genome.fa.s46.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  50  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9986655--9986719	22	3.0	22	79	2	78	32	15	23	29	1.95
9986669--9986726	22	2.6	22	78	10	57	31	15	24	29	1.95
9986610--9987099	132	3.7	131	80	2	516	41	15	17	25	1.88
9986916--9986983	22	3.1	21	87	6	91	30	16	17	35	1.92
9986610--9987099	264	1.9	263	84	1	658	41	15	17	25	1.88
9987084--9987246	83	2.0	84	88	1	247	38	17	11	33	1.86
9989237--9989275	16	2.4	17	86	4	53	0	10	7	82	0.86
9989229--9989274	24	1.9	24	90	0	74	2	8	6	82	0.91
9989236--9989283	17	2.8	17	87	6	62	0	8	8	83	0.82
9991156--9991257	51	2.0	51	92	0	168	46	10	8	34	1.70
9991384--9991424	20	2.0	20	90	0	64	31	2	17	48	1.60
10001800--10001847	22	2.2	21	85	3	60	37	8	12	41	1.73
10008142--10008179	18	2.1	19	90	5	60	44	2	0	52	1.14
10008151--10008206	18	3.1	18	80	10	51	46	1	0	51	1.11
10008167--10008210	18	2.3	19	80	11	54	47	2	0	50	1.13
10015338--10015385	3	16.0	3	91	8	80	31	2	0	66	1.03
10015395--10015427	6	5.7	6	85	7	50	0	15	0	84	0.61
10015393--10015427	11	3.1	11	91	4	52	0	14	0	85	0.59
10015395--10015430	17	2.1	17	89	0	54	0	16	0	83	0.65
10017015--10017048	12	2.8	12	90	4	50	67	2	0	29	1.05
10017096--10017487	195	2.0	195	92	3	646	37	10	15	36	1.82
10017949--10018011	10	6.0	10	77	17	65	84	9	1	4	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10017951--10018010	14	4.4	13	73	17	50	85	8	1	5	0.81
10027431--10028116	46	14.8	46	86	8	934	26	13	24	35	1.92
10027438--10028116	91	7.4	90	89	6	924	26	13	24	35	1.92
10028289--10028318	3	10.0	3	100	0	60	33	0	0	66	0.92
10030480--10030539	22	2.7	22	92	0	93	26	20	26	26	1.99
10030415--10030676	130	2.0	128	87	3	373	35	17	20	26	1.95
10030830--10030854	8	3.1	8	100	0	50	60	0	0	40	0.97
10030726--10030977	131	1.9	131	95	0	459	37	15	15	30	1.89
10031042--10031149	40	2.7	41	88	7	150	33	14	17	34	1.91
10031488--10031538	23	2.2	24	85	3	68	29	0	5	64	1.17
10031481--10031532	23	2.2	24	89	6	79	26	1	5	65	1.26
10032814--10032871	19	3.0	19	92	7	91	0	0	6	93	0.36
10032819--10032880	22	2.8	22	92	0	97	1	1	4	91	0.52
10032812--10032880	30	2.3	30	85	5	104	2	2	5	88	0.69
10032814--10032871	1	58.0	1	85	0	80	0	0	6	93	0.36
10038642--10038724	16	5.4	16	78	8	75	19	2	30	48	1.62
10038638--10038730	32	3.0	33	81	10	92	19	2	30	48	1.61
10039101--10039128	12	2.3	12	100	0	56	78	0	0	21	0.75
10039084--10039126	22	2.0	22	86	9	61	69	2	0	27	1.00
10039894--10039936	22	2.0	22	86	9	61	34	9	23	32	1.87
10040186--10040240	15	3.7	15	75	22	53	43	0	0	56	0.99
10040285--10040430	22	6.9	21	87	3	204	35	9	17	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10040285--10040430	43	3.4	43	88	6	192	35	9	17	37	1.82
10040794--10040836	21	2.0	21	95	0	77	34	13	16	34	1.88
10041175--10041370	44	4.5	42	75	12	157	27	12	15	44	1.82
10041180--10041378	86	2.3	86	82	6	249	26	13	15	44	1.83
10041178--10041407	86	2.7	85	77	12	227	25	12	14	46	1.80
10041789--10041826	20	1.9	20	88	0	58	42	2	2	52	1.29
10042903--10042938	19	1.9	18	88	5	54	69	0	2	27	1.02
10050234--10050287	21	2.5	22	84	6	74	53	5	0	40	1.24
10056755--10056877	64	1.9	64	90	3	194	40	12	4	42	1.64
10059372--10059493	63	1.9	64	93	1	210	39	13	4	43	1.63
10067688--10067717	14	2.1	14	93	0	51	16	0	6	76	0.99
10070325--10070456	65	2.0	65	95	0	237	37	10	9	41	1.73
10082654--10082679	7	3.7	7	100	0	52	53	0	0	46	1.00
10084921--10084983	17	3.6	17	72	16	56	50	3	0	46	1.17
10086813--10086891	32	2.5	32	87	2	115	45	12	10	31	1.75
10087518--10087556	20	1.9	20	84	5	51	43	10	5	41	1.61
10088780--10089146	188	2.0	185	81	7	429	38	9	7	43	1.67
10090075--10090136	4	14.5	4	79	12	54	74	0	4	20	1.00
10090075--10090136	26	2.4	26	89	10	92	74	0	4	20	1.00
10090096--10090154	5	12.2	5	82	13	63	74	1	1	22	1.00
10090075--10090153	22	3.7	21	77	14	72	73	1	3	21	1.06
10090432--10090668	43	5.6	43	76	9	202	43	18	14	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10090463--10090665	83	2.4	85	81	4	241	41	18	14	24	1.88
10090639--10090705	27	2.5	27	85	4	91	46	17	16	19	1.85
10090670--10090919	43	6.0	43	75	5	217	43	18	11	26	1.84
10090596--10090735	70	2.0	70	88	5	212	45	19	15	20	1.86
10090558--10090778	113	2.0	113	86	0	307	44	18	13	23	1.85
10090666--10090865	82	2.4	83	81	6	217	45	17	11	25	1.82
10090670--10090912	125	1.9	126	81	2	292	44	18	11	25	1.84
10090431--10090903	239	2.0	238	81	3	558	43	18	13	24	1.86
10091200--10091242	21	2.0	21	86	0	59	30	18	18	32	1.95
10091508--10091618	21	4.9	21	77	16	105	39	17	8	35	1.79
10091508--10091563	28	2.0	29	92	3	96	42	21	5	30	1.75
10091532--10091618	21	4.0	22	89	3	115	41	14	8	35	1.76
10092656--10092716	19	2.9	19	88	11	77	4	11	0	83	0.79
10092658--10092715	9	5.9	9	82	13	62	5	12	0	82	0.82
10092612--10092716	32	3.1	32	72	13	86	7	15	0	77	0.99
10093073--10093102	7	4.3	7	100	0	60	13	13	0	73	1.10
10093073--10093115	14	2.9	14	80	12	50	11	11	0	76	1.02
10096909--10097264	186	1.9	185	83	7	454	38	10	7	42	1.69
10097329--10097407	23	3.5	23	81	11	101	59	3	5	31	1.37
10097634--10097667	17	2.0	17	88	0	50	58	0	32	8	1.29
10101029--10101063	10	3.4	10	88	7	52	31	51	5	11	1.61
10101030--10101062	11	3.1	11	91	4	50	30	54	6	9	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10101254--10101298	12	3.9	11	77	11	54	75	20	4	0	0.97
10102367--10102454	16	5.4	16	81	8	106	46	36	1	15	1.54
10106905--10107059	77	2.0	77	100	0	310	35	18	18	28	1.94
10111338--10111383	24	1.9	24	100	0	92	47	23	15	13	1.80
10111335--10111392	24	2.7	21	80	17	73	51	22	13	12	1.74
10123182--10123217	17	2.1	17	89	0	54	47	0	0	52	1.00
10129008--10129059	21	2.5	21	90	6	79	50	0	0	50	1.00
10129008--10129059	22	2.5	22	93	6	90	50	0	0	50	1.00
10129027--10129096	30	2.3	30	77	0	77	57	1	0	41	1.08
10129075--10129120	19	2.3	21	81	7	60	67	0	0	32	0.91
10133775--10133804	16	1.9	15	93	6	51	60	16	0	23	1.36
10145651--10145704	20	2.7	20	75	11	56	53	22	0	24	1.46
10150813--10150867	22	2.5	22	90	0	83	34	3	12	49	1.59
10153239--10153282	23	1.9	23	86	9	63	18	2	2	77	0.98
10153236--10153282	14	3.4	14	75	19	53	19	2	2	76	0.99
10164086--10164125	20	2.1	19	86	13	55	42	7	5	45	1.54
10164867--10164911	23	2.0	23	86	0	63	48	8	2	40	1.47
10166803--10166853	22	2.4	21	80	9	59	37	9	0	52	1.34
10175842--10175880	6	6.8	6	88	11	64	15	15	53	15	1.73
10195592--10195704	16	7.2	15	80	13	104	49	29	0	20	1.55
10195590--10195699	7	13.9	8	70	24	65	48	30	0	20	1.56
10195620--10195719	15	6.7	14	74	10	74	50	30	1	19	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10195619--10195707	45	2.0	45	86	8	128	49	31	1	17	1.55
10195592--10195735	60	2.3	62	81	11	163	48	30	0	20	1.54
10195618--10195751	16	8.4	16	71	19	61	48	30	0	20	1.55
10195691--10195764	37	2.1	35	85	10	96	47	33	0	18	1.49
10195663--10195759	51	1.9	51	81	12	119	48	30	0	20	1.50
10197241--10197478	118	2.0	118	95	0	422	34	16	23	25	1.95
10203730--10204072	33	10.6	32	86	6	399	30	20	15	33	1.94
10203726--10204072	65	5.4	65	84	5	418	30	19	15	33	1.93
10204656--10204850	87	2.2	87	87	0	273	20	18	21	39	1.93
10204745--10204944	109	1.8	109	83	2	267	19	22	21	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125