genome.fa.s46.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  35  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6794442--6794481	6	6.7	6	97	0	71	32	47	0	20	1.50
6794847--6794906	20	2.9	19	75	20	59	58	3	3	35	1.31
6802338--6802375	16	2.4	16	87	12	53	0	18	0	81	0.69
6802338--6802375	20	1.9	19	94	5	67	0	18	0	81	0.69
6803952--6804037	44	2.0	44	81	9	104	39	3	1	55	1.24
6813616--6813648	9	3.7	9	100	0	66	87	0	0	12	0.53
6813618--6813659	18	2.3	18	87	0	57	85	4	2	7	0.80
6813852--6813898	24	1.9	25	95	4	87	51	0	6	42	1.27
6813853--6813906	25	2.2	25	86	6	74	51	0	5	42	1.25
6818891--6818946	17	3.0	20	76	15	64	44	0	5	50	1.25
6828275--6828399	64	2.0	64	88	3	189	46	12	14	27	1.79
6829179--6829217	19	2.1	19	95	0	69	51	7	25	15	1.70
6834319--6834344	6	4.3	6	100	0	52	0	15	69	15	1.20
6834745--6834773	2	14.5	2	100	0	58	51	0	0	48	1.00
6837669--6837710	21	2.0	21	100	0	84	33	19	19	28	1.96
6840440--6840474	3	11.7	3	88	11	54	62	0	2	34	1.10
6842348--6842392	17	2.7	17	86	3	56	35	2	0	62	1.08
6844148--6844234	43	2.0	42	88	2	129	36	9	33	20	1.85
6844042--6844533	245	2.0	245	98	0	957	34	10	26	29	1.89
6844393--6844480	43	2.0	43	88	0	131	36	9	34	20	1.84
6847909--6847970	28	2.2	28	88	0	97	33	8	3	54	1.46
6851446--6851487	20	2.0	21	90	4	68	73	0	0	26	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6852104--6852128	2	12.5	2	100	0	50	48	0	0	52	1.00
6880608--6880634	2	13.5	2	100	0	54	51	0	48	0	1.00
6882576--6882614	21	1.9	20	89	5	60	43	0	46	10	1.37
6902293--6902337	21	2.1	21	91	0	72	22	11	22	44	1.84
6906499--6906878	183	2.1	181	91	4	604	23	18	19	38	1.93
6923947--6924028	42	1.9	43	92	2	139	24	9	24	41	1.85
6924502--6924539	2	19.0	2	100	0	76	50	0	0	50	1.00
6926489--6926521	15	2.2	15	100	0	66	33	6	39	21	1.78
6946661--6946939	136	2.1	136	97	1	526	46	3	5	45	1.41
6947654--6947694	2	21.5	2	90	9	68	51	0	0	48	1.00
6947879--6947923	22	2.0	23	91	4	74	46	6	8	37	1.61
6949937--6949985	25	2.1	21	76	20	53	59	0	0	40	0.98
6961557--6961619	32	1.9	32	83	6	81	52	1	0	46	1.10
6966156--6966212	28	2.0	28	93	0	96	52	19	21	7	1.69
6966910--6966934	2	12.5	2	100	0	50	0	48	0	52	1.00
6994346--6994407	31	2.0	31	93	0	106	51	9	14	24	1.72
6997799--6997828	16	1.9	15	93	6	51	80	0	3	16	0.85
6999588--6999640	26	2.0	26	96	0	97	33	26	13	26	1.93
7001595--7001633	2	19.5	2	89	0	60	43	0	5	51	1.24
7005785--7005814	14	2.1	15	93	6	53	46	0	3	50	1.18
7006642--7006691	11	4.5	11	82	0	64	22	6	4	68	1.29
7006631--7006681	22	2.3	23	80	10	61	29	3	1	64	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7006642--7006693	22	2.4	22	93	0	86	21	5	5	67	1.33
7006720--7006778	11	5.7	10	78	18	50	30	0	1	67	1.00
7007002--7007037	19	1.9	19	88	5	56	30	2	5	61	1.33
7009442--7009496	27	2.0	27	100	0	110	25	18	20	36	1.94
7009982--7010039	30	1.9	30	89	0	89	27	17	8	46	1.77
7009983--7010043	14	4.2	14	75	8	59	26	16	8	49	1.73
7011742--7011767	2	13.0	2	100	0	52	50	0	0	50	1.00
7020045--7020295	126	2.0	126	96	0	466	19	27	15	36	1.93
7025346--7025391	18	2.6	18	96	0	83	43	13	0	43	1.43
7029377--7029410	2	17.0	2	93	0	50	55	0	0	44	0.99
7030823--7030878	26	2.2	26	81	9	62	44	8	8	37	1.67
7032698--7032722	2	12.5	2	100	0	50	52	0	0	48	1.00
7032911--7032972	32	2.0	31	84	9	81	43	1	1	53	1.20
7036209--7036282	36	2.1	35	90	7	114	60	8	4	27	1.43
7036696--7036801	30	3.6	29	74	6	97	37	6	7	48	1.58
7039942--7039980	6	6.5	6	96	0	60	23	10	51	15	1.73
7041617--7041661	18	2.5	18	82	10	56	15	15	0	68	1.21
7052254--7052306	26	2.0	26	100	0	106	49	18	11	20	1.78
7057360--7057406	25	1.9	25	82	4	60	53	0	6	40	1.27
7057453--7057483	8	3.8	8	95	4	53	29	0	0	70	0.87
7057962--7057989	2	14.0	2	100	0	56	50	0	0	50	1.00
7061511--7061566	24	2.5	22	80	14	60	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7063800--7063834	16	2.2	16	95	5	63	60	0	0	40	0.97
7063867--7064229	185	2.0	176	94	4	627	46	6	9	36	1.63
7064290--7064349	25	2.5	25	77	17	65	56	1	0	41	1.09
7064378--7064408	11	2.8	11	95	0	53	41	9	0	48	1.36
7064373--7064422	22	2.3	22	85	0	64	40	10	4	46	1.56
7065235--7065301	32	2.1	32	100	0	134	61	14	8	14	1.56
7066605--7066645	13	3.2	13	82	0	55	39	0	0	60	0.96
7066598--7066679	33	2.5	32	75	7	85	41	0	1	57	1.06
7069863--7069891	2	14.5	2	100	0	58	51	0	48	0	1.00
7075293--7075327	15	2.2	16	90	5	54	65	2	0	31	1.07
7075323--7075378	6	10.0	6	74	14	57	64	0	0	35	0.94
7075311--7075377	21	3.6	18	73	15	55	65	0	0	34	0.93
7075323--7075376	11	4.9	11	84	6	65	64	0	0	35	0.94
7075323--7075378	21	2.5	23	80	8	71	64	0	0	35	0.94
7075576--7075641	33	2.0	33	85	5	89	56	1	1	40	1.18
7077104--7077156	20	2.5	22	80	20	67	54	0	0	45	0.99
7077122--7077173	25	2.0	26	81	11	61	59	0	0	40	0.97
7078080--7078119	11	3.4	11	86	13	53	35	0	0	65	0.93
7082959--7083007	18	2.7	19	78	9	57	4	36	2	57	1.30
7088965--7089009	12	3.7	13	82	11	51	75	2	8	13	1.13
7090344--7090393	21	2.4	22	83	6	59	54	16	8	22	1.68
7096459--7096506	17	2.7	17	87	9	69	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7097913--7097969	29	2.0	29	86	10	82	21	10	15	52	1.72
7101324--7101375	2	26.0	2	88	0	77	55	0	0	44	0.99
7106819--7107069	124	2.0	120	90	6	389	48	5	3	42	1.44
7108378--7108421	10	4.7	9	81	18	54	65	0	0	34	0.93
7108379--7108421	20	2.3	19	92	8	70	67	0	0	32	0.91
7108481--7108515	13	2.7	13	86	0	52	48	0	0	51	1.00
7112692--7112716	13	1.9	13	100	0	50	24	0	0	76	0.80
7119902--7119948	21	2.2	21	88	7	69	53	0	0	46	1.00
7120974--7121006	14	2.4	14	94	0	57	57	0	0	42	0.98
7122139--7122173	18	1.9	19	88	11	56	11	11	2	74	1.18
7131790--7131825	18	2.0	18	100	0	72	22	16	11	50	1.77
7141233--7141260	2	14.0	2	100	0	56	0	50	0	50	1.00
7144838--7144887	21	2.4	22	77	12	61	38	0	0	62	0.96
7145432--7145473	22	1.9	22	85	0	57	61	4	2	30	1.29
7147913--7148135	111	2.0	111	100	0	446	27	16	20	35	1.94
7158154--7158191	2	19.0	2	100	0	76	0	50	0	50	1.00
7161803--7161841	21	1.9	21	89	5	62	46	0	0	53	1.00
7162387--7162428	22	1.9	22	85	0	57	61	4	2	30	1.29
7163624--7163678	14	3.7	15	73	9	51	38	0	0	61	0.96
7163624--7163657	8	4.4	8	92	3	52	32	0	0	67	0.91
7163644--7163695	21	2.5	21	88	11	81	46	0	0	53	1.00
7163642--7163694	22	2.4	22	93	6	90	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7169923--7169957	2	18.0	2	94	5	63	51	0	0	48	1.00
7169926--7169955	15	2.0	15	100	0	60	53	0	0	46	1.00
7169924--7169957	17	2.0	17	100	0	68	52	0	0	47	1.00
7171389--7171427	20	2.0	20	89	0	60	43	5	0	51	1.24
7172053--7172458	59	6.7	59	81	8	453	33	13	7	45	1.72
7172587--7172626	17	2.3	18	86	4	55	82	7	0	10	0.84
7172875--7172914	20	2.1	20	86	9	57	0	42	0	57	0.98
7173472--7173519	18	2.6	19	83	12	64	62	8	8	20	1.49
7173576--7173737	12	13.8	12	67	18	58	70	4	0	24	1.11
7173604--7173654	23	2.3	23	83	16	63	70	3	0	25	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125