genome.fa.s46.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  7  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
945317--945466	31	4.7	31	72	13	117	36	17	13	33	1.88
946891--946928	14	2.4	16	87	12	53	28	0	0	71	0.87
946891--946940	26	1.9	26	83	0	64	26	0	4	70	1.05
946972--947011	21	1.9	21	94	0	71	72	0	15	12	1.12
947630--947683	21	2.7	20	76	2	54	35	1	12	50	1.52
947659--947742	20	4.2	20	75	0	69	27	8	13	51	1.69
947787--947825	21	1.9	20	94	5	69	28	5	10	56	1.54
947921--947980	19	3.3	19	76	19	74	25	6	13	55	1.62
947886--948006	64	1.9	64	82	16	153	25	5	12	56	1.58
947921--948006	19	5.2	17	68	27	60	26	6	12	53	1.64
948017--948090	18	4.0	19	79	12	91	35	6	9	48	1.62
949552--949682	63	2.1	63	80	5	140	36	11	12	38	1.80
949676--950052	61	6.1	60	76	10	262	33	13	14	38	1.85
949662--949903	123	2.0	124	84	5	321	31	13	13	41	1.84
949599--949964	186	2.0	186	80	4	416	32	13	14	39	1.85
949859--950028	62	2.7	61	77	9	166	34	14	17	32	1.91
950115--950254	62	2.3	62	81	3	149	38	15	12	33	1.85
957452--957602	42	3.6	42	83	10	191	31	11	15	41	1.84
958488--958681	20	10.2	20	73	12	122	30	6	10	52	1.61
958726--958767	21	2.0	22	90	4	68	28	4	7	59	1.44
958725--958777	20	2.6	20	80	11	63	28	5	9	56	1.54
958928--959003	36	2.1	36	82	9	91	36	6	5	51	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
960619--960676	17	3.4	17	73	21	59	12	18	0	68	1.19
960627--960682	16	3.4	16	76	13	60	10	17	0	71	1.14
967389--967423	18	1.9	18	88	0	52	17	54	2	25	1.57
969451--969508	8	7.4	8	78	1	55	44	29	1	24	1.63
969450--969511	24	2.6	24	84	5	72	45	30	1	22	1.62
969450--969517	8	8.5	8	74	11	50	47	29	1	22	1.60
981105--981161	13	4.7	12	77	16	55	10	3	3	82	0.91
981104--981168	12	5.2	12	81	5	67	12	3	3	81	0.92
981208--981269	16	3.9	16	74	16	58	12	8	3	75	1.14
981287--981621	57	5.8	58	90	4	500	45	7	11	35	1.69
991761--991907	46	3.2	46	81	1	143	33	15	9	41	1.80
991901--992126	47	4.8	47	79	3	240	29	6	19	44	1.75
992293--992332	10	4.0	10	84	9	55	87	10	2	0	0.63
992263--992340	22	3.3	23	77	15	79	79	11	5	3	1.02
992365--992404	18	2.2	18	91	8	64	85	5	2	7	0.83
992365--992404	19	2.2	18	90	4	62	85	5	2	7	0.83
993741--993788	14	3.8	14	86	8	52	87	0	12	0	0.54
993759--993801	18	2.3	18	84	11	52	76	4	18	0	0.95
1008710--1008935	61	3.8	62	81	10	240	36	9	5	48	1.59
1008710--1008956	60	4.1	61	80	10	269	36	8	6	48	1.61
1008966--1009086	3	41.0	3	83	9	144	66	0	3	29	1.07
1009534--1009558	11	2.3	11	100	0	50	52	16	0	32	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1009844--1009964	4	32.2	4	69	14	64	67	0	2	29	1.03
1009852--1009974	22	5.3	22	70	23	76	69	0	1	29	0.98
1009842--1009958	26	4.5	27	79	13	113	66	0	3	29	1.08
1009845--1009945	53	1.9	53	82	11	127	65	0	2	31	1.08
1009945--1009979	6	5.7	6	90	6	52	77	2	0	20	0.90
1010038--1010102	3	21.3	3	77	14	62	66	0	1	32	1.01
1010416--1010539	22	6.2	21	65	20	61	48	30	3	17	1.63
1010363--1010447	14	6.0	14	75	17	68	48	31	3	16	1.63
1010441--1010559	34	3.4	34	74	11	105	48	27	2	21	1.63
1010365--1010503	14	9.8	14	69	13	61	48	29	3	18	1.65
1012447--1012496	2	25.0	2	100	0	100	50	0	0	50	1.00
1014088--1014454	145	2.5	145	79	3	344	37	14	16	30	1.89
1015356--1015396	18	2.3	18	86	0	55	17	4	9	68	1.35
1016038--1016091	19	2.9	18	83	5	72	25	1	12	59	1.44
1027842--1027882	21	2.0	20	85	4	55	31	21	9	36	1.86
1027812--1028001	98	1.9	98	95	0	344	35	20	6	38	1.78
1028804--1028846	19	2.3	18	81	14	52	55	4	0	39	1.20
1028917--1028948	2	16.0	2	93	0	55	46	0	3	50	1.17
1033710--1033740	16	1.9	16	100	0	62	48	0	12	38	1.42
1035865--1036329	244	1.9	246	89	1	729	41	5	9	43	1.61
1036366--1036407	2	20.5	2	81	13	50	45	2	4	47	1.36
1036366--1036407	19	2.2	20	83	12	52	45	2	4	47	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040830--1041115	142	2.0	142	99	0	563	37	9	6	46	1.61
1046171--1046589	61	6.9	61	83	5	473	46	7	12	32	1.70
1046187--1046589	124	3.3	122	88	5	563	46	7	13	33	1.71
1051032--1051092	12	5.3	12	81	15	76	78	0	13	8	0.95
1051032--1051102	11	6.4	11	81	14	67	78	0	14	7	0.94
1051032--1051110	21	3.6	21	84	10	88	78	0	13	7	0.95
1051056--1051110	10	5.4	10	78	8	58	81	0	12	5	0.84
1051032--1051121	45	2.0	45	83	12	114	77	0	14	7	0.97
1052812--1053311	41	12.1	40	85	9	504	25	16	21	37	1.93
1052812--1053311	165	3.0	165	90	2	772	25	16	21	37	1.93
1052812--1053311	206	2.4	206	88	3	731	25	16	21	37	1.93
1053316--1053384	1	69.0	1	73	0	57	86	7	1	4	0.73
1053317--1053384	27	2.8	23	83	16	77	86	7	1	4	0.74
1053360--1053565	110	1.9	105	90	6	324	38	12	18	30	1.88
1053771--1053800	13	2.3	13	94	0	51	23	3	6	66	1.30
1055697--1055737	6	7.3	6	88	5	52	17	2	0	80	0.82
1055757--1056088	59	5.5	61	85	6	412	44	7	14	33	1.74
1056075--1056101	13	2.1	13	100	0	54	51	0	33	14	1.43
1056017--1056159	71	2.0	71	84	0	187	44	6	18	31	1.74
1056089--1056226	58	2.4	57	84	7	172	44	7	13	34	1.72
1059841--1059893	27	2.0	27	96	0	97	33	11	18	35	1.87
1060343--1060408	13	4.8	13	75	15	53	72	3	15	9	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1061400--1061424	10	2.5	10	100	0	50	20	12	8	60	1.57
1062407--1062582	91	1.9	92	85	1	246	35	17	21	25	1.95
1062942--1062981	16	2.4	17	84	16	57	12	15	7	65	1.47
1064716--1064755	11	3.6	11	86	0	62	20	0	30	50	1.49
1064715--1064761	22	2.1	22	92	0	76	25	0	27	46	1.53
1064782--1064937	52	3.0	52	85	2	208	40	8	25	26	1.83
1065382--1065437	24	2.3	24	87	3	76	37	7	32	23	1.82
1065702--1065763	11	5.6	11	84	0	88	19	0	30	50	1.48
1065701--1065763	22	2.9	22	97	0	117	20	0	30	49	1.49
1065791--1065945	52	3.0	52	86	4	208	40	8	24	26	1.83
1066367--1066431	24	2.6	25	85	4	87	40	9	29	21	1.84
1066696--1066737	11	3.8	12	81	15	54	21	0	28	50	1.49
1066695--1066737	22	2.0	22	90	9	70	23	0	27	48	1.51
1066762--1066917	52	3.0	52	85	2	199	40	9	25	24	1.85
1067361--1067416	24	2.3	25	93	3	96	37	10	32	19	1.86
1064689--1068296	985	3.7	986	93	3	6210	30	9	27	31	1.89
1067681--1067722	11	3.8	11	93	0	75	16	0	30	52	1.44
1067747--1067902	52	3.0	52	86	4	210	41	7	26	25	1.82
1072994--1073044	25	2.0	25	96	0	93	21	23	13	41	1.89
1074326--1074379	12	4.4	12	79	4	63	20	0	9	70	1.14
1074334--1074395	25	2.5	25	81	2	81	19	0	11	69	1.18
1076941--1077005	20	3.2	19	75	16	60	80	1	13	4	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1076975--1077007	13	2.6	13	90	4	50	84	0	15	0	0.61
1078035--1078091	25	2.3	25	93	3	98	24	17	22	35	1.95
1078136--1078161	13	2.0	13	100	0	52	23	7	15	53	1.67
1078450--1078575	24	5.4	24	65	7	71	34	9	10	46	1.71
1078420--1078665	92	2.7	91	80	9	243	35	9	10	44	1.70
1078450--1078670	46	4.8	44	72	10	117	34	9	9	46	1.69
1078897--1078962	18	3.7	18	71	4	62	30	18	10	40	1.84
1078900--1078968	35	2.0	35	82	0	84	30	17	11	40	1.85
1079353--1079450	43	2.3	43	87	0	133	30	11	13	44	1.78
1079723--1079798	24	3.3	23	78	10	75	21	0	11	67	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125