genome.fa.s46.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  109  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20941677--20941747	26	2.7	26	95	2	124	23	25	21	29	1.99
20943043--20943346	159	1.9	158	85	0	419	16	27	33	23	1.96
20943319--20943371	26	2.0	26	85	7	72	28	24	16	30	1.97
20946302--20946354	26	2.0	26	92	0	88	28	28	18	24	1.98
20946384--20946672	159	1.8	158	81	2	355	16	27	32	24	1.96
20946410--20947181	387	2.0	387	90	0	1204	18	26	29	26	1.98
20947350--20947402	26	2.0	26	92	0	88	26	26	22	24	2.00
20947505--20947880	158	2.4	159	78	6	413	19	25	30	25	1.99
20947851--20947903	26	2.0	26	92	7	90	26	24	20	28	1.99
20948056--20948108	26	2.0	26	85	0	70	28	28	16	26	1.97
20948122--20948422	159	1.9	158	86	4	428	16	28	32	22	1.96
20948399--20948451	26	2.0	26	89	7	81	26	22	20	30	1.98
20949103--20949155	26	2.0	26	89	7	81	28	26	18	26	1.98
20949446--20949498	26	2.0	26	89	7	81	28	28	20	22	1.99
20949323--20950036	184	3.7	183	73	11	534	21	26	28	23	1.99
20951388--20951440	26	2.0	26	92	7	90	30	24	16	28	1.97
20951587--20951638	26	2.0	26	85	7	70	26	25	21	26	1.99
20951931--20951981	26	2.0	26	84	7	68	29	23	19	27	1.98
20951384--20952532	550	2.1	541	82	3	1349	21	25	27	24	1.99
20952479--20952531	26	2.0	26	92	7	90	26	24	20	28	1.99
20953011--20953063	26	2.0	26	92	0	88	28	28	18	24	1.98
20953354--20953406	26	2.0	26	89	7	81	28	22	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20953879--20953931	26	2.0	26	89	7	81	28	24	18	28	1.98
20954191--20954243	26	2.0	26	89	7	81	26	24	20	28	1.99
20954217--20954711	159	3.1	154	74	6	445	21	27	28	23	1.99
20954890--20954958	26	2.7	26	88	0	111	27	28	18	24	1.98
20955199--20955251	26	2.0	26	85	0	70	28	26	20	24	1.99
20962630--20962680	26	2.0	26	96	0	93	27	25	19	27	1.99
20963105--20963157	26	2.0	26	85	7	72	28	20	18	32	1.97
20963640--20963692	26	2.0	26	89	7	81	28	24	18	28	1.98
20965728--20965778	26	2.0	26	96	0	93	29	29	15	25	1.96
20966071--20966122	26	2.0	26	92	7	88	26	25	19	28	1.98
20966196--20966239	11	4.0	11	96	0	79	25	27	29	18	1.98
20966983--20967035	26	2.0	26	92	0	88	28	24	18	28	1.98
20967092--20967512	159	2.6	159	79	1	434	18	27	28	25	1.98
20967485--20967537	26	2.0	26	89	7	81	28	24	18	28	1.98
20968020--20968076	26	2.2	26	84	12	73	31	24	17	26	1.97
20968517--20968569	26	2.0	26	92	7	90	26	24	20	28	1.99
20968711--20968766	26	2.2	26	93	0	94	30	26	17	25	1.97
20969606--20969955	158	2.2	159	81	2	391	19	27	29	23	1.98
20970105--20970157	26	2.0	26	96	0	97	26	28	20	24	1.99
20970206--20970634	159	2.7	158	79	5	461	19	28	28	23	1.98
20970448--20970817	183	2.0	185	82	3	451	22	26	27	23	2.00
20974788--20974834	23	2.0	23	95	0	85	38	4	27	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20977960--20978012	26	2.0	26	88	0	79	28	26	18	26	1.98
20978023--20978330	159	1.9	158	88	4	460	18	27	31	22	1.97
20978303--20978355	26	2.0	26	89	7	81	24	24	22	28	2.00
20979928--20979980	26	2.0	26	88	0	79	28	30	16	24	1.97
20980106--20980468	159	2.3	159	80	2	415	18	25	31	24	1.98
20980444--20980493	26	1.9	26	95	0	91	26	20	18	36	1.95
20980638--20980690	26	2.0	26	92	0	88	30	26	16	26	1.97
20980986--20981035	26	1.9	26	92	8	84	24	24	20	32	1.98
20981669--20981721	26	2.0	26	88	0	79	28	28	20	22	1.99
20981835--20982196	158	2.3	159	80	7	412	19	26	29	24	1.98
20982170--20982221	26	2.0	25	92	3	86	26	21	21	30	1.98
20982364--20982415	26	2.0	26	88	7	79	30	26	17	25	1.97
20982863--20982915	26	2.0	26	88	0	79	24	22	20	32	1.98
20983412--20983467	26	2.2	26	90	6	87	30	21	17	30	1.96
20984124--20984179	26	2.2	26	86	0	76	32	25	16	26	1.96
20984458--20984510	26	2.0	26	89	7	81	24	24	22	28	2.00
20985181--20985259	26	3.0	26	92	0	122	29	27	17	25	1.98
20985233--20985734	158	3.2	158	76	6	514	21	27	28	22	1.99
20985708--20985760	26	2.0	26	89	7	81	28	22	18	30	1.98
20985907--20985956	26	1.9	26	95	0	91	24	28	22	26	1.99
20985554--20986115	184	3.0	183	75	11	528	20	27	29	23	1.99
20986247--20986298	26	2.0	26	92	7	88	26	25	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20986968--20987020	26	2.0	26	85	0	70	30	26	18	24	1.98
20987079--20987812	159	4.6	159	74	4	611	19	28	29	22	1.98
20987079--20987812	316	2.3	316	78	3	733	19	28	29	22	1.98
20987785--20987836	26	2.0	26	85	7	70	28	25	15	30	1.96
20988498--20988549	26	2.0	25	89	10	79	25	26	23	25	2.00
20988427--20988767	186	1.8	186	83	3	454	22	26	26	24	2.00
20989207--20989259	26	2.0	26	92	7	90	26	22	22	28	1.99
20988959--20989606	355	1.9	344	81	7	786	19	25	29	25	1.98
20988959--20989606	344	1.9	350	81	7	798	19	25	29	25	1.98
20989899--20989951	26	2.0	26	85	7	72	26	24	18	30	1.98
20990773--20990825	26	2.0	26	85	7	72	28	22	18	30	1.98
20992007--20992375	159	2.3	157	79	4	393	23	27	26	22	1.99
20992667--20992724	26	2.2	26	90	3	89	29	24	20	25	1.99
20993530--20993582	26	2.0	26	92	7	90	26	22	20	30	1.98
20993655--20993680	11	2.4	11	100	0	52	15	30	34	19	1.93
20994252--20994304	26	2.0	26	85	7	72	26	22	20	30	1.98
20994753--20994805	26	2.0	26	85	7	72	28	22	18	30	1.98
20994703--20995094	197	2.0	197	85	2	527	19	26	28	25	1.99
20995310--20995355	24	1.9	24	86	0	65	34	19	30	15	1.93
20995434--20995489	26	2.2	26	86	0	76	33	25	17	23	1.96
20995780--20995832	26	2.0	26	89	7	81	26	20	20	32	1.98
21000165--21000217	26	2.0	26	89	7	81	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21000875--21000925	26	2.0	26	92	0	84	27	29	17	25	1.98
21001059--21001111	26	2.0	26	82	7	63	28	20	18	32	1.97
21000956--21001317	196	1.8	196	84	1	492	21	24	27	25	1.99
21009330--21009401	26	2.8	26	97	0	135	26	19	19	34	1.96
21009554--21009606	26	2.0	26	92	0	88	28	28	18	24	1.98
21009720--21010083	158	2.3	159	79	10	388	21	25	28	25	1.99
21009904--21010454	184	3.0	183	82	3	615	22	25	27	24	2.00
21010239--21010291	26	2.0	26	92	0	88	28	28	18	24	1.98
21010424--21010475	26	2.0	26	84	0	68	32	21	17	28	1.96
21010550--21010581	11	2.9	11	90	0	55	28	25	28	18	1.98
21011039--21011117	26	3.0	26	88	0	122	26	26	18	27	1.98
21011091--21011591	159	3.2	158	77	4	526	20	26	29	23	1.99
21012279--21012331	26	2.0	26	89	7	81	28	26	18	26	1.98
21012754--21012806	26	2.0	26	89	7	81	26	26	20	26	1.99
21013121--21013173	26	2.0	26	85	0	70	28	24	20	26	1.99
21013990--21014042	26	2.0	26	85	7	72	28	24	22	24	2.00
21012398--21014545	869	2.5	864	84	1	2776	20	26	29	23	1.99
21014491--21014543	26	2.0	26	89	7	81	26	24	18	30	1.98
21027228--21027280	26	2.0	26	88	0	79	28	26	18	26	1.98
21027287--21027587	158	1.9	158	83	2	390	16	28	32	22	1.96
21033778--21033830	26	2.0	26	92	7	90	28	26	20	24	1.99
21033804--21034305	158	3.2	158	73	7	478	21	25	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21034279--21034331	26	2.0	26	85	7	72	28	22	18	30	1.98
21034659--21034711	26	2.0	26	82	7	63	26	22	16	33	1.96
21034770--21035189	159	2.6	160	80	5	458	19	28	28	24	1.98
21035161--21035213	26	2.0	26	92	0	88	30	22	18	28	1.98
21035856--21035908	26	2.0	26	85	7	72	24	30	18	26	1.98
21036198--21036250	26	2.0	26	96	0	97	28	26	18	26	1.98
21036678--21037106	159	2.7	158	74	8	377	18	29	28	24	1.98
21037079--21037131	26	2.0	26	89	7	81	28	24	18	28	1.98
21037432--21037484	26	2.0	26	82	7	63	30	22	18	28	1.98
21038583--21038635	26	2.0	26	89	7	81	26	22	20	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125