genome.fa.s46.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  69  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13667066--13667154	18	5.1	17	72	21	60	7	14	0	77	0.98
13670752--13670802	25	2.0	25	100	0	102	37	27	7	27	1.84
13679609--13679682	27	2.9	26	78	18	68	5	5	10	78	1.08
13680166--13680217	23	2.2	24	86	3	70	25	17	23	34	1.96
13681019--13681076	26	2.2	26	75	6	64	29	10	17	43	1.82
13681171--13681195	9	2.8	9	100	0	50	0	8	0	92	0.40
13682023--13683075	143	7.2	141	78	9	900	18	19	10	51	1.74
13682032--13683074	439	2.4	428	80	9	1061	18	19	10	51	1.74
13683046--13683080	11	3.1	11	87	4	52	0	8	2	88	0.61
13683215--13683258	21	2.2	20	88	12	63	2	13	4	79	0.98
13683880--13683942	22	2.8	23	84	13	78	9	6	3	80	0.98
13683886--13683942	23	2.5	23	86	11	73	10	5	3	80	0.98
13683883--13683962	34	2.4	33	76	11	83	8	6	5	80	1.03
13683900--13684000	12	8.7	12	69	23	56	5	4	8	80	1.02
13683893--13683999	18	5.7	19	73	14	80	6	4	8	80	1.02
13683905--13683989	19	4.1	21	79	11	79	4	3	10	81	0.97
13684849--13684923	18	3.9	18	70	14	60	41	10	22	25	1.86
13686356--13686398	21	2.0	21	86	0	59	30	16	20	32	1.95
13686652--13687022	141	2.7	136	76	8	372	18	19	9	52	1.73
13686747--13687058	141	2.2	144	80	10	336	21	19	8	50	1.74
13686434--13687074	284	2.2	277	78	9	621	19	19	9	50	1.74
13688624--13688665	17	2.6	16	81	7	50	21	2	0	76	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13691538--13691594	3	19.0	3	85	7	71	28	0	5	66	1.13
13696721--13696756	18	1.9	18	88	5	54	50	0	0	50	1.00
13696722--13696756	17	2.1	17	89	10	54	51	0	0	48	1.00
13698483--13698622	67	2.1	66	82	4	165	45	14	20	20	1.85
13706539--13706594	18	3.2	18	70	14	55	26	5	7	60	1.44
13706585--13706706	15	7.6	16	69	17	67	31	7	5	55	1.51
13706539--13706687	17	9.0	17	70	11	87	28	7	7	56	1.54
13706648--13706694	18	2.6	18	86	6	60	31	4	4	59	1.36
13710173--13710214	21	2.0	20	86	4	57	64	0	7	28	1.20
13713138--13713241	51	2.0	51	96	0	190	46	13	14	25	1.81
13713643--13713686	12	3.8	12	90	3	54	54	6	13	25	1.63
13721749--13721797	20	2.3	21	86	6	64	65	6	16	12	1.45
13725316--13725352	18	2.1	18	100	0	74	37	29	5	27	1.79
13735014--13735072	22	2.8	21	80	14	68	72	6	0	20	1.06
13736068--13736625	35	15.9	35	71	9	251	19	17	14	48	1.81
13736289--13736731	35	12.5	35	71	8	164	17	17	14	50	1.79
13736279--13736557	142	2.0	140	82	6	341	17	17	14	50	1.78
13736278--13736761	212	2.3	212	80	5	514	17	17	14	50	1.79
13736420--13736944	106	4.9	107	74	10	287	17	17	14	49	1.80
13737479--13737804	145	2.3	144	81	6	367	30	14	14	40	1.86
13740417--13740471	3	18.3	3	100	0	110	32	0	0	67	0.91
13758496--13758589	47	2.0	47	97	0	179	38	9	13	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13759808--13759927	38	3.0	41	74	12	122	55	6	7	30	1.53
13761937--13762277	145	2.4	145	83	4	411	44	12	13	30	1.80
13761944--13762332	145	2.7	145	78	5	410	43	12	13	30	1.81
13765202--13765251	16	3.1	16	83	13	59	0	4	10	86	0.71
13765202--13765289	12	7.5	11	75	17	61	1	11	6	80	0.94
13765190--13765257	6	11.7	6	84	9	61	0	7	10	82	0.85
13765202--13765239	7	5.4	7	81	12	51	0	0	13	86	0.56
13770589--13770976	144	2.7	144	77	7	401	41	11	12	34	1.79
13771552--13771750	106	1.9	106	84	4	267	39	15	17	28	1.89
13771739--13772071	126	2.6	125	81	8	381	36	14	15	33	1.88
13772199--13772294	37	2.6	37	85	1	122	36	17	15	30	1.91
13772218--13772384	90	1.9	90	84	0	226	35	17	13	34	1.88
13772337--13772426	37	2.4	37	88	1	135	34	17	17	30	1.94
13772130--13772519	127	3.1	129	81	2	416	36	16	14	33	1.89
13772438--13772519	37	2.2	37	86	2	112	35	17	13	34	1.88
13776635--13776662	14	2.0	14	100	0	56	28	28	7	35	1.84
13777858--13777894	3	12.3	3	100	0	74	32	0	0	67	0.91
13780645--13780689	21	2.1	21	87	0	63	8	22	11	57	1.60
13781121--13781503	144	2.7	142	79	6	396	42	10	14	32	1.79
13782574--13782635	3	20.7	3	79	0	70	38	1	25	33	1.66
13782577--13782623	18	2.6	18	96	0	85	38	2	23	36	1.67
13782637--13782670	3	11.3	3	100	0	68	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13782998--13783065	13	5.3	12	76	11	64	45	23	7	23	1.78
13783071--13783118	19	2.5	20	80	12	57	56	20	8	14	1.64
13783151--13783190	19	2.2	19	86	4	55	45	30	10	15	1.78
13787713--13787741	3	9.7	3	100	0	58	68	0	0	31	0.89
13791997--13792042	23	2.0	23	83	4	58	60	0	15	23	1.34
13794295--13794414	38	3.0	41	73	12	113	55	6	7	30	1.54
13799641--13799718	11	6.7	12	78	20	60	1	14	8	75	1.10
13799657--13799735	10	7.6	10	71	13	61	1	11	6	81	0.93
13799645--13799737	24	4.0	24	75	13	86	1	12	7	78	1.01
13799644--13799737	6	16.2	6	77	14	74	1	13	7	77	1.03
13800657--13800702	8	5.8	8	78	19	51	63	0	2	34	1.07
13805030--13805369	144	2.4	145	84	3	418	43	11	13	31	1.80
13805030--13805424	144	2.7	145	81	5	372	43	12	13	30	1.82
13805991--13806193	106	1.9	106	82	6	250	39	16	16	27	1.90
13806399--13806456	21	2.7	22	81	10	66	29	17	22	31	1.96
13806180--13806478	126	2.4	126	84	5	401	35	14	15	34	1.88
13806620--13806701	37	2.2	37	84	4	103	36	19	18	25	1.94
13806570--13806790	89	2.5	88	83	3	266	36	18	15	29	1.92
13806711--13806822	37	3.0	37	89	0	161	34	20	16	28	1.94
13806746--13806913	91	1.8	91	84	0	228	35	16	14	32	1.90
13806620--13807048	128	3.4	128	85	1	567	36	17	15	30	1.90
13806837--13806946	37	3.0	36	76	10	116	35	15	17	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13808032--13808068	18	2.2	17	90	9	58	16	0	13	70	1.17
13815371--13815396	9	2.9	9	100	0	52	23	30	0	46	1.53
13818698--13818747	3	16.7	3	95	0	91	34	2	0	64	1.05
13820594--13821139	145	3.8	143	75	10	475	30	15	15	39	1.88
13822582--13822622	3	13.7	3	100	0	82	65	0	0	34	0.93
13829683--13829742	25	2.4	25	84	13	72	35	15	13	36	1.86
13829694--13829743	25	2.0	25	96	0	91	34	16	14	36	1.88
13832808--13832866	6	10.3	6	87	5	52	1	10	13	74	1.14
13832808--13832891	41	2.0	41	82	13	102	1	11	10	76	1.09
13832857--13832899	16	2.8	14	83	16	50	0	13	4	81	0.84
13833807--13833838	9	3.7	9	95	4	57	59	0	0	40	0.97
13833807--13833839	17	1.9	17	93	0	57	57	0	0	42	0.98
13833837--13833874	3	12.7	3	100	0	76	68	0	0	31	0.90
13835355--13835423	27	2.6	27	85	0	102	39	15	15	28	1.89
13835803--13835828	3	8.7	3	100	0	52	34	0	30	34	1.58
13836471--13836514	3	14.7	3	85	0	61	65	6	0	27	1.17
13836471--13836581	12	9.2	12	88	0	78	65	16	0	17	1.32
13836496--13836590	3	31.7	3	86	0	91	66	22	1	10	1.29
13838032--13838085	27	2.0	27	92	0	90	31	22	18	27	1.97
13838470--13838527	3	19.3	3	100	0	116	67	0	0	32	0.91
13838873--13838914	19	2.2	19	91	0	66	47	11	16	23	1.80
13839105--13839138	17	2.0	17	88	0	50	41	8	0	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13839180--13839233	3	18.3	3	96	3	101	68	0	0	31	0.90
13839718--13839760	18	2.4	18	96	0	77	46	11	16	25	1.80
13841278--13841316	18	2.2	18	86	13	55	71	2	0	25	0.98
13841645--13841685	19	2.2	19	86	8	57	41	31	9	17	1.82
13841875--13841908	18	1.9	17	88	5	50	73	0	0	26	0.83
13846225--13846275	16	3.1	16	72	25	52	76	0	17	5	0.98
13846218--13846270	25	2.2	24	86	3	70	79	0	15	5	0.91
13846216--13846275	17	3.5	17	77	20	63	78	0	16	5	0.92
13846976--13847031	21	2.7	21	91	2	87	78	3	14	3	1.02
13847947--13847980	8	4.2	8	88	11	52	88	0	11	0	0.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125