genome.fa.s46.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  93  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18158250--18158284	18	1.9	18	88	0	52	51	2	0	45	1.16
18158966--18159004	18	2.2	18	90	0	60	20	23	2	53	1.57
18158989--18159216	118	1.9	117	88	2	341	36	7	7	48	1.61
18159799--18159843	21	2.0	21	83	8	54	33	0	2	64	1.06
18172270--18172303	17	1.9	18	94	5	61	44	0	0	55	0.99
18172802--18172846	23	2.0	23	86	8	65	73	4	2	20	1.11
18173317--18173362	20	2.3	20	96	0	83	30	8	28	32	1.87
18173998--18174043	21	2.3	20	85	7	58	65	2	6	26	1.28
18177195--18177240	23	1.9	25	83	16	62	43	0	4	52	1.21
18184554--18184587	17	1.9	18	94	5	61	44	0	0	55	0.99
18193119--18193234	57	2.1	58	82	11	143	47	5	0	46	1.30
18193418--18193552	57	2.4	55	80	8	150	44	8	4	42	1.54
18193492--18193535	23	1.9	23	81	9	54	52	9	4	34	1.54
18193743--18193780	16	2.4	16	90	0	58	31	10	7	50	1.66
18198090--18198126	19	1.9	19	94	0	65	29	27	8	35	1.85
18204006--18204039	15	2.4	14	90	9	52	50	11	20	17	1.77
18212833--18212879	23	2.0	24	95	4	87	63	4	2	29	1.25
18213803--18214165	184	2.0	185	83	5	459	32	7	17	41	1.78
18215033--18215075	17	2.5	17	76	0	50	20	4	0	74	1.00
18217849--18217880	16	2.0	16	93	0	55	50	9	0	40	1.35
18218726--18218769	2	22.0	2	95	0	79	52	0	47	0	1.00
18218848--18218892	20	2.2	21	84	4	56	4	15	0	80	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18218919--18218952	14	2.3	15	90	5	52	26	2	2	67	1.19
18218931--18218974	19	2.4	18	88	3	61	27	4	4	63	1.33
18219149--18219181	8	4.1	8	92	0	57	84	3	0	12	0.72
18227438--18227504	21	3.0	21	78	16	73	49	1	1	47	1.19
18227438--18227504	24	2.9	23	82	10	84	49	1	1	47	1.19
18227520--18227575	19	2.8	21	84	10	73	60	1	1	35	1.17
18242813--18242840	3	9.3	3	100	0	56	67	0	0	32	0.91
18244615--18244663	20	2.5	20	89	0	80	48	4	12	34	1.59
18244669--18244709	21	2.0	21	85	0	55	26	9	0	63	1.25
18246378--18246413	18	2.0	18	88	0	54	52	8	0	38	1.32
18246392--18246434	21	2.0	21	81	0	50	62	6	2	27	1.33
18246719--18246761	20	2.2	20	95	0	77	44	6	4	44	1.52
18247134--18247213	20	4.0	20	75	3	72	26	3	5	65	1.30
18247175--18247221	21	2.2	22	85	7	71	27	2	6	63	1.30
18247144--18247263	52	2.3	52	82	10	149	30	4	5	60	1.36
18247177--18247231	20	2.8	19	84	13	67	30	1	7	60	1.35
18247186--18247274	31	2.8	31	78	11	83	31	3	6	58	1.41
18247263--18247391	10	13.4	9	68	18	55	30	3	7	58	1.41
18247263--18247314	20	2.7	20	80	11	63	34	1	9	53	1.45
18247331--18247371	18	2.3	18	86	0	55	26	2	7	63	1.33
18247280--18247371	38	2.4	38	78	1	96	28	2	7	61	1.35
18247359--18247400	20	2.2	19	86	4	57	33	7	2	57	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18248227--18248312	29	2.8	30	77	8	75	47	3	3	45	1.36
18249274--18249407	19	7.2	19	72	13	66	16	2	33	47	1.59
18249359--18249692	7	49.6	7	70	17	149	20	0	35	42	1.59
18249346--18249451	32	3.3	32	79	10	119	18	0	35	44	1.57
18249384--18249430	19	2.4	20	82	3	60	23	0	34	42	1.54
18249351--18249617	39	6.7	39	71	15	140	21	1	34	42	1.60
18249384--18249446	20	3.2	19	76	13	56	22	0	34	42	1.54
18249341--18249479	64	2.2	65	78	12	146	19	1	34	44	1.60
18251856--18251900	19	2.3	21	85	11	60	17	6	4	71	1.25
18252837--18252866	3	10.0	3	100	0	60	33	0	0	66	0.92
18254878--18254981	3	34.7	3	88	0	145	67	26	0	4	1.17
18254980--18255023	3	14.7	3	100	0	88	68	0	0	31	0.90
18255341--18255524	43	4.4	43	78	6	189	42	9	13	34	1.75
18255419--18255537	43	2.8	43	89	0	175	43	11	12	31	1.79
18255844--18255940	36	2.7	36	83	3	124	44	17	12	25	1.84
18255923--18256037	34	3.3	33	70	11	88	37	16	18	27	1.92
18255897--18256030	69	1.9	69	84	3	180	38	17	15	28	1.91
18256337--18256424	33	2.7	33	85	0	113	36	11	14	37	1.83
18261816--18262208	194	2.0	194	94	0	687	31	19	15	34	1.92
18270572--18270599	3	9.3	3	100	0	56	32	0	0	67	0.91
18270974--18271012	20	1.9	21	84	5	53	15	5	5	74	1.17
18271003--18271031	14	2.1	14	93	6	51	20	6	0	72	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18271168--18271214	21	2.2	21	81	7	51	42	2	2	53	1.25
18273260--18273362	32	3.2	32	79	9	104	18	5	7	67	1.35
18273305--18273388	18	4.5	19	75	20	63	17	3	7	71	1.23
18280776--18280807	9	3.4	9	95	4	55	53	3	0	43	1.16
18281820--18281854	3	11.7	3	87	0	52	31	2	0	65	1.07
18283995--18284379	214	1.8	211	80	8	453	35	10	6	47	1.64
18285088--18285123	17	2.1	17	89	0	54	2	0	13	83	0.76
18285297--18285345	23	2.1	23	96	0	89	28	14	12	44	1.81
18285546--18285582	3	12.3	3	100	0	74	67	0	0	32	0.91
18285749--18286122	47	7.8	48	82	7	391	39	17	13	30	1.88
18285749--18286122	144	2.6	144	85	4	475	39	17	13	30	1.88
18295145--18295209	21	3.1	21	95	0	121	30	9	35	24	1.87
18299094--18299156	21	3.1	19	77	20	65	77	1	15	4	1.01
18299894--18299932	20	2.0	19	85	5	51	35	2	0	61	1.10
18301677--18301708	3	10.7	3	100	0	64	31	0	0	68	0.90
18304214--18304244	2	15.0	2	93	6	53	48	0	3	48	1.17
18306285--18306429	73	2.0	73	85	5	195	25	12	22	40	1.89
18309400--18309488	18	4.9	18	73	10	56	21	2	8	67	1.29
18309447--18309500	20	2.6	21	88	5	74	22	0	5	72	1.05
18309399--18309497	49	2.1	46	83	7	119	22	2	8	67	1.27
18310565--18310621	26	2.3	25	81	6	71	26	0	3	70	1.03
18311419--18311463	17	2.8	16	83	12	56	26	2	2	68	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18313824--18313920	27	3.6	25	76	12	77	20	6	24	48	1.72
18313812--18313920	13	8.4	13	79	8	91	21	6	24	47	1.74
18313902--18313939	19	2.0	20	89	5	60	15	0	31	52	1.43
18314211--18314248	3	12.7	3	100	0	76	31	0	0	68	0.90
18320189--18320237	18	2.5	21	77	9	59	4	6	10	79	1.03
18320189--18320253	23	3.2	22	76	20	61	4	4	12	78	1.06
18320382--18320563	35	5.1	34	67	14	102	52	12	16	19	1.74
18320780--18320862	36	2.3	36	89	2	123	54	20	13	12	1.70
18321051--18321151	38	2.7	38	79	1	114	52	16	16	13	1.75
18321051--18321192	74	1.9	75	84	4	189	52	14	17	15	1.76
18321274--18321365	32	2.8	32	86	1	130	36	11	17	33	1.86
18321564--18321882	33	9.6	33	69	15	111	31	13	20	35	1.91
18321766--18321899	33	4.1	33	78	6	112	34	10	17	37	1.85
18322143--18322219	32	2.4	32	84	4	102	28	15	19	36	1.92
18322180--18322297	54	2.2	54	85	0	155	24	16	24	34	1.95
18322311--18322401	32	2.8	32	89	0	137	28	16	20	34	1.95
18322487--18322535	7	7.0	7	83	0	62	18	2	2	77	0.96
18322481--18322545	12	5.4	12	72	18	55	18	3	1	76	0.99
18322482--18322573	21	4.7	21	73	17	65	20	2	2	75	1.02
18322528--18322681	3	47.7	3	70	20	50	27	5	1	64	1.27
18322481--18322576	35	2.7	35	85	9	115	20	3	2	73	1.07
18322584--18322637	20	2.7	20	91	0	81	31	7	1	59	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18323438--18323489	4	14.0	4	80	15	51	26	0	0	73	0.84
18323431--18323574	13	10.9	13	68	25	65	23	0	2	72	1.02
18323434--18323559	19	6.8	19	74	16	88	24	0	2	72	1.02
18323509--18323575	5	13.4	5	77	17	68	17	1	1	79	0.89
18323431--18323570	14	10.7	13	67	23	62	23	0	2	72	1.02
18323428--18323570	19	7.4	18	69	21	69	23	0	2	73	1.01
18323587--18323871	58	4.8	57	81	11	317	40	7	14	38	1.74
18326981--18327011	15	2.1	15	93	0	53	19	29	6	45	1.75
18335243--18335543	41	7.1	41	84	6	254	25	15	21	37	1.93
18335250--18335543	46	6.9	42	84	8	239	25	15	20	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125