genome.fa.s46.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  39  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7798168--7798205	19	2.0	19	89	0	58	47	5	31	15	1.68
7808630--7808679	18	2.7	19	87	6	68	34	4	6	56	1.43
7808803--7808879	26	2.8	26	72	12	73	45	0	5	49	1.24
7808831--7808882	24	2.2	23	83	10	61	42	0	5	51	1.25
7808959--7808988	7	4.1	7	95	4	51	80	0	0	20	0.72
7815981--7816026	2	23.0	2	100	0	92	50	0	0	50	1.00
7817610--7817748	70	2.0	68	91	5	226	37	7	14	40	1.75
7819112--7819375	21	12.7	21	66	7	72	32	6	11	49	1.64
7819216--7819296	41	2.0	41	85	11	112	30	2	12	54	1.51
7819239--7819375	63	2.2	62	80	3	150	32	5	13	48	1.64
7819461--7819499	20	2.0	20	89	0	60	38	10	10	41	1.73
7819566--7819715	21	7.3	21	74	8	105	35	5	10	49	1.59
7819609--7819715	20	5.2	20	74	8	83	36	1	11	50	1.49
7819578--7819715	41	3.4	42	74	11	135	34	4	10	50	1.56
7825198--7825225	9	3.1	9	100	0	56	67	0	21	10	1.20
7838143--7838180	20	1.9	20	94	0	67	31	5	0	63	1.17
7838469--7838505	19	1.9	19	89	10	58	24	0	16	59	1.37
7841701--7841761	21	2.9	22	73	9	56	34	0	3	62	1.12
7841562--7842388	433	1.9	423	92	4	1385	41	2	8	47	1.49
7842392--7842440	25	1.9	26	91	4	82	46	2	10	40	1.49
7843992--7844052	18	3.6	18	72	20	58	36	36	4	22	1.76
7844432--7844459	6	4.7	6	100	0	56	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7845906--7845962	29	1.9	29	85	3	78	42	7	14	36	1.72
7846420--7846472	3	17.7	3	100	0	106	32	0	0	67	0.91
7851647--7851683	19	2.0	19	89	5	58	27	2	2	67	1.17
7851695--7851747	21	2.4	23	84	9	74	45	0	0	54	0.99
7856243--7856276	17	1.9	17	88	5	50	58	2	17	20	1.51
7857787--7857897	56	2.0	56	81	11	131	52	1	1	44	1.22
7860798--7860835	18	2.2	18	86	13	53	23	0	13	63	1.30
7860899--7860952	13	3.9	13	75	20	56	79	3	1	14	0.95
7860887--7860969	19	4.2	19	70	20	55	79	3	4	12	1.01
7860887--7860969	10	9.1	9	71	15	55	79	3	4	12	1.01
7860875--7860952	41	1.9	41	85	15	108	76	5	3	14	1.09
7862092--7862459	115	3.2	114	78	6	332	46	14	18	20	1.84
7873968--7874013	21	2.2	22	88	7	69	30	0	8	60	1.26
7874181--7874222	13	3.3	13	80	6	50	78	2	2	16	0.96
7875065--7875100	3	12.0	3	88	11	56	66	0	2	30	1.06
7882525--7882571	18	2.6	18	82	0	58	40	21	23	14	1.90
7895659--7895704	20	2.2	21	92	3	76	52	19	2	26	1.58
7905526--7905576	27	2.0	27	88	7	79	68	5	11	13	1.37
7905526--7905575	25	2.0	25	88	4	73	68	6	12	14	1.39
7907074--7907131	28	2.0	29	83	9	75	39	5	1	53	1.33
7920345--7920411	34	2.0	34	96	0	125	31	14	7	46	1.73
7923565--7923626	32	1.9	32	93	0	106	27	9	33	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7924676--7924708	16	2.1	16	100	0	66	24	18	33	24	1.97
7924926--7924950	2	12.5	2	100	0	50	52	0	0	48	1.00
7925381--7925421	19	2.3	18	87	8	57	68	0	0	31	0.90
7925874--7925912	17	2.3	17	86	0	51	30	0	5	64	1.15
7927080--7927119	14	2.7	15	84	7	55	32	2	0	65	1.06
7930647--7930684	20	1.9	20	100	0	76	39	23	10	26	1.87
7932696--7932775	39	2.1	39	100	0	160	27	15	5	52	1.63
7932707--7932790	39	2.2	39	84	4	107	33	10	4	51	1.58
7938854--7938886	14	2.4	14	94	0	57	57	6	12	24	1.57
7939531--7939824	60	4.9	59	78	10	287	35	11	5	46	1.64
7939531--7939818	120	2.4	117	82	7	330	35	12	5	47	1.63
7940437--7940467	9	3.4	9	90	0	53	61	16	0	22	1.34
7941010--7941103	44	2.1	44	82	7	111	47	17	12	22	1.81
7941375--7941530	41	3.5	42	68	15	118	36	17	12	32	1.88
7941388--7941578	89	2.1	90	95	0	339	34	17	14	34	1.90
7941636--7941769	66	2.0	66	92	0	223	35	18	9	35	1.84
7941760--7941968	21	9.9	21	79	6	206	36	15	9	39	1.79
7941759--7941968	42	5.0	42	82	6	235	36	15	9	39	1.79
7941759--7941948	63	3.0	64	84	3	231	36	15	8	38	1.79
7943131--7943201	8	8.8	8	74	13	56	7	12	0	80	0.90
7943131--7943199	26	2.4	28	79	15	72	7	11	0	81	0.88
7943131--7943175	13	3.4	13	81	12	56	6	8	0	84	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7943131--7943201	25	2.9	24	79	10	72	7	12	0	80	0.90
7947117--7947406	121	2.4	120	86	6	401	34	11	6	47	1.65
7947117--7947406	60	4.8	61	75	10	283	34	11	6	47	1.65
7948356--7948417	6	10.0	6	75	6	52	74	4	1	19	1.09
7948383--7948433	18	2.8	18	84	0	66	70	3	3	21	1.20
7951046--7951113	21	3.2	21	82	0	82	35	10	7	47	1.66
7951107--7951166	22	2.8	20	76	11	66	35	6	6	51	1.54
7951539--7951593	21	2.6	21	80	5	58	36	10	10	41	1.75
7952045--7952097	27	2.0	27	88	3	81	32	1	9	56	1.42
7952069--7952216	21	7.0	21	74	9	97	33	8	10	47	1.68
7952069--7952216	42	3.5	41	72	10	129	33	8	10	47	1.68
7952069--7952216	63	2.3	64	76	11	160	33	8	10	47	1.68
7952173--7952214	22	1.9	22	90	0	66	26	7	14	52	1.67
7951083--7952650	528	3.0	523	82	8	1859	36	8	9	46	1.66
7952618--7952659	22	1.9	22	90	0	66	26	7	14	52	1.67
7953116--7953181	22	3.0	21	68	8	51	34	1	10	53	1.45
7953561--7953696	41	3.2	41	75	8	114	34	8	9	47	1.66
7953561--7953668	21	5.2	21	78	2	92	34	8	9	48	1.65
7954106--7954206	42	2.4	42	81	3	114	36	5	9	47	1.61
7954099--7954212	21	5.4	21	80	0	93	34	7	9	49	1.63
7953098--7960955	533	14.8	534	75	10	5927	35	8	9	46	1.66
7954645--7954699	21	2.7	20	85	5	65	36	10	7	45	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7954687--7954761	21	3.5	22	87	5	91	34	4	8	53	1.49
7955296--7955352	21	2.7	21	80	0	69	28	5	10	56	1.55
7955194--7955415	96	2.3	96	83	4	286	32	6	9	50	1.62
7955780--7955839	21	2.9	22	80	12	72	35	11	13	40	1.81
7955806--7955858	21	2.5	21	84	0	61	37	9	13	39	1.77
7956284--7956316	16	2.1	16	88	11	50	24	6	12	57	1.57
7956299--7956442	21	6.8	21	67	12	71	32	9	9	48	1.67
7956805--7956878	21	3.5	21	88	3	87	33	8	10	47	1.68
7956804--7956937	42	3.2	41	75	5	108	30	8	11	49	1.69
7957372--7957424	21	2.5	21	87	6	72	37	11	13	37	1.80
7957414--7957478	22	3.0	22	79	2	78	32	4	10	52	1.57
7957925--7958010	21	4.0	21	70	10	57	31	5	10	52	1.59
7958900--7958953	26	2.0	26	82	10	65	25	5	14	53	1.63
7958926--7958977	21	2.5	21	81	6	61	28	11	13	46	1.78
7958945--7958997	21	2.5	20	84	6	61	33	7	11	47	1.68
7959011--7959056	22	2.2	20	88	7	65	28	4	4	63	1.33
7959007--7959067	22	2.9	21	78	4	59	32	3	3	60	1.29
7959475--7959524	21	2.4	21	83	6	57	30	14	12	44	1.81
7959959--7960090	21	6.3	21	78	9	83	34	8	9	46	1.67
7959959--7960068	42	2.6	42	76	8	116	34	9	9	47	1.67
7960060--7960119	22	2.8	21	82	5	75	36	3	10	50	1.53
7960062--7960144	43	1.9	43	80	9	98	34	3	9	51	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7960521--7960597	21	3.7	21	82	3	84	32	5	14	48	1.66
7962420--7962700	60	4.8	58	79	6	273	34	9	6	49	1.62
7962419--7962700	116	2.4	119	82	5	356	34	9	6	49	1.63
7962419--7962705	59	4.8	58	81	6	310	34	10	6	48	1.63
7963282--7963324	23	1.9	22	85	4	59	58	13	0	27	1.37
7963691--7963748	24	2.7	21	81	10	55	79	6	1	12	1.00
7963897--7963962	16	4.2	16	76	1	53	36	16	16	30	1.91
7964057--7964394	114	3.0	114	87	2	491	35	15	13	35	1.87
7964465--7964684	21	10.8	21	78	9	231	36	15	10	37	1.83
7965838--7965931	9	10.3	9	76	18	72	9	10	2	77	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125