genome.fa.s46.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  45  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9105077--9105130	25	2.2	25	86	3	74	22	25	11	40	1.87
9106697--9106741	23	2.0	22	83	12	56	31	0	4	64	1.13
9109102--9109134	15	2.2	15	94	0	57	60	3	0	36	1.12
9110447--9110486	3	13.3	3	89	0	62	30	0	40	30	1.57
9110832--9110890	18	3.1	18	77	13	64	32	30	5	32	1.79
9110841--9110908	18	3.5	20	80	13	72	35	25	5	33	1.80
9110859--9110938	18	4.6	18	76	14	87	35	21	5	38	1.75
9113820--9114021	101	2.0	102	82	4	248	33	7	13	45	1.71
9124305--9124439	3	44.7	3	68	20	68	28	2	2	65	1.21
9124304--9124379	23	3.3	23	76	12	66	23	3	2	69	1.18
9124348--9124427	35	2.3	35	80	16	87	30	3	2	63	1.25
9126401--9126456	22	2.5	23	70	18	55	51	1	42	3	1.29
9126420--9126460	10	3.8	11	81	15	50	58	0	36	4	1.20
9128988--9129017	2	15.0	2	92	0	51	46	0	0	53	1.00
9129643--9129725	28	3.0	27	72	13	71	44	3	2	49	1.32
9131812--9131871	12	4.9	12	76	11	50	46	28	5	20	1.71
9131803--9131881	25	3.2	24	73	5	61	44	26	7	21	1.79
9131835--9131888	12	4.5	12	83	0	63	42	31	7	18	1.78
9132847--9133170	175	1.9	175	81	6	406	42	13	11	32	1.80
9133020--9133751	239	3.1	237	83	6	885	41	13	10	34	1.79
9139795--9140057	140	1.9	140	83	7	345	31	8	15	44	1.77
9146229--9146255	4	6.8	4	100	0	54	25	0	22	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9146410--9146448	20	2.0	19	85	5	51	66	2	0	30	1.05
9146672--9146714	17	2.6	16	85	7	50	79	0	4	16	0.90
9146759--9146812	17	3.2	17	81	5	56	61	0	1	37	1.07
9147007--9147062	8	7.1	8	76	8	53	82	0	1	16	0.76
9147007--9147069	20	3.2	20	78	17	69	77	1	1	19	0.93
9147011--9147061	26	2.0	26	88	7	77	82	0	1	15	0.76
9153374--9153704	63	5.2	63	86	5	414	17	19	39	23	1.92
9153425--9153526	33	3.2	33	65	18	79	18	16	40	24	1.91
9153374--9153848	126	3.6	130	80	10	423	18	18	38	24	1.93
9153639--9153782	78	1.8	78	93	0	252	15	19	39	25	1.91
9153717--9153848	63	2.1	63	91	0	210	18	16	37	27	1.93
9155276--9155317	13	3.2	13	83	12	50	30	0	0	69	0.89
9155983--9156012	2	14.5	2	93	6	51	46	0	3	50	1.18
9161623--9161672	21	2.4	21	83	3	66	38	4	6	52	1.45
9171994--9172031	2	19.0	2	100	0	76	50	0	0	50	1.00
9180647--9180689	20	2.3	19	85	14	63	46	0	4	48	1.22
9181285--9181343	20	3.0	19	71	22	50	37	5	3	54	1.39
9181287--9181331	20	2.2	20	84	11	56	33	2	2	62	1.20
9181796--9181827	16	1.9	17	93	6	57	18	3	9	68	1.30
9183335--9183393	20	3.0	19	71	22	50	37	5	3	54	1.39
9183337--9183381	20	2.2	20	84	11	56	33	2	2	62	1.20
9184736--9184764	2	15.0	2	92	7	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9185956--9185998	20	2.1	20	82	4	50	30	9	2	58	1.42
9192377--9192595	62	3.6	60	84	4	260	32	11	7	47	1.69
9192963--9193011	3	16.3	3	91	0	71	65	4	2	28	1.22
9193773--9193852	23	3.2	24	73	23	60	70	2	2	25	1.13
9193785--9193852	12	5.4	12	73	22	50	67	2	2	26	1.19
9193819--9193869	20	2.6	19	87	6	66	76	3	1	17	1.03
9194047--9194260	44	4.9	44	81	5	220	40	19	14	25	1.89
9194227--9194488	44	6.1	42	79	7	242	39	19	12	28	1.88
9194911--9194949	20	2.0	20	89	0	60	30	20	12	35	1.90
9196188--9196287	9	10.9	9	83	11	123	9	15	1	75	1.10
9200326--9200561	58	3.9	60	81	4	278	33	11	6	48	1.65
9200557--9200585	15	2.0	15	93	6	51	41	0	0	58	0.98
9207798--9207845	25	2.0	24	83	4	60	52	2	4	41	1.32
9210148--9210349	101	2.0	102	82	4	248	45	13	7	33	1.71
9213935--9214471	272	2.0	272	97	0	1011	30	18	11	39	1.86
9217414--9217463	25	2.1	23	88	7	73	44	10	0	46	1.37
9219278--9219325	25	1.9	25	91	0	78	50	12	22	14	1.77
9220999--9221036	3	12.7	3	100	0	76	31	0	0	68	0.90
9221546--9221594	17	3.0	16	80	17	57	55	2	2	40	1.23
9221872--9221926	26	2.3	23	82	14	67	34	3	3	58	1.33
9221873--9221933	25	2.4	25	84	10	72	36	3	3	57	1.31
9222087--9222131	5	9.0	5	100	0	90	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9223088--9223160	29	2.5	29	82	8	103	30	9	5	54	1.55
9224202--9224248	22	2.2	22	85	7	62	27	2	10	59	1.42
9226245--9226682	228	1.9	228	88	1	664	34	13	18	34	1.89
9227539--9227615	6	12.5	6	76	13	59	19	1	0	79	0.81
9227539--9227610	17	4.2	18	76	16	73	19	1	0	79	0.81
9227550--9227615	33	1.9	35	87	6	100	21	1	0	77	0.85
9227541--9227626	29	3.1	26	79	14	84	18	2	1	77	0.93
9227698--9227737	11	3.5	12	75	25	50	27	5	5	62	1.37
9227698--9227750	22	2.5	21	87	6	72	24	5	7	62	1.44
9227698--9227759	20	3.0	20	77	13	63	24	4	6	64	1.37
9227731--9227792	32	1.9	32	84	12	83	22	3	6	67	1.28
9227734--9227802	27	2.6	27	73	13	70	21	2	5	69	1.23
9228600--9228729	20	6.4	20	70	17	65	16	3	3	76	1.03
9228613--9228748	15	8.3	15	69	21	71	18	3	2	75	1.09
9228689--9228748	19	3.2	19	79	11	70	20	5	0	75	0.99
9228603--9228748	23	6.4	22	71	14	84	17	4	2	75	1.08
9228608--9228746	64	2.2	64	77	14	153	17	4	2	74	1.10
9228755--9229037	58	4.7	58	76	13	222	46	6	10	36	1.64
9228766--9229005	62	3.9	60	81	10	220	45	7	10	36	1.67
9228815--9229005	64	3.0	64	84	6	221	46	6	10	36	1.64
9232508--9232549	20	2.0	21	90	4	68	54	4	2	38	1.34
9232793--9232841	2	24.5	2	100	0	98	0	51	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9234322--9234358	17	2.1	18	90	5	58	21	0	8	70	1.13
9236305--9236387	41	2.0	41	92	0	139	46	13	8	31	1.72
9238298--9238333	1	36.0	1	100	0	72	100	0	0	0	0.00
9238718--9238995	139	2.0	139	92	0	457	32	12	11	43	1.78
9240380--9240404	1	25.0	1	100	0	50	100	0	0	0	0.00
9241716--9242018	145	2.1	143	83	6	382	39	10	9	39	1.72
9244333--9244365	2	16.5	2	100	0	66	51	0	0	48	1.00
9251419--9251481	20	3.2	20	76	13	67	76	4	0	19	0.96
9259069--9259140	30	2.4	30	79	4	74	61	5	0	33	1.19
9259097--9259136	21	1.9	21	85	10	55	62	2	0	35	1.09
9259099--9259143	19	2.4	19	88	0	63	62	4	0	33	1.15
9259415--9259473	31	1.9	30	86	3	82	61	5	0	33	1.18
9259635--9259672	20	1.9	20	84	10	51	44	7	7	39	1.63
9259926--9259973	20	2.3	22	85	7	64	35	0	10	54	1.35
9260075--9260189	10	11.5	10	71	10	74	34	3	3	58	1.32
9260069--9260170	29	3.5	29	77	7	100	32	3	3	59	1.34
9259960--9260180	9	23.7	9	68	13	81	31	3	5	59	1.36
9259959--9260180	19	11.8	19	68	12	75	31	3	5	59	1.35
9260148--9260196	10	4.6	10	80	12	53	30	2	4	63	1.24
9260539--9260638	30	3.4	28	75	18	87	41	13	1	45	1.49
9260680--9260763	29	2.9	29	86	12	118	63	3	0	33	1.12
9261197--9261229	16	2.0	17	88	5	50	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9262557--9262660	40	2.6	39	77	12	104	55	8	16	19	1.66
9263004--9263086	23	3.5	22	69	20	60	48	0	1	50	1.08
9263020--9263085	23	2.7	24	79	13	73	43	0	1	54	1.09
9263062--9263099	19	2.0	20	89	5	60	50	0	0	50	1.00
9263094--9263133	16	2.4	17	87	4	55	35	0	2	62	1.09
9263206--9263257	21	2.5	21	84	3	61	42	11	0	46	1.40
9263405--9263526	48	2.5	48	85	2	165	40	4	9	44	1.59
9263498--9263549	22	2.3	23	83	6	72	50	5	3	40	1.45
9263781--9263896	60	2.0	60	89	5	182	53	12	8	25	1.67
9264209--9264321	58	1.9	58	82	3	138	23	27	20	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125