genome.fa.s46.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  25  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4673987--4674067	28	3.0	26	76	15	83	45	0	1	53	1.08
4690401--4690434	15	2.3	15	94	0	59	91	8	0	0	0.43
4690394--4690429	17	2.1	18	89	5	56	91	5	2	0	0.49
4692255--4692295	13	3.2	13	82	0	55	39	0	0	60	0.96
4692332--4692366	18	1.9	18	94	0	61	68	0	0	31	0.90
4696451--4696509	29	2.0	29	87	6	84	44	3	3	49	1.36
4698581--4698614	12	2.8	12	90	4	50	2	11	0	85	0.71
4701637--4701664	10	2.8	10	100	0	56	10	14	10	64	1.50
4701907--4701974	35	1.9	35	90	0	109	29	7	19	44	1.77
4719206--4719251	23	2.0	24	91	4	76	45	8	0	45	1.34
4723850--4723908	15	3.8	16	73	10	50	44	1	3	50	1.28
4723830--4723904	32	2.2	36	79	9	86	44	1	2	52	1.23
4723897--4723939	22	2.0	22	81	9	52	46	0	2	51	1.13
4723911--4724008	38	2.6	38	77	6	94	42	1	2	54	1.19
4725566--4725604	20	1.9	20	84	5	51	41	2	2	53	1.28
4725734--4725762	2	14.5	2	100	0	58	0	48	0	51	1.00
4725877--4726008	68	1.9	68	82	0	165	34	10	18	35	1.86
4727310--4727342	12	2.5	14	85	14	52	39	0	3	57	1.14
4729342--4729377	2	18.0	2	100	0	72	50	0	0	50	1.00
4737031--4737118	27	3.3	27	80	4	70	26	11	35	27	1.90
4737051--4737127	27	2.9	27	90	0	118	23	10	38	27	1.87
4740026--4740055	15	1.9	16	93	6	53	36	0	10	53	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4740202--4740239	11	3.7	10	86	13	51	42	0	2	55	1.14
4740202--4740246	20	2.2	19	84	15	54	44	0	2	53	1.13
4740436--4740468	11	3.1	11	91	4	50	39	0	0	60	0.97
4740439--4740473	10	3.4	10	92	4	52	31	0	0	68	0.90
4740466--4741388	458	2.0	458	100	0	1846	35	11	15	37	1.84
4745393--4745503	24	4.6	23	75	11	82	37	11	6	44	1.67
4747884--4747908	10	2.5	10	100	0	50	48	0	8	44	1.32
4748624--4748664	21	2.0	22	85	9	59	48	4	2	43	1.37
4749928--4750030	51	2.0	51	100	0	206	23	7	21	47	1.76
4759638--4759716	30	2.5	32	78	13	76	50	1	0	48	1.08
4759615--4759716	31	3.3	31	72	23	90	53	1	0	44	1.11
4761730--4761765	19	1.9	18	88	5	54	11	11	22	55	1.66
4771228--4771257	10	2.9	10	95	5	51	20	0	3	76	0.92
4771248--4771345	36	2.7	36	75	10	94	42	1	1	55	1.13
4771344--4771401	11	4.9	11	78	15	53	32	6	0	60	1.23
4771328--4771400	26	2.8	26	72	2	76	34	4	0	61	1.15
4771446--4771502	20	2.8	21	86	10	82	31	0	7	61	1.23
4771461--4771564	4	25.8	4	69	19	56	34	0	1	62	1.13
4771481--4771532	15	3.6	14	89	5	77	34	0	1	63	1.06
4771472--4771563	25	3.8	24	76	15	91	35	1	1	61	1.10
4771456--4771511	20	2.7	21	86	8	62	33	0	3	62	1.12
4771456--4771501	10	4.5	10	83	2	56	32	0	4	63	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4771507--4771553	19	2.4	21	76	20	57	36	2	0	61	1.08
4771456--4771564	14	7.9	14	74	19	77	34	0	1	62	1.12
4784728--4784789	25	2.3	28	76	15	69	40	0	0	59	0.97
4786100--4786147	23	2.2	21	85	7	60	47	0	0	52	1.00
4789426--4789465	12	3.3	13	80	13	50	62	0	0	37	0.95
4789711--4789785	31	2.4	31	95	0	132	52	0	4	44	1.20
4792512--4792555	14	3.1	14	80	6	52	50	0	2	47	1.13
4792552--4792591	18	2.2	19	86	4	55	37	0	0	62	0.95
4792588--4792628	15	2.7	15	88	11	57	29	0	2	68	1.03
4809930--4809960	2	15.5	2	100	0	62	48	0	0	51	1.00
4813436--4813492	24	2.4	25	85	5	73	24	10	5	59	1.51
4813557--4813616	24	2.5	25	81	7	63	60	3	6	30	1.39
4814319--4814382	25	2.6	23	76	16	65	48	0	1	50	1.10
4814429--4814474	21	2.3	19	81	7	56	56	0	0	43	0.99
4814702--4814793	39	2.4	39	82	10	102	48	0	1	50	1.08
4815672--4815732	29	2.1	28	81	3	68	50	0	1	47	1.10
4815841--4815891	19	2.8	18	80	8	59	45	0	0	54	0.99
4825055--4825085	2	15.5	2	100	0	62	48	0	0	51	1.00
4831304--4831422	64	1.9	64	82	6	154	33	6	12	47	1.68
4831730--4831769	19	2.0	20	86	13	57	47	2	0	50	1.14
4832311--4832335	11	2.3	11	100	0	50	52	20	8	20	1.71
4832533--4832587	13	4.4	13	79	9	60	30	7	0	61	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4832529--4832586	24	2.4	24	85	0	71	31	8	0	60	1.27
4833023--4833060	17	2.2	17	86	9	51	60	0	0	39	0.97
4833150--4833240	30	3.0	30	78	1	92	41	7	1	49	1.38
4843978--4844010	16	1.9	18	88	11	52	39	0	0	60	0.97
4844951--4844999	13	3.5	13	78	21	55	59	2	10	28	1.41
4845103--4845135	16	2.1	16	94	0	57	57	0	0	42	0.98
4845226--4845281	9	6.1	9	74	12	51	33	0	1	64	1.04
4845646--4845670	13	1.9	13	100	0	50	28	0	0	72	0.86
4853227--4853294	22	3.0	23	80	8	68	48	0	0	51	1.00
4853235--4853302	34	2.0	34	82	5	84	54	0	0	45	0.99
4854939--4854983	15	3.1	15	87	6	65	26	0	8	64	1.23
4856118--4856171	26	2.1	26	96	0	99	38	24	16	20	1.92
4858490--4858534	21	2.0	23	87	8	67	37	0	0	62	0.96
4858852--4858914	27	2.3	28	88	2	92	46	1	7	44	1.42
4858921--4858948	14	2.0	14	100	0	56	21	7	0	71	1.09
4858938--4859152	64	3.4	63	74	8	186	45	3	4	46	1.40
4859182--4859398	63	3.5	61	75	15	192	47	3	4	45	1.40
4860384--4860456	2	37.0	2	81	8	87	43	6	0	49	1.29
4860567--4860612	2	23.5	2	87	12	69	47	2	0	50	1.13
4860411--4860723	156	2.0	156	100	0	626	32	19	14	34	1.91
4865928--4865974	19	2.5	20	76	13	55	36	0	2	61	1.08
4867201--4867251	16	3.4	16	74	20	65	15	0	41	43	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4867193--4867251	28	2.1	28	96	0	109	18	0	38	42	1.51
4869003--4869043	2	20.5	2	90	9	66	48	2	0	48	1.14
4871509--4871595	34	2.4	38	72	16	94	55	1	0	43	1.07
4871566--4871609	17	2.5	17	88	3	61	63	0	0	36	0.95
4877383--4877470	34	2.6	34	83	7	115	52	5	2	39	1.38
4877537--4877621	34	2.5	34	82	1	109	42	8	9	40	1.67
4882820--4882858	20	2.0	19	85	5	51	51	2	0	46	1.14
4884015--4884061	18	2.6	19	83	6	62	63	0	0	36	0.94
4894247--4894342	49	2.0	49	100	0	192	43	18	8	29	1.79
4894327--4894383	28	2.0	28	100	0	114	45	17	10	26	1.81
4896110--4896150	20	2.1	19	86	4	55	39	0	0	60	0.96
4896188--4896227	13	3.1	13	81	0	53	57	0	0	42	0.98
4896153--4896232	33	2.5	32	75	15	83	57	1	0	41	1.07
4896476--4896524	24	2.0	24	84	0	62	69	0	4	26	1.06
4899879--4899920	17	2.3	17	88	12	57	33	0	0	66	0.92
4902971--4903009	20	2.0	20	94	0	69	28	5	5	61	1.39
4903040--4903101	26	2.4	26	78	5	63	35	1	3	59	1.23
4903040--4903122	23	3.5	23	72	18	62	36	2	4	56	1.34
4908388--4908418	11	2.8	11	95	0	53	22	0	25	51	1.48
4914388--4914430	21	2.2	20	91	8	70	53	0	0	46	1.00
4914421--4914452	16	1.9	17	93	6	57	65	0	0	34	0.93
4918104--4918133	11	2.8	11	95	5	53	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4920648--4920676	2	15.0	2	92	7	51	51	0	0	48	1.00
4925122--4925163	14	2.9	15	86	6	52	59	2	0	38	1.10
4926033--4926085	27	2.0	27	88	0	79	18	18	35	26	1.95
4927839--4927867	1	29.0	1	100	0	58	0	100	0	0	0.00
4929283--4929324	2	21.0	2	95	0	75	47	2	0	50	1.14
4940689--4940717	13	2.1	14	93	6	51	0	10	6	82	0.83
4952438--4952486	23	2.2	22	85	3	62	55	0	0	44	0.99
4956822--4956851	15	2.0	15	93	0	51	30	26	6	36	1.82
4961662--4961694	15	2.1	16	88	5	50	39	0	9	51	1.34
4963109--4963507	120	3.4	117	80	8	416	36	12	7	43	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125