genome.fa.s46.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  34  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6638738--6638818	22	3.9	19	74	21	65	79	2	4	13	1.01
6638853--6638898	4	11.8	4	77	13	51	78	0	0	21	0.76
6638852--6638887	7	5.4	7	87	12	58	75	0	0	25	0.81
6639943--6640011	13	5.7	11	79	17	66	76	1	1	20	0.94
6639890--6640010	46	2.7	46	82	7	133	74	1	2	21	1.02
6639943--6640010	6	11.2	6	75	20	61	77	1	1	19	0.92
6640212--6640356	42	3.4	43	89	4	224	37	22	17	23	1.94
6640334--6640383	25	2.0	25	92	0	82	34	28	16	22	1.95
6640359--6640532	41	4.2	41	93	0	285	35	22	16	24	1.95
6641530--6641618	15	5.8	16	76	17	75	12	11	0	76	1.02
6641530--6641618	8	11.6	8	80	13	75	12	11	0	76	1.02
6643044--6643082	20	2.0	20	94	0	69	17	17	7	56	1.64
6646963--6646994	15	2.1	16	94	5	57	56	6	18	18	1.62
6650086--6650119	6	5.7	6	100	0	68	70	14	0	14	1.17
6650221--6650263	16	2.6	16	88	7	59	39	0	13	46	1.44
6650202--6650819	58	10.5	58	83	9	726	34	12	7	44	1.72
6650448--6650563	53	2.2	53	84	4	144	33	14	6	44	1.72
6651996--6652071	6	12.2	6	77	18	68	78	1	0	19	0.81
6651943--6652069	38	3.5	37	78	13	122	74	1	2	22	1.02
6651996--6652072	13	6.2	13	75	22	60	77	1	0	20	0.83
6665478--6665585	45	2.4	45	79	0	108	26	35	18	19	1.95
6680557--6681050	45	11.0	45	72	3	285	21	33	23	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6680555--6680894	135	2.5	135	80	4	393	20	33	24	22	1.97
6682432--6682469	14	2.7	14	91	0	67	23	21	42	13	1.88
6692055--6692097	15	2.8	16	75	7	52	53	0	0	46	1.00
6693612--6693657	24	2.0	24	86	4	67	19	8	0	71	1.11
6695494--6697359	181	10.5	180	73	8	1192	42	9	7	40	1.65
6695414--6696533	534	2.1	537	78	4	1129	43	9	7	40	1.64
6695535--6697270	177	9.8	176	72	11	548	42	9	7	41	1.64
6696470--6696767	163	1.8	163	82	1	382	42	10	9	37	1.72
6696647--6697396	184	4.2	180	76	8	614	43	8	6	41	1.61
6697553--6698495	359	2.6	358	77	7	799	42	8	7	40	1.64
6697524--6698305	181	4.3	181	76	9	496	42	9	7	41	1.65
6698961--6699042	6	13.2	6	80	14	87	19	1	1	78	0.89
6698961--6699027	25	2.6	26	88	6	93	17	1	1	79	0.89
6698967--6699087	38	3.1	39	81	9	122	20	2	1	75	1.01
6699179--6699271	23	4.3	20	76	20	73	18	6	6	68	1.33
6699161--6699271	44	2.5	43	80	8	100	20	6	7	65	1.39
6700092--6700138	4	11.8	4	86	0	67	19	0	4	76	0.95
6700162--6700220	11	5.5	11	82	9	61	15	5	1	77	1.01
6700162--6700255	5	18.4	5	73	18	70	14	5	3	76	1.09
6700093--6700235	12	12.0	12	70	14	73	18	2	4	74	1.10
6700169--6700270	42	2.4	41	81	14	102	15	5	2	75	1.12
6700375--6700407	16	2.0	17	88	5	50	51	9	0	39	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6700270--6700437	59	2.9	57	85	6	230	44	6	13	36	1.69
6703065--6703099	16	2.1	16	89	10	52	31	0	0	68	0.90
6703465--6703497	16	2.1	16	88	5	50	81	0	0	18	0.68
6704479--6704529	22	2.3	22	82	0	57	45	0	7	47	1.32
6704513--6704567	14	4.1	13	79	11	58	65	3	0	30	1.10
6704513--6704570	7	8.4	7	73	17	50	63	3	0	32	1.11
6704513--6704569	21	2.8	20	86	10	80	64	3	0	31	1.10
6704906--6704955	21	2.3	21	86	3	64	22	14	2	62	1.42
6708839--6708868	3	10.0	3	100	0	60	66	0	0	33	0.92
6709011--6709067	30	1.9	30	92	0	96	38	8	0	52	1.33
6710531--6710584	26	2.1	26	82	0	63	55	12	7	24	1.63
6714018--6714049	16	2.0	16	100	0	64	37	0	18	43	1.51
6714103--6714156	27	2.0	27	85	10	74	35	5	14	44	1.69
6716495--6716533	21	1.9	21	89	5	62	56	0	7	35	1.28
6716495--6716535	20	2.0	20	86	9	57	56	0	7	36	1.27
6719928--6719991	22	3.1	21	80	13	71	35	0	1	62	1.05
6720927--6721010	41	2.0	41	81	0	96	47	4	4	42	1.45
6720180--6721056	433	2.0	433	93	1	1485	39	6	8	45	1.61
6721421--6721453	16	2.0	17	94	5	59	36	12	6	45	1.66
6726175--6726510	167	2.0	168	92	1	559	31	15	19	33	1.93
6727047--6727077	15	2.1	15	93	0	53	35	19	9	35	1.85
6729031--6729074	21	2.1	21	83	8	54	45	15	4	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6732145--6732173	12	2.4	12	100	0	58	10	24	27	37	1.88
6736236--6736289	17	2.9	18	81	8	65	64	12	1	20	1.36
6736250--6736312	29	2.1	30	85	8	85	66	11	3	19	1.36
6736606--6736795	43	4.4	43	75	6	170	45	15	12	26	1.81
6736606--6736795	86	2.2	86	85	1	256	45	15	12	26	1.81
6737013--6737104	17	5.2	17	70	7	58	36	18	14	30	1.90
6737057--6737158	35	2.9	35	74	0	96	32	19	17	30	1.95
6737152--6737186	18	1.9	18	88	0	52	42	8	8	40	1.66
6737207--6737240	17	2.0	17	94	0	59	38	17	5	38	1.74
6737212--6737284	17	4.3	17	75	6	67	32	15	17	34	1.91
6737226--6737317	34	2.7	34	81	1	96	35	17	18	28	1.93
6737345--6737418	34	2.2	34	82	4	87	40	12	10	36	1.78
6737723--6737765	22	1.9	22	85	4	59	51	11	6	30	1.65
6737697--6737765	23	3.1	22	73	6	68	46	14	5	33	1.68
6737750--6737780	15	2.1	15	93	0	53	51	9	6	32	1.60
6745445--6745471	2	13.5	2	100	0	54	51	0	0	48	1.00
6747498--6747528	16	1.9	16	93	0	53	32	16	9	41	1.80
6750098--6750131	11	3.0	11	91	4	50	76	0	2	20	0.92
6751949--6751983	18	1.9	18	88	0	52	65	8	5	20	1.40
6751921--6751983	29	2.1	30	88	8	94	65	9	4	20	1.41
6758254--6758323	35	2.0	35	88	0	104	34	11	17	37	1.85
6761520--6761594	25	3.0	25	84	3	107	45	26	5	22	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6761552--6761591	12	3.2	12	79	6	53	42	25	7	25	1.80
6762294--6763573	187	6.9	185	81	5	1220	40	12	11	34	1.80
6762295--6763573	373	3.4	369	81	5	1315	40	12	11	34	1.80
6763448--6763681	123	1.9	121	81	7	285	34	11	17	36	1.86
6763499--6763725	123	1.8	123	80	11	268	36	11	15	37	1.83
6775950--6776010	21	3.1	19	79	11	68	57	0	0	42	0.98
6776122--6776193	20	3.8	19	81	17	87	44	1	1	52	1.18
6776322--6776363	15	2.5	17	82	14	52	42	0	2	54	1.13
6776328--6776362	18	1.9	19	88	11	56	45	0	2	51	1.16
6777063--6777136	21	3.3	23	76	16	84	32	1	0	66	1.00
6777395--6777436	17	2.4	18	80	4	50	16	4	0	78	0.91
6777431--6777483	23	2.3	24	81	15	67	45	1	0	52	1.11
6777941--6777991	25	2.0	25	88	7	77	62	0	3	33	1.13
6778115--6778174	19	2.9	19	87	9	75	55	1	1	41	1.20
6778115--6778160	20	2.3	20	92	7	76	60	0	0	39	0.97
6778260--6778292	8	3.9	9	84	15	52	33	9	0	57	1.30
6778277--6778409	46	2.9	47	76	12	109	36	2	6	54	1.37
6778336--6778433	28	3.6	27	75	10	74	37	2	5	55	1.34
6778370--6778410	16	2.4	18	88	8	59	39	2	2	56	1.26
6778371--6778411	17	2.4	17	83	0	55	36	2	2	58	1.24
6778520--6778557	18	2.1	18	95	0	67	28	2	0	68	1.03
6778545--6778619	38	2.0	37	84	5	98	29	4	2	64	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6778616--6778659	10	4.6	10	77	11	56	38	0	2	59	1.10
6778615--6778655	18	2.3	18	82	0	55	39	0	2	58	1.11
6778614--6778665	28	1.9	27	88	7	79	38	1	1	57	1.21
6778777--6778846	35	2.0	35	83	5	88	54	1	0	44	1.09
6779335--6779366	2	16.0	2	100	0	64	0	50	0	50	1.00
6779380--6779406	2	13.5	2	100	0	54	48	0	0	51	1.00
6783307--6783347	2	20.5	2	100	0	82	51	0	0	48	1.00
6790557--6790636	32	2.5	31	82	8	99	56	13	7	22	1.62
6790637--6790771	66	2.2	61	78	16	143	45	11	11	31	1.76
6791273--6791308	19	1.9	19	88	5	56	36	19	8	36	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125