genome.fa.s46.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  23  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4141300--4141346	17	2.7	17	90	3	67	53	2	0	44	1.12
4142670--4142713	3	14.7	3	100	0	88	31	0	0	68	0.90
4142899--4143374	119	4.0	120	84	6	578	44	6	8	40	1.60
4143096--4143139	17	2.6	16	78	7	52	54	0	4	40	1.21
4142924--4143374	234	1.9	236	84	7	610	44	6	8	40	1.59
4143328--4143375	18	2.6	18	80	9	53	58	0	2	39	1.10
4143361--4143446	38	2.4	35	75	16	86	44	6	10	38	1.66
4144492--4144530	6	6.5	6	90	0	51	58	0	2	38	1.12
4146852--4146878	2	13.5	2	100	0	54	51	0	0	48	1.00
4147086--4147119	2	17.0	2	100	0	68	50	0	0	50	1.00
4152831--4152877	21	2.2	21	84	0	58	74	12	2	10	1.16
4153531--4153965	119	3.7	119	83	2	509	44	16	21	17	1.86
4153901--4154028	63	2.0	63	84	0	166	51	15	15	17	1.77
4165190--4165243	28	1.9	28	85	7	74	77	1	5	14	1.03
4166052--4166103	3	17.7	3	80	4	61	71	1	1	25	1.07
4166131--4166162	15	2.1	15	94	0	55	34	25	25	15	1.95
4166656--4166692	12	2.9	13	88	8	58	27	0	0	72	0.84
4166784--4166834	24	2.1	25	81	3	59	43	1	15	39	1.58
4167214--4167366	70	2.2	70	86	3	209	41	4	11	42	1.62
4168937--4168970	15	2.2	16	94	5	61	20	2	0	76	0.92
4169286--4169320	3	11.7	3	100	0	70	34	0	0	65	0.93
4172470--4172517	4	12.0	4	86	0	51	39	0	10	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4172470--4172515	8	5.8	8	92	0	74	39	0	10	50	1.38
4172709--4172749	13	3.2	13	82	0	55	39	0	0	60	0.96
4173502--4173605	32	3.3	31	72	8	86	43	6	6	43	1.57
4173876--4173923	10	4.7	10	75	14	53	29	4	6	60	1.40
4173895--4173931	11	3.5	11	92	3	58	35	0	5	59	1.20
4175751--4175790	21	1.9	21	84	0	53	62	0	0	37	0.95
4175800--4175856	15	3.8	15	75	13	55	52	0	0	47	1.00
4175808--4175856	15	3.1	15	81	18	64	55	0	0	44	0.99
4176586--4176663	41	1.9	40	85	12	106	44	2	1	51	1.23
4180914--4180994	26	3.2	25	71	13	69	64	6	2	27	1.30
4180923--4180994	23	3.0	24	72	11	67	62	5	2	29	1.32
4181153--4181177	2	12.5	2	100	0	50	48	0	0	52	1.00
4181278--4181328	18	2.9	18	91	8	79	25	1	5	66	1.24
4181876--4181922	24	1.9	24	83	12	60	36	0	4	59	1.17
4183110--4183350	118	2.1	117	79	2	250	36	7	5	50	1.54
4185097--4185154	27	2.1	28	84	9	75	43	0	1	55	1.10
4185172--4185216	20	2.3	19	77	11	54	53	0	0	46	1.00
4188103--4188157	15	3.7	15	76	9	58	0	34	20	45	1.51
4194933--4194964	2	16.0	2	100	0	64	50	0	0	50	1.00
4204139--4204199	30	2.0	30	93	0	104	40	11	13	34	1.80
4209774--4209994	115	1.9	115	91	0	361	36	19	9	35	1.83
4212452--4212495	17	2.6	17	92	3	72	36	6	0	56	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4215298--4215340	22	2.0	22	86	4	61	74	6	4	13	1.19
4226857--4226904	17	2.8	17	79	17	55	85	2	8	4	0.80
4226858--4226904	19	2.6	18	83	6	58	87	2	8	2	0.71
4226967--4227311	151	2.4	148	78	9	345	54	8	14	22	1.68
4228504--4228555	12	4.3	12	80	9	52	71	5	7	15	1.29
4228522--4228556	18	1.9	19	88	11	56	74	0	11	14	1.08
4229376--4229418	19	2.3	18	84	15	52	13	13	4	67	1.38
4235148--4235213	33	1.9	35	90	6	109	22	4	10	62	1.46
4244874--4244909	16	2.3	16	95	4	65	11	11	8	69	1.37
4251842--4251876	14	2.6	13	86	4	52	0	11	0	88	0.51
4264901--4264959	20	3.0	21	82	7	61	52	5	5	37	1.46
4266750--4266784	17	2.1	17	89	10	54	25	2	0	71	1.00
4271728--4271753	3	8.7	3	100	0	52	0	65	0	34	0.93
4272723--4272766	21	2.0	22	82	4	54	54	4	4	36	1.41
4273593--4273650	30	1.9	30	82	6	73	48	3	3	44	1.36
4273826--4273884	13	4.8	13	71	10	52	62	0	3	33	1.12
4275589--4275666	17	4.4	17	69	12	57	42	1	1	55	1.16
4276560--4276589	15	2.1	14	93	6	51	36	0	3	60	1.14
4278102--4278258	73	2.1	73	84	3	208	50	4	5	39	1.46
4278155--4278431	153	1.8	151	82	4	351	50	2	7	39	1.43
4278227--4278344	40	2.9	41	79	5	132	50	0	7	41	1.37
4278367--4278442	20	3.8	20	75	6	57	52	1	5	40	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4278672--4278728	23	2.5	23	82	5	71	50	0	0	49	1.00
4280481--4280522	21	2.0	20	82	13	50	50	0	2	47	1.14
4280166--4280840	233	2.9	228	88	4	951	45	4	9	40	1.56
4280849--4280912	27	2.2	28	81	13	69	46	0	3	50	1.17
4281044--4281068	2	12.5	2	100	0	50	48	0	0	52	1.00
4281704--4281767	13	4.5	13	72	24	58	65	1	1	31	1.11
4281811--4281871	12	5.4	11	74	14	61	52	1	0	45	1.10
4281912--4281957	13	3.6	13	77	11	51	28	0	2	69	1.00
4294024--4294089	24	2.8	24	80	11	73	36	9	12	42	1.74
4294773--4294820	21	2.1	22	88	11	71	16	2	18	62	1.42
4294773--4294820	10	4.2	12	86	13	57	16	2	18	62	1.42
4295221--4295265	13	3.1	15	81	15	58	26	0	2	71	0.98
4295330--4295369	11	3.6	11	86	10	55	60	10	0	30	1.30
4295339--4295365	10	2.7	10	100	0	54	66	7	0	25	1.17
4295376--4295474	32	3.2	31	67	25	84	50	6	8	35	1.57
4295350--4295676	60	5.8	57	83	8	343	50	5	10	33	1.60
4295392--4295485	28	3.2	28	64	26	68	47	6	7	38	1.57
4295591--4295677	27	3.2	27	69	15	79	45	4	13	35	1.64
4299582--4299614	13	2.4	14	85	10	50	75	0	24	0	0.80
4304196--4304276	27	2.9	28	88	3	128	33	20	9	35	1.86
4308206--4308362	17	9.2	17	69	10	88	33	17	8	40	1.80
4308162--4308340	34	5.3	34	77	5	148	36	18	9	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4308202--4308328	68	1.9	68	91	3	211	35	18	7	37	1.80
4308620--4308912	86	3.4	85	82	2	309	22	17	13	46	1.83
4308620--4308938	172	1.9	172	79	2	372	23	16	14	46	1.83
4308730--4308938	86	2.4	86	84	3	260	23	16	13	46	1.82
4310031--4310059	14	2.0	15	93	6	51	62	0	0	37	0.96
4310030--4310068	16	2.5	16	91	4	62	64	2	0	33	1.08
4310062--4310288	59	3.9	60	78	8	204	48	5	10	35	1.61
4310070--4310288	60	3.8	59	79	7	200	47	5	10	36	1.62
4316073--4316132	24	2.5	24	84	7	77	36	3	13	46	1.60
4322398--4322437	21	1.9	21	85	10	55	67	5	25	2	1.23
4327638--4327694	12	4.7	12	74	18	55	52	0	0	47	1.00
4328097--4328124	14	2.0	14	100	0	56	50	21	14	14	1.78
4332250--4332290	6	7.0	6	83	10	50	68	0	0	31	0.90
4332257--4332298	21	1.9	21	90	9	66	71	0	0	28	0.86
4332255--4332294	16	2.4	17	95	4	73	70	0	0	30	0.88
4338109--4338152	23	1.9	23	95	0	79	29	25	13	31	1.94
4350462--4350499	3	12.7	3	100	0	76	68	0	0	31	0.90
4357703--4357788	38	2.3	38	83	4	102	39	9	9	41	1.69
4358435--4358473	19	2.0	20	95	5	71	15	20	10	53	1.70
4362076--4362129	26	2.1	26	96	0	99	46	7	1	44	1.42
4369216--4369256	11	3.8	11	87	3	57	75	0	0	24	0.80
4369216--4369259	16	2.6	17	85	7	63	75	0	0	25	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4380560--4380597	11	3.6	11	82	10	53	63	0	0	36	0.95
4385576--4385619	23	2.0	22	86	4	61	43	0	2	54	1.12
4386933--4387011	29	2.6	31	76	6	90	53	1	2	43	1.22
4387011--4387047	18	2.0	19	89	5	58	40	2	5	51	1.39
4387918--4387993	32	2.4	32	84	2	91	32	5	15	46	1.69
4392433--4392462	10	2.8	11	90	10	53	20	0	0	80	0.72
4393219--4393285	22	2.8	24	82	11	75	58	0	1	40	1.07
4393230--4393285	25	2.1	27	87	6	80	60	0	1	37	1.07
4394961--4395023	32	2.0	32	81	6	74	25	7	0	66	1.18
4396408--4396468	23	2.7	23	77	10	63	55	3	6	34	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125