genome.fa.s46.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  57  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11328253--11328362	51	2.2	50	86	6	150	17	0	34	48	1.47
11328318--11328412	23	4.2	22	78	5	84	25	0	30	44	1.54
11328356--11328412	23	2.5	23	97	2	107	26	0	31	42	1.56
11328291--11328389	44	2.3	44	79	11	123	18	0	34	47	1.49
11328426--11328475	16	3.1	16	85	0	73	16	0	42	42	1.47
11328430--11328481	16	3.2	16	81	5	61	17	0	34	48	1.48
11329539--11329572	15	2.3	15	94	0	59	5	5	8	79	1.05
11330221--11330635	109	3.8	109	83	3	503	40	16	20	22	1.91
11330222--11330634	218	1.9	220	84	3	564	40	16	20	23	1.91
11330656--11331195	121	4.6	121	86	7	804	34	16	17	32	1.92
11330706--11331162	228	2.0	228	92	0	763	34	15	17	32	1.91
11331727--11331972	33	7.5	33	77	9	200	33	15	20	29	1.94
11331760--11331971	66	3.2	66	82	5	232	33	16	20	29	1.95
11336038--11336119	41	2.0	41	97	0	155	28	14	15	41	1.87
11338210--11338250	19	2.2	19	86	8	57	58	17	0	24	1.38
11339991--11340093	14	6.7	14	71	22	64	21	0	29	49	1.50
11340016--11340065	21	2.4	21	71	18	50	24	0	30	46	1.53
11339988--11340094	49	2.1	50	88	6	155	22	0	29	47	1.51
11340122--11340161	16	2.5	15	84	11	53	15	0	37	47	1.45
11341562--11341623	32	1.9	33	87	9	92	29	0	0	70	0.87
11343918--11343958	18	2.2	19	83	12	50	46	4	2	46	1.37
11344059--11344100	17	2.4	18	84	7	52	50	2	0	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11344122--11344161	21	1.9	21	89	0	62	45	12	10	32	1.75
11346924--11346989	32	2.1	32	91	0	105	53	7	19	19	1.69
11355637--11355696	15	4.0	15	72	21	54	16	10	0	73	1.09
11355704--11355744	18	2.2	20	86	8	59	17	7	9	65	1.44
11356400--11356454	19	3.0	19	77	15	53	50	1	5	41	1.36
11357732--11357769	19	2.0	19	100	0	76	21	10	21	47	1.80
11371732--11371828	22	4.3	21	67	14	59	30	5	14	49	1.65
11371805--11371918	45	2.6	44	82	1	138	29	8	17	43	1.79
11372115--11372205	27	3.4	25	72	18	67	31	14	13	40	1.84
11372086--11372464	18	21.1	18	74	7	207	30	12	13	44	1.80
11372189--11372343	71	2.2	71	87	5	215	29	10	14	45	1.78
11372192--11372433	89	2.7	88	82	6	290	28	10	14	46	1.78
11372296--11372397	53	1.9	54	84	6	136	27	9	13	49	1.74
11372179--11372415	71	3.3	69	80	9	196	27	11	14	46	1.79
11372836--11372872	14	2.6	14	91	0	56	59	2	5	32	1.34
11374192--11374228	15	2.5	15	87	12	58	13	8	0	78	0.96
11374186--11374243	25	2.4	25	75	13	66	13	13	0	72	1.13
11376188--11376225	8	5.0	8	87	9	53	76	2	0	21	0.91
11376188--11376225	15	2.5	15	91	0	58	76	2	0	21	0.91
11376156--11376225	22	3.2	22	78	10	63	71	2	2	22	1.13
11376297--11376544	127	1.9	128	86	2	356	27	14	18	39	1.90
11383017--11383059	24	2.0	21	82	17	52	20	13	11	53	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11383602--11383656	27	2.1	27	86	3	76	50	0	12	36	1.41
11387489--11387621	59	2.2	59	84	9	164	24	2	15	57	1.50
11387582--11387653	26	2.7	25	80	8	81	20	0	16	62	1.33
11387594--11387643	25	2.0	26	92	4	84	24	0	16	60	1.36
11387684--11387747	23	2.9	22	81	13	69	17	0	20	62	1.33
11387684--11387740	22	2.6	23	81	13	66	17	0	21	61	1.35
11391186--11391244	29	2.0	31	86	6	86	50	3	10	35	1.53
11393571--11393649	28	2.7	28	80	5	77	50	1	2	45	1.23
11394591--11394655	2	33.0	2	93	3	69	41	0	9	49	1.35
11397259--11397333	36	2.1	36	97	0	141	32	13	12	42	1.80
11397327--11397366	2	20.0	2	94	0	71	47	2	0	50	1.14
11398573--11398621	14	3.5	14	86	10	73	57	0	40	2	1.10
11399889--11399917	14	2.0	15	93	6	51	20	3	0	75	0.94
11401862--11401911	20	2.3	21	80	16	57	62	2	4	32	1.25
11401878--11401917	20	2.0	20	100	0	80	60	0	5	35	1.19
11401876--11401925	20	2.5	20	84	15	77	56	0	6	38	1.24
11407517--11407668	60	2.5	60	77	14	152	46	5	6	41	1.52
11407552--11407673	60	2.0	60	85	0	163	45	4	7	43	1.51
11414307--11414468	73	2.2	73	93	0	270	32	21	16	30	1.95
11420375--11420584	117	1.8	116	82	7	273	29	16	17	36	1.92
11429277--11429891	49	12.5	49	80	5	544	31	12	16	40	1.85
11429277--11429884	99	6.2	97	80	7	534	31	11	16	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11430084--11430127	18	2.5	17	85	7	61	11	4	2	81	0.92
11430090--11430139	15	3.1	16	85	8	57	8	8	2	82	0.93
11430084--11430134	23	2.2	24	86	10	70	9	5	1	82	0.91
11430089--11430127	18	2.2	18	95	0	69	10	5	2	82	0.93
11430384--11430430	23	2.0	23	87	0	67	38	19	8	34	1.82
11431038--11431096	30	1.9	30	86	3	82	28	1	1	67	1.10
11432821--11432855	19	1.9	17	88	11	52	31	2	8	57	1.44
11436735--11436774	21	1.9	21	84	0	53	30	10	2	57	1.45
11441796--11441825	12	2.4	13	94	5	53	43	0	0	56	0.99
11452348--11452456	55	2.0	55	94	3	195	29	3	19	47	1.66
11454419--11454473	25	2.2	24	75	9	58	70	5	5	18	1.26
11455276--11455374	3	33.3	3	76	6	94	60	3	3	33	1.27
11457013--11457065	22	2.4	22	71	6	54	49	15	1	33	1.55
11457767--11457803	14	2.4	16	86	8	51	18	8	2	70	1.25
11458317--11458502	93	2.0	93	100	0	372	45	15	6	33	1.71
11460755--11460894	69	2.0	69	95	0	253	45	11	20	23	1.83
11462633--11462682	22	2.3	22	83	13	59	32	26	14	28	1.94
11462431--11462701	132	2.1	129	77	10	280	25	16	15	42	1.88
11462694--11462913	37	5.9	37	74	9	135	16	24	15	44	1.85
11462743--11462985	74	3.3	72	80	5	256	15	23	15	46	1.84
11462956--11463059	38	2.8	36	78	9	111	16	18	13	51	1.76
11462732--11463072	74	4.6	74	76	7	246	15	22	16	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11462969--11463087	38	3.2	37	77	8	125	14	18	15	52	1.75
11462710--11463049	148	2.3	148	77	8	352	16	22	14	46	1.83
11462821--11463087	37	7.2	37	70	13	133	15	21	14	47	1.81
11464693--11464719	3	9.0	3	100	0	54	66	0	0	33	0.92
11464837--11464931	3	33.3	3	82	6	101	67	2	2	28	1.13
11465721--11465785	28	2.3	28	97	0	121	41	6	7	44	1.58
11466623--11466675	13	4.3	13	75	20	51	56	11	7	24	1.60
11466708--11466754	15	3.1	15	87	3	58	59	10	4	25	1.49
11466722--11466772	15	3.6	15	76	15	54	62	9	1	25	1.36
11466917--11466967	14	3.5	14	78	7	57	78	1	1	17	0.94
11466917--11466969	24	2.2	24	80	6	63	79	1	1	16	0.92
11467075--11467131	27	2.1	27	93	6	98	14	28	5	52	1.62
11472364--11472435	30	2.4	31	79	11	87	34	9	16	38	1.82
11472508--11472561	16	3.4	16	84	5	74	35	12	11	40	1.79
11472509--11472574	15	4.2	16	80	5	64	39	12	9	39	1.74
11472509--11472574	31	2.1	31	88	0	96	39	12	9	39	1.74
11478977--11479044	14	4.7	14	75	24	70	50	1	5	42	1.35
11479835--11479890	2	28.0	2	100	0	112	0	50	0	50	1.00
11479890--11479920	2	15.5	2	100	0	62	48	0	0	51	1.00
11480017--11480071	24	2.4	23	81	6	58	38	0	5	56	1.23
11480087--11480128	15	2.8	15	82	10	50	38	0	4	57	1.20
11483138--11483184	17	2.8	17	96	0	85	51	8	4	36	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11483377--11483438	26	2.3	27	86	8	83	50	4	16	29	1.65
11483612--11483689	35	2.2	36	84	6	97	25	11	20	42	1.86
11483676--11483968	19	15.7	18	72	12	148	22	7	29	40	1.81
11483824--11483889	18	3.6	18	81	4	87	21	10	34	33	1.88
11483802--11483903	37	2.8	37	76	0	114	24	8	31	35	1.86
11484181--11484226	19	2.5	18	89	6	74	21	4	28	45	1.71
11484248--11484284	19	1.9	19	100	0	74	16	8	32	43	1.77
11484260--11484337	31	2.5	31	91	0	120	23	10	24	42	1.85
11484260--11484357	31	3.2	31	85	5	110	22	10	26	40	1.86
11484342--11484546	38	5.4	38	73	4	144	20	7	29	42	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125