genome.fa.s46.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  48  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9635079--9635138	23	2.6	24	75	17	63	76	3	0	20	0.92
9635114--9635147	9	3.7	9	88	4	50	76	0	0	23	0.79
9635113--9635148	10	3.7	10	85	7	56	77	0	0	22	0.76
9635112--9635152	11	4.0	11	81	18	61	73	0	0	26	0.84
9635108--9635149	19	2.2	19	91	0	66	80	0	0	19	0.70
9635114--9635151	19	2.0	19	100	0	76	73	0	0	26	0.83
9635694--9635732	14	2.9	14	80	3	53	17	2	2	76	1.01
9636070--9636186	36	3.2	36	78	11	114	13	2	8	75	1.14
9636085--9636153	12	6.1	11	77	17	70	10	1	10	78	1.04
9636510--9636900	174	2.2	175	88	1	597	47	11	17	23	1.80
9636774--9637223	102	4.3	104	86	3	554	49	11	17	22	1.78
9636952--9637209	34	7.6	34	72	7	148	50	10	16	22	1.75
9637196--9637810	109	5.6	109	84	0	755	46	14	19	19	1.83
9637202--9637811	218	2.8	218	88	0	862	46	14	19	19	1.83
9637196--9637799	327	1.8	327	87	0	904	46	14	19	19	1.84
9638841--9638865	9	2.8	9	100	0	50	8	0	0	92	0.40
9647585--9647617	15	2.4	14	90	10	50	87	3	6	3	0.71
9651854--9652262	59	6.8	59	85	9	533	34	13	7	44	1.72
9651854--9652262	125	3.4	118	85	9	535	34	13	7	44	1.72
9652347--9652405	19	3.5	17	76	14	52	81	3	6	8	0.97
9652458--9652488	13	2.4	13	100	0	62	6	19	64	9	1.45
9652492--9652524	5	6.6	5	92	0	57	0	36	42	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9652739--9652784	20	2.3	20	92	3	76	23	21	28	26	1.99
9653415--9653479	16	4.3	15	74	18	55	63	6	0	30	1.19
9653654--9653730	1	77.0	1	78	0	82	0	0	10	89	0.48
9653646--9653730	9	9.9	8	91	7	107	0	0	11	88	0.52
9653646--9653730	18	4.8	18	91	7	138	0	0	11	88	0.52
9653646--9653730	36	2.4	36	96	2	154	0	0	11	88	0.52
9653737--9654311	42	14.0	41	87	8	805	37	21	18	23	1.94
9653737--9654311	165	3.5	162	91	5	874	37	21	18	23	1.94
9655491--9655559	8	9.1	8	81	15	76	7	13	0	79	0.92
9655518--9655578	13	4.5	13	78	10	59	6	16	0	77	0.98
9655507--9655580	29	2.5	29	76	8	78	8	16	0	75	1.02
9659394--9659742	59	5.8	60	84	11	450	34	13	7	44	1.72
9659824--9659887	19	3.8	17	76	13	60	81	4	6	7	0.99
9660208--9660253	20	2.3	20	92	3	76	23	21	28	26	1.99
9660305--9660376	31	2.3	31	90	4	110	26	23	26	23	2.00
9660886--9660950	16	4.3	15	74	18	55	63	6	0	30	1.19
9662457--9662497	14	2.6	16	77	18	50	39	4	0	56	1.21
9670725--9670776	4	12.8	4	83	4	68	26	1	19	51	1.57
9675991--9676095	52	2.0	52	81	3	122	28	21	7	41	1.81
9677279--9677334	26	2.1	27	83	6	69	39	5	0	55	1.23
9686988--9687012	12	2.1	12	100	0	50	84	0	8	8	0.79
9698930--9698976	16	2.9	16	78	9	51	38	0	4	57	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9701436--9701467	13	2.3	15	89	10	50	78	3	15	3	1.01
9702515--9702636	63	1.9	64	88	1	183	43	4	12	40	1.61
9702518--9702650	63	2.1	64	81	2	151	45	3	12	37	1.60
9705898--9706020	64	1.9	64	89	0	192	43	4	12	39	1.61
9711441--9712135	353	2.0	346	92	3	1151	41	12	16	29	1.85
9712550--9712597	21	2.2	21	88	3	69	37	0	6	56	1.25
9714238--9714303	34	2.0	34	85	5	91	10	16	7	65	1.46
9718056--9718103	27	1.9	24	87	12	62	47	4	0	47	1.21
9719889--9719943	20	2.7	20	75	13	58	25	5	0	69	1.10
9721448--9721646	43	4.6	42	75	7	184	44	15	13	26	1.83
9721448--9721645	87	2.3	84	83	6	245	44	15	13	26	1.83
9721991--9722033	21	2.0	21	95	0	77	34	16	13	34	1.88
9722397--9722542	22	6.9	21	84	8	181	37	17	9	35	1.82
9722397--9722542	43	3.4	43	88	4	208	37	17	9	35	1.82
9722603--9722663	20	3.0	21	76	7	54	59	0	1	39	1.08
9723705--9723748	11	3.9	11	80	14	54	27	0	2	70	0.99
9723704--9723731	12	2.3	12	100	0	56	21	0	0	78	0.75
9724101--9724189	16	5.9	16	75	10	89	49	29	2	19	1.60
9724140--9724198	16	3.6	16	76	15	50	49	25	5	20	1.69
9729970--9730032	1	63.0	1	77	0	63	88	11	0	0	0.50
9729977--9730025	25	2.0	25	100	0	98	89	10	0	0	0.48
9729961--9730034	33	2.3	32	85	2	112	85	9	2	2	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9729970--9730027	8	7.2	8	90	5	91	89	10	0	0	0.48
9731328--9731372	23	1.9	24	90	4	74	64	8	4	22	1.40
9731724--9731823	41	2.4	41	85	6	123	35	16	11	38	1.83
9732020--9732044	8	3.1	8	100	0	50	40	0	0	60	0.97
9731897--9732148	131	1.9	131	95	0	459	30	15	15	38	1.88
9732336--9732395	22	2.7	22	92	0	93	26	26	20	26	1.99
9732218--9732526	131	2.4	131	90	1	460	24	22	19	33	1.97
9732467--9732592	22	5.7	22	76	7	130	25	21	22	30	1.98
9732577--9732768	87	2.2	87	92	1	314	24	18	19	37	1.94
9732743--9732791	23	2.1	23	100	0	98	28	24	20	26	1.99
9732886--9733149	38	7.2	38	66	15	160	19	22	14	43	1.87
9732831--9735050	348	6.3	352	86	4	2412	19	24	14	40	1.89
9733609--9733721	35	3.1	34	73	12	109	18	23	17	40	1.91
9732904--9735063	627	3.4	625	88	4	2768	19	24	14	40	1.90
9734665--9734772	35	3.1	33	69	7	90	16	23	17	42	1.88
9732831--9735068	279	8.0	277	81	7	2024	19	24	14	40	1.89
9735528--9735615	25	3.6	24	72	4	77	23	34	12	29	1.92
9736081--9736118	2	19.0	2	100	0	76	0	50	0	50	1.00
9736812--9736900	16	5.9	16	73	10	80	47	33	2	16	1.60
9736812--9736904	32	3.0	32	84	6	104	46	34	2	17	1.60
9738903--9739018	7	15.0	8	79	16	97	11	10	0	78	0.97
9738933--9739019	25	3.2	26	79	20	72	10	8	0	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9743943--9743967	2	12.5	2	100	0	50	48	0	0	52	1.00
9744862--9744922	19	3.2	17	78	21	52	37	0	1	60	1.07
9746124--9746168	2	22.5	2	86	0	63	48	2	2	46	1.26
9748006--9748050	23	2.0	23	82	8	56	57	6	0	35	1.25
9747890--9748708	269	3.0	268	89	3	1187	43	8	5	41	1.59
9749445--9749520	32	2.4	32	82	8	93	31	9	15	43	1.79
9751571--9751614	15	3.0	14	83	9	61	36	2	0	61	1.09
9751568--9751649	30	2.7	31	78	12	98	39	2	2	56	1.26
9753566--9753604	7	5.4	7	84	3	51	53	0	2	43	1.14
9754504--9754544	20	2.1	19	86	4	55	46	2	0	51	1.14
9755647--9755916	61	4.4	60	82	4	310	34	12	6	46	1.68
9755647--9755915	122	2.2	121	87	3	373	34	12	6	46	1.67
9758062--9758131	34	2.1	34	83	5	88	50	14	12	22	1.77
9758096--9758366	85	3.2	86	84	2	359	48	14	16	21	1.81
9758558--9758710	34	4.5	34	71	9	96	39	9	15	35	1.79
9758592--9758705	17	6.7	17	73	9	65	40	7	15	35	1.77
9758558--9758710	68	2.2	70	78	9	172	39	9	15	35	1.79
9758785--9758826	17	2.5	17	88	0	66	45	14	16	23	1.84
9764145--9764432	59	4.8	60	86	3	377	33	13	6	46	1.69
9764112--9764470	59	6.1	58	81	8	347	34	12	6	45	1.69
9764550--9764585	18	1.9	19	88	5	56	66	11	13	8	1.44
9772522--9772546	13	1.9	13	100	0	50	8	0	4	88	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9780674--9780711	19	2.0	20	84	5	51	2	18	2	76	1.02
9784740--9784766	14	1.9	14	100	0	54	37	7	0	55	1.28
9786781--9786820	22	1.9	20	90	10	62	72	2	5	20	1.15
9787359--9787406	2	24.5	2	85	4	62	50	2	2	45	1.25
9788570--9788602	2	16.5	2	93	0	57	45	0	51	3	1.16
9788909--9788933	2	12.5	2	100	0	50	52	0	0	48	1.00
9790253--9790298	23	2.0	24	82	4	58	58	8	0	32	1.28
9789870--9790688	270	3.0	269	88	2	1142	43	8	6	41	1.59
9790868--9790960	37	2.5	37	98	0	177	35	3	5	55	1.39
9791461--9791536	32	2.4	32	82	8	93	31	9	15	43	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125