	52	80	6	155	26	23	8	41	1.82
14061199--14061304	53	2.0	52	87	5	151	27	19	7	45	1.77
14067681--14067724	18	2.4	18	96	0	79	63	27	2	6	1.31
14069876--14069906	2	15.5	2	100	0	62	48	0	0	51	1.00
14070120--14070149	16	1.9	16	93	6	53	63	3	0	33	1.11
14070309--14070384	35	2.2	35	85	0	98	39	11	10	38	1.77
14071624--14071667	3	14.7	3	100	0	88	31	0	0	68	0.90
14075456--14075499	15	3.0	15	80	3	54	36	0	0	63	0.95
14075456--14075514	31	2.0	28	84	12	75	37	0	1	61	1.07
14075559--14075637	29	2.7	29	80	2	95	50	3	7	37	1.49
14079461--14079495	2	17.5	2	93	0	61	51	2	45	0	1.16
14079860--14079893	16	2.1	16	88	0	50	61	0	0	38	0.96
14080682--14080789	4	28.0	4	76	14	59	49	0	5	45	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14095935--14095980	22	2.1	22	95	0	83	23	23	8	43	1.82
14105584--14105652	23	3.0	23	81	12	70	39	27	14	18	1.90
14106194--14106239	24	1.9	24	82	8	58	30	10	6	52	1.62
14105990--14106395	151	2.8	146	78	11	361	32	12	13	41	1.82
14106942--14106974	17	2.0	17	88	5	50	27	6	21	45	1.75
14108487--14108521	18	1.9	18	88	0	52	40	0	8	51	1.33
14113025--14113589	130	4.4	130	83	4	660	50	9	20	18	1.74
14114384--14114619	83	2.8	83	88	1	321	39	21	9	29	1.85
14115671--14115714	23	2.0	22	86	4	61	45	20	4	29	1.71
14115922--14116038	48	2.4	48	85	4	146	32	14	17	35	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125