genome.fa.s46.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  88  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17254742--17254823	3	27.3	3	90	4	103	28	1	4	65	1.20
17261799--17261828	15	1.9	16	93	6	53	33	0	0	66	0.92
17262739--17262786	19	2.6	18	75	12	53	50	4	4	41	1.41
17268557--17268634	34	2.3	34	77	4	86	46	11	3	38	1.59
17270241--17270275	18	1.9	18	100	0	70	40	25	5	28	1.78
17271536--17271583	4	11.8	4	78	12	53	70	2	4	22	1.15
17271540--17271583	13	3.5	13	84	3	54	70	2	4	22	1.17
17272901--17273087	44	4.3	44	82	4	193	46	13	11	28	1.77
17273788--17273870	24	3.5	24	75	6	80	43	15	4	36	1.68
17273732--17273951	92	2.4	90	81	10	227	42	14	5	37	1.70
17273722--17273948	46	5.0	46	73	8	162	41	14	6	37	1.71
17275283--17275315	16	2.0	17	94	5	59	6	27	30	36	1.81
17279386--17279412	14	1.9	14	100	0	54	18	0	0	81	0.69
17281761--17281825	31	2.1	31	82	2	78	21	12	0	66	1.24
17292634--17292699	17	4.1	17	75	9	66	72	0	3	24	0.98
17292958--17292994	17	2.2	17	90	9	58	48	8	0	43	1.32
17292968--17292997	9	3.4	9	90	9	53	43	10	0	46	1.37
17292820--17293359	275	2.0	275	83	6	691	42	8	8	40	1.65
17295020--17295054	9	4.0	9	92	3	54	77	0	22	0	0.78
17295020--17295051	15	2.1	15	94	0	55	78	0	21	0	0.76
17297031--17298137	550	2.0	550	88	1	1666	36	13	12	37	1.83
17300806--17301031	117	1.9	117	82	3	285	46	8	12	32	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17302073--17302114	22	1.9	22	85	0	57	30	16	21	30	1.95
17302447--17302491	18	2.5	18	85	0	63	40	8	24	26	1.84
17302666--17302747	41	2.0	41	92	4	139	31	8	21	37	1.84
17302712--17302773	32	1.9	32	90	0	97	29	9	20	40	1.84
17302748--17303029	102	2.8	101	80	3	323	36	10	18	34	1.86
17303580--17303748	82	2.0	83	83	1	214	32	8	20	38	1.83
17304598--17304654	26	2.2	26	84	6	71	10	19	0	70	1.16
17310398--17310422	13	1.9	13	100	0	50	8	0	8	84	0.79
17314260--17314669	144	2.8	144	83	5	456	41	9	13	35	1.77
17314776--17314820	22	2.0	23	83	8	58	31	11	6	51	1.63
17315151--17315268	56	2.1	56	93	4	204	41	3	1	53	1.28
17315209--17315289	22	3.7	22	74	12	78	40	3	1	54	1.26
17316670--17316697	3	9.3	3	100	0	56	32	0	0	67	0.91
17323169--17323220	26	2.0	26	92	7	88	80	11	1	5	0.96
17323966--17324063	18	5.6	17	70	18	60	34	5	24	35	1.78
17329877--17329911	16	2.2	16	94	0	61	42	11	14	31	1.81
17335403--17335482	29	2.9	28	75	12	67	65	6	0	28	1.17
17335917--17335950	17	1.9	18	88	5	52	2	20	0	76	0.92
17337912--17338003	13	6.9	13	81	4	67	55	20	6	17	1.64
17337914--17338003	26	3.4	26	79	3	99	56	21	5	16	1.60
17337992--17338030	19	2.1	19	85	0	51	35	17	15	30	1.91
17338505--17338552	19	2.5	18	77	12	51	37	0	4	58	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17340075--17340109	15	2.4	14	90	9	52	82	0	14	2	0.77
17342512--17342559	15	3.1	15	84	3	51	18	2	2	77	0.97
17342546--17342594	22	2.2	22	77	0	53	2	16	4	77	1.01
17343027--17343098	31	2.3	30	81	11	83	19	8	25	47	1.77
17343114--17343213	51	1.9	52	84	6	132	29	13	18	40	1.87
17343244--17343886	214	3.0	216	96	0	1200	25	17	19	36	1.94
17344011--17344048	20	2.0	20	89	5	60	57	15	0	26	1.38
17344059--17344084	11	2.4	11	100	0	52	84	7	0	7	0.77
17355169--17355717	115	4.8	113	76	8	409	20	23	13	42	1.87
17355871--17355945	26	2.9	25	84	7	87	17	25	21	36	1.95
17356059--17356095	10	3.8	10	92	7	67	10	8	0	81	0.89
17356061--17356095	9	3.8	9	92	7	61	8	8	0	82	0.83
17356059--17356095	19	1.9	19	100	0	74	10	8	0	81	0.89
17356911--17356966	19	3.0	19	84	5	69	19	1	1	76	0.96
17356911--17356964	18	2.9	18	86	2	63	18	1	1	77	0.95
17356977--17357023	24	2.0	24	83	8	60	25	4	2	68	1.19
17358581--17358615	8	4.4	8	85	0	52	82	0	17	0	0.66
17359293--17359334	9	4.5	10	88	5	54	83	0	9	7	0.81
17359813--17359842	9	3.4	9	95	4	53	93	6	0	0	0.35
17359811--17359846	13	2.8	13	91	4	56	91	8	0	0	0.41
17359849--17359895	16	3.0	16	84	3	60	76	0	19	4	0.95
17359809--17359900	7	12.4	7	74	20	55	79	3	13	4	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17359866--17359908	22	2.0	22	86	9	61	74	0	18	6	1.04
17360970--17361026	24	2.5	22	83	11	62	71	5	1	21	1.14
17360993--17361031	18	2.2	18	86	9	53	79	5	0	15	0.90
17361867--17361896	3	10.0	3	100	0	60	66	0	0	33	0.92
17362160--17362496	119	2.8	120	84	1	435	44	12	21	20	1.84
17362164--17362573	119	3.5	117	82	4	348	44	12	21	21	1.84
17373411--17373506	43	2.2	44	80	12	110	37	2	13	46	1.55
17373540--17373609	13	5.9	11	75	21	54	75	2	1	20	1.00
17373541--17373609	24	2.8	24	78	6	68	76	2	1	18	0.98
17373923--17373966	20	2.2	20	91	0	70	47	25	0	27	1.52
17375459--17376047	33	18.0	33	71	12	295	36	17	14	32	1.90
17375498--17375942	65	6.7	65	74	10	285	36	16	14	32	1.89
17375617--17375822	102	2.0	102	100	0	412	32	16	16	34	1.91
17375951--17376044	32	2.9	32	78	6	91	40	17	12	29	1.86
17376099--17376158	31	1.9	31	89	0	93	25	30	13	31	1.93
17377123--17377148	5	5.2	5	100	0	52	76	23	0	0	0.78
17377831--17377867	19	1.9	19	88	0	56	56	29	5	8	1.51
17381148--17381403	116	2.3	113	85	6	288	17	12	5	64	1.44
17381184--17381415	116	2.0	116	98	0	446	15	12	5	66	1.42
17381360--17381424	21	3.1	21	78	6	62	12	9	7	70	1.33
17382434--17382490	30	1.9	30	88	0	87	36	31	12	19	1.89
17385982--17386143	56	2.9	56	84	3	211	48	8	9	34	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17386185--17386455	55	4.9	55	82	6	309	48	7	8	35	1.63
17386170--17386455	110	2.6	109	82	9	343	49	7	8	34	1.62
17387592--17387660	29	2.3	29	73	9	68	31	20	2	44	1.66
17391430--17391468	7	5.3	7	82	11	51	82	0	17	0	0.68
17391430--17391470	11	3.6	12	80	9	50	82	0	17	0	0.66
17391430--17391476	16	2.8	17	90	9	71	80	0	17	2	0.80
17391430--17391477	23	2.0	24	88	4	71	81	0	16	2	0.79
17391737--17391772	17	2.1	17	89	0	54	83	0	11	5	0.80
17393841--17393873	16	2.0	17	88	5	50	54	24	6	15	1.63
17394762--17394885	66	1.9	65	93	1	212	32	8	23	35	1.86
17410628--17410673	24	1.9	24	86	8	67	43	4	4	47	1.42
17410767--17410791	2	12.5	2	100	0	50	52	0	0	48	1.00
17412575--17412613	19	2.0	19	85	5	51	56	0	0	43	0.99
17414343--17414571	125	1.8	125	81	3	282	34	13	15	35	1.88
17417696--17417827	12	10.3	12	72	12	75	45	28	3	22	1.70
17417696--17417749	24	2.2	24	93	0	99	44	27	3	24	1.70
17417770--17417833	28	2.2	29	88	5	94	50	28	1	20	1.58
17421168--17421197	13	2.3	13	94	0	51	46	3	26	23	1.68
17421202--17421886	235	2.9	235	82	3	831	38	12	12	35	1.81
17427885--17428143	140	1.9	140	81	4	317	30	8	16	44	1.77
17428990--17429042	21	2.5	22	79	11	58	37	11	28	22	1.89
17437725--17437773	25	2.0	25	100	0	98	28	18	16	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17441488--17441525	19	2.0	20	85	15	53	52	15	0	31	1.43
17443620--17443658	17	2.2	18	81	9	53	5	20	12	61	1.50
17445898--17445947	2	25.0	2	95	0	91	48	0	2	50	1.12
17448023--17448069	3	15.7	3	95	0	85	70	0	0	29	0.88
17465099--17465137	20	2.0	20	90	5	62	25	0	5	69	1.09
17466379--17466719	45	7.4	43	75	11	164	41	18	11	28	1.85
17466455--17466769	48	6.6	49	75	10	219	41	19	11	27	1.86
17466457--17466772	96	3.3	95	79	12	285	41	18	11	27	1.86
17466422--17466770	50	7.4	45	72	14	206	41	18	11	28	1.85
17470772--17470813	14	2.8	16	79	20	54	35	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125