genome.fa.s46.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  83  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16582878--16582915	6	6.8	6	91	8	55	0	0	13	86	0.56
16584316--16584346	2	15.5	2	93	0	53	48	3	0	48	1.17
16588129--16588156	14	2.0	14	100	0	56	7	14	21	57	1.61
16594118--16594184	30	2.2	30	83	0	80	28	11	17	41	1.85
16596041--16596077	19	1.9	19	88	0	56	24	5	10	59	1.52
16596134--16596166	16	2.1	16	94	5	59	48	0	0	51	1.00
16596134--16596224	19	5.2	16	74	17	58	50	0	2	47	1.13
16596150--16596229	18	4.2	20	68	27	59	52	0	2	45	1.14
16596253--16596313	18	3.7	17	79	18	67	39	0	3	57	1.15
16601195--16601253	3	19.7	3	100	0	118	33	0	0	66	0.92
16601411--16601455	21	2.1	22	91	4	74	20	4	0	75	0.97
16601594--16601634	12	3.4	12	86	6	57	21	0	0	78	0.76
16601689--16601758	20	3.6	18	75	17	59	68	10	0	21	1.18
16601695--16601755	21	3.0	19	80	17	61	70	9	0	19	1.15
16602270--16602307	17	2.2	17	90	9	60	13	0	10	76	1.02
16602712--16602771	3	19.7	3	96	3	111	66	0	0	33	0.92
16603017--16603272	40	6.4	39	77	8	230	41	15	12	30	1.84
16603017--16603272	81	3.2	80	79	6	295	41	15	12	30	1.84
16603172--16603273	39	2.6	39	85	3	143	42	16	11	29	1.84
16603379--16603505	34	3.6	34	71	12	101	39	12	15	32	1.85
16603398--16603591	40	5.0	40	76	7	184	39	15	15	29	1.89
16616960--16616998	20	1.9	20	89	5	60	28	2	25	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16617566--16617612	19	2.6	18	86	3	58	12	12	2	72	1.21
16617578--16617634	17	3.2	17	87	9	71	17	5	5	71	1.23
16617591--16617675	18	4.8	17	76	16	66	18	2	7	71	1.19
16618124--16618197	37	2.0	37	81	2	85	36	17	16	29	1.92
16621783--16621841	11	5.4	11	72	11	50	79	6	10	3	1.03
16622624--16622901	120	2.3	120	80	2	299	23	23	13	39	1.90
16622750--16622927	60	3.0	60	75	3	178	24	26	12	35	1.92
16623135--16623397	120	2.2	120	83	4	325	23	23	12	40	1.88
16623212--16624163	60	16.0	60	67	11	228	24	23	12	40	1.89
16624294--16624471	90	2.0	90	93	1	304	25	24	10	39	1.87
16624411--16624561	60	2.5	60	87	1	221	25	29	12	33	1.92
16624596--16624721	60	2.1	60	80	2	137	23	21	12	42	1.87
16624885--16625117	120	1.9	120	84	6	312	18	24	13	42	1.86
16625288--16625312	3	8.3	3	100	0	50	36	0	0	64	0.94
16625406--16625475	17	4.2	17	75	13	67	28	1	0	70	0.96
16625428--16625471	23	2.0	23	95	4	81	34	2	0	63	1.07
16625406--16625475	3	24.3	3	80	8	83	28	1	0	70	0.96
16625915--16625969	20	2.8	20	78	13	60	20	9	25	45	1.80
16626426--16626475	18	2.8	18	84	0	64	16	6	6	72	1.25
16626460--16626506	24	1.9	25	91	4	78	25	2	6	65	1.27
16626796--16626835	12	3.2	12	89	3	53	82	7	2	7	0.92
16626876--16626929	3	18.7	3	86	7	76	66	1	1	29	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16627849--16627887	3	13.0	3	100	0	78	66	0	0	33	0.92
16630869--16630910	21	2.0	22	85	4	59	50	11	19	19	1.78
16631515--16631592	39	2.0	39	100	0	156	43	5	10	41	1.61
16632145--16632181	17	2.1	18	90	5	58	48	5	13	32	1.65
16634445--16634755	160	1.9	160	83	4	394	33	10	14	41	1.81
16635310--16635369	23	2.6	23	76	7	59	46	6	28	18	1.74
16635310--16635351	23	1.9	23	85	9	61	45	9	30	14	1.77
16635533--16635899	182	2.0	182	88	3	551	28	12	15	43	1.83
16636294--16636365	33	2.2	33	82	5	83	36	6	15	41	1.74
16636826--16636868	18	2.3	19	80	15	54	53	6	2	37	1.41
16637069--16637241	88	2.0	87	89	1	265	53	6	5	34	1.50
16638155--16638196	22	1.9	22	90	0	66	28	14	14	42	1.84
16639097--16639194	28	3.4	28	78	13	101	38	25	8	27	1.84
16639916--16639967	19	2.7	20	73	8	54	23	13	13	50	1.77
16640488--16640593	52	2.0	52	94	0	185	28	5	12	53	1.60
16642608--16642993	145	2.7	147	76	7	383	32	13	14	38	1.86
16643425--16643479	24	2.3	24	75	6	58	63	7	18	10	1.49
16648882--16648937	20	2.8	20	73	10	60	26	8	17	46	1.78
16649235--16649409	89	2.0	89	85	2	235	38	10	13	36	1.80
16649332--16649520	49	3.8	49	82	3	209	39	13	11	34	1.81
16649339--16649520	99	1.8	99	84	4	251	39	13	10	35	1.80
16649499--16649582	38	2.3	36	82	8	105	40	9	16	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16649536--16649795	49	5.2	49	83	5	283	39	13	13	34	1.83
16649399--16649645	138	1.8	137	84	5	347	40	12	13	34	1.82
16649399--16649677	138	2.0	137	82	4	330	39	12	13	34	1.82
16649543--16649745	100	2.0	100	89	0	307	40	11	12	35	1.79
16649578--16649795	100	2.2	99	84	4	278	39	12	13	33	1.83
16649578--16649824	100	2.5	100	82	3	241	38	13	14	33	1.85
16651177--16651211	15	2.3	15	90	0	52	8	5	0	85	0.73
16651190--16651226	14	2.4	16	86	8	51	8	2	2	86	0.76
16651186--16651226	15	2.7	15	88	11	57	9	2	2	85	0.78
16658215--16658259	22	2.0	22	100	0	90	31	13	17	37	1.89
16660239--16660282	21	2.2	20	83	4	52	70	2	9	18	1.24
16660467--16660509	18	2.4	18	80	0	50	55	13	18	11	1.68
16668558--16668599	22	1.9	22	85	9	59	4	11	7	76	1.15
16668946--16669478	144	3.6	150	78	10	456	42	9	12	34	1.76
16669049--16669503	144	3.2	141	82	5	500	40	9	12	37	1.75
16669601--16669639	20	1.9	19	85	10	51	23	15	10	51	1.73
16669983--16670388	68	6.0	68	83	7	511	41	16	10	32	1.82
16669983--16670381	137	2.9	137	88	3	565	41	16	10	31	1.82
16672199--16672235	17	2.1	18	85	14	51	13	10	0	75	1.04
16672190--16672258	21	3.3	20	75	20	61	10	13	0	76	1.01
16672623--16672685	25	2.5	24	77	10	72	7	4	12	74	1.19
16672782--16672822	8	4.7	9	82	14	50	2	14	2	80	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16673554--16673580	14	1.9	14	100	0	54	0	11	0	88	0.50
16677936--16677974	16	2.4	16	100	0	78	5	30	25	38	1.78
16680893--16680931	20	2.0	20	89	0	60	10	17	12	58	1.61
16681574--16681988	146	2.9	144	83	5	469	42	10	13	33	1.78
16683213--16683250	15	2.4	16	78	4	51	60	7	7	23	1.51
16693697--16693727	4	7.8	4	100	0	62	25	0	22	51	1.48
16695539--16695593	2	27.5	2	92	0	83	56	0	43	0	0.99
16696565--16696608	21	2.1	21	83	8	54	70	2	0	27	0.99
16697343--16697372	2	15.0	2	100	0	60	50	0	0	50	1.00
16697923--16699276	235	5.8	233	74	9	910	51	6	10	31	1.62
16700165--16700212	17	2.8	17	93	3	78	31	31	22	14	1.94
16700575--16700636	31	2.0	31	87	0	88	40	12	6	40	1.69
16701228--16701266	17	2.2	18	86	4	53	79	0	5	15	0.90
16703197--16703236	9	4.4	9	83	0	53	77	0	0	22	0.77
16704417--16704461	22	2.0	22	83	8	56	22	4	2	71	1.15
16704318--16705348	234	4.5	231	73	14	689	29	12	7	50	1.68
16710123--16710213	27	3.2	27	66	22	78	54	8	2	34	1.43
16710100--16710216	58	2.0	58	98	0	225	52	9	3	34	1.50
16710105--16710202	33	3.2	32	67	21	93	53	9	2	35	1.45
16710111--16710206	31	3.2	30	67	21	85	54	8	2	35	1.42
16710936--16710988	21	2.5	20	78	6	61	58	13	1	26	1.45
16713305--16713348	19	2.3	19	92	0	70	15	11	27	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16713945--16713979	15	2.2	16	90	10	63	45	20	17	17	1.85
16721422--16721462	22	1.9	21	85	5	55	36	14	7	41	1.74
16726704--16726742	15	2.4	16	83	12	53	48	35	0	15	1.45
16729855--16730119	133	2.1	127	91	5	435	40	13	10	35	1.79
16740732--16740775	22	2.0	22	82	8	54	79	4	2	13	0.98
16742403--16742429	13	2.1	13	100	0	54	40	7	14	37	1.74
16743229--16743258	3	10.0	3	100	0	60	66	0	0	33	0.92
16745454--16745528	37	2.0	37	94	0	132	44	14	10	30	1.79
16746067--16746278	105	2.0	107	87	1	311	49	13	13	24	1.77
16746663--16746761	48	2.1	48	86	0	135	34	21	18	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125