genome.fa.s46.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  62  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12347090--12347173	9	9.1	9	75	14	73	7	16	1	75	1.09
12347125--12347173	25	1.9	25	87	4	71	6	16	2	75	1.09
12351278--12351488	55	3.8	55	83	3	264	35	11	8	44	1.72
12351279--12351482	109	1.9	109	91	2	338	35	11	8	44	1.72
12353101--12353134	13	2.6	13	90	0	50	73	2	5	17	1.16
12359645--12359679	16	2.1	17	89	5	54	37	2	0	60	1.12
12360053--12360094	16	2.6	17	88	7	61	40	19	7	33	1.78
12360182--12360218	17	2.2	17	90	9	58	59	2	0	37	1.12
12360952--12361378	222	1.9	216	81	7	504	47	11	15	25	1.79
12362135--12362185	23	2.2	23	89	0	75	33	13	3	49	1.61
12363284--12363347	21	3.0	21	83	0	83	20	6	3	70	1.23
12363288--12363361	21	3.5	21	81	3	78	22	5	1	70	1.16
12364280--12364391	15	7.5	15	71	12	70	18	2	5	73	1.15
12364285--12364381	11	8.4	11	75	17	63	18	1	6	74	1.09
12364280--12364376	4	25.8	4	72	15	73	18	1	5	75	1.05
12364402--12364432	16	1.9	16	93	0	53	58	3	0	38	1.15
12364434--12364545	57	1.9	58	90	1	181	49	10	9	30	1.70
12372725--12372772	17	3.1	17	66	27	52	64	8	14	12	1.49
12378706--12378742	17	2.2	17	90	0	56	16	2	5	75	1.10
12378730--12378808	23	3.5	22	81	10	88	13	5	7	73	1.22
12378822--12378858	17	2.1	18	90	5	58	59	2	0	37	1.12
12378856--12379066	61	3.5	61	80	5	211	47	10	8	33	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12379196--12379229	17	1.9	18	94	5	61	35	2	14	47	1.60
12387128--12387165	3	12.7	3	100	0	76	68	0	0	31	0.90
12394704--12394776	35	2.1	35	100	0	146	35	19	13	31	1.91
12405649--12405679	6	5.3	6	92	7	55	48	0	0	51	1.00
12405649--12405680	11	2.8	11	95	4	55	46	0	0	53	1.00
12405651--12405687	17	2.2	17	90	0	56	48	0	0	51	1.00
12408091--12408128	18	2.1	19	90	5	60	57	13	0	28	1.36
12408580--12408625	18	2.5	18	86	10	58	67	2	2	28	1.14
12408580--12408632	19	2.8	19	80	11	56	62	1	5	30	1.29
12408594--12408632	18	2.2	18	86	9	53	61	2	5	30	1.31
12408796--12408837	17	2.3	18	84	8	50	69	4	0	26	1.08
12407887--12409389	717	2.1	719	80	6	1626	51	5	11	32	1.60
12409772--12410153	190	2.0	190	89	0	584	49	5	11	33	1.61
12410088--12410866	214	3.6	213	74	11	600	52	5	9	32	1.56
12410168--12410912	214	3.4	212	77	9	620	52	5	9	32	1.56
12421362--12421391	2	15.0	2	100	0	60	50	0	0	50	1.00
12425250--12425531	139	2.0	139	100	0	564	35	8	20	35	1.83
12436660--12436692	2	16.5	2	100	0	66	48	0	0	51	1.00
12441306--12441369	21	3.2	21	67	13	62	39	3	12	45	1.58
12441306--12441384	39	2.0	39	95	0	140	39	2	10	48	1.51
12459931--12459986	21	2.7	21	76	13	55	19	14	33	32	1.92
12464761--12465221	239	1.9	238	84	4	599	35	11	8	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12468937--12469006	36	1.9	36	91	0	113	24	8	10	57	1.59
12472643--12472677	14	2.4	14	90	4	52	80	0	0	20	0.72
12472646--12472681	18	1.9	19	94	5	65	80	0	0	19	0.71
12478803--12478873	30	2.4	30	92	0	115	29	22	14	33	1.93
12482399--12482431	16	2.0	17	88	5	50	78	6	12	3	1.04
12484565--12484634	33	2.1	33	94	0	122	30	15	25	28	1.96
12484598--12484897	88	3.4	88	84	2	379	33	14	16	36	1.89
12487875--12487906	16	1.9	17	93	6	57	53	0	3	43	1.16
12489963--12490062	51	1.9	51	90	6	157	26	17	7	50	1.71
12490651--12490702	11	4.5	11	76	9	50	80	3	0	15	0.85
12490652--12490705	23	2.4	21	77	14	63	77	5	0	16	0.94
12491043--12491089	20	2.3	20	88	0	67	59	12	10	17	1.60
12491505--12491798	148	2.0	141	84	7	378	39	16	13	30	1.87
12491754--12492220	41	11.3	41	85	2	542	42	20	12	24	1.86
12491754--12492220	83	5.6	82	86	3	535	42	20	12	24	1.86
12493226--12493271	10	4.6	10	86	8	58	0	21	0	78	0.76
12493225--12493273	20	2.4	20	86	10	64	0	20	0	79	0.73
12496758--12496800	17	2.5	18	81	11	54	76	2	9	11	1.10
12502602--12502696	50	1.9	50	86	0	136	47	4	22	26	1.69
12504415--12504459	4	10.8	4	81	9	54	75	4	0	20	0.97
12504415--12504459	21	2.1	21	91	0	72	75	4	0	20	0.97
12504413--12504459	17	2.8	17	87	6	60	74	4	0	21	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12512176--12512219	11	3.7	11	80	16	52	50	0	2	47	1.13
12522696--12522727	13	2.5	13	100	0	64	0	0	15	84	0.63
12522696--12522725	6	4.8	6	92	8	51	0	0	13	86	0.57
12533768--12533887	63	1.9	63	82	0	150	50	8	10	30	1.67
12534056--12534422	63	5.8	63	71	6	231	44	10	8	35	1.71
12534063--12534417	126	2.8	126	80	2	390	44	10	8	36	1.70
12536453--12536483	15	2.0	16	93	6	55	12	6	3	77	1.08
12536563--12536632	31	2.2	32	85	7	90	77	2	2	17	1.02
12536576--12536632	24	2.4	24	83	13	73	78	1	1	17	0.91
12537957--12538464	120	4.2	119	81	4	497	42	16	24	16	1.87
12538744--12539124	155	2.5	154	80	9	436	39	14	18	26	1.90
12538860--12539056	86	2.3	86	80	6	229	38	14	18	28	1.90
12538978--12539178	68	3.0	68	84	1	260	40	14	19	24	1.90
12539029--12539137	34	3.2	33	67	23	82	44	14	19	22	1.87
12539738--12539789	26	2.0	26	92	0	86	13	21	28	36	1.91
12539958--12540018	3	20.3	3	86	0	86	31	3	3	62	1.27
12551823--12552300	120	4.0	119	83	3	489	18	21	15	44	1.86
12552234--12552350	62	1.9	62	80	7	139	17	18	16	47	1.82
12552475--12552548	26	2.8	26	87	4	105	17	32	21	28	1.96
12552686--12552744	3	19.7	3	100	0	118	32	0	0	67	0.91
12553170--12553213	10	4.7	9	86	10	52	4	4	22	68	1.27
12553664--12553698	9	3.8	9	85	7	52	85	0	14	0	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12554426--12554456	7	4.6	7	96	4	55	0	9	12	77	0.99
12554382--12554456	14	5.4	13	72	21	55	1	8	12	78	1.01
12554747--12554788	6	7.5	6	82	12	54	2	11	0	85	0.68
12554747--12554788	10	3.9	11	90	9	61	2	11	0	85	0.68
12554772--12554880	52	2.1	51	81	11	134	13	16	13	55	1.69
12557668--12557787	44	2.8	42	78	10	129	64	8	10	16	1.49
12562746--12562783	16	2.3	17	90	4	60	68	7	2	21	1.28
12567297--12567537	60	3.9	59	73	8	169	40	10	11	37	1.76
12567991--12568036	21	2.2	22	84	7	60	36	4	2	56	1.31
12573200--12573236	2	18.0	2	88	5	56	45	5	0	48	1.25
12574117--12574150	2	17.0	2	87	0	50	55	0	0	44	0.99
12580545--12580596	23	2.3	23	100	0	104	51	0	0	48	1.00
12580586--12580639	8	7.1	8	77	12	60	74	0	0	25	0.83
12588978--12589075	33	3.0	33	74	1	99	36	18	18	26	1.94
12589505--12589763	127	2.0	127	88	1	385	42	13	9	35	1.77
12590445--12591689	161	7.7	157	76	9	861	43	15	9	31	1.78
12590464--12591623	322	3.6	319	78	7	1021	43	15	9	31	1.78
12590533--12591690	482	2.4	482	78	4	1197	43	15	9	31	1.79
12597069--12597102	16	2.1	16	88	0	50	64	11	5	17	1.45
12599650--12599708	19	3.3	19	65	18	54	49	8	1	40	1.43
12599654--12599721	34	2.0	34	94	0	118	50	8	1	39	1.43
12601890--12601917	2	14.0	2	100	0	56	0	0	50	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12604996--12605037	20	2.0	21	90	4	68	45	2	9	42	1.49
12605322--12605360	21	1.9	20	89	5	60	12	5	5	76	1.11
12610115--12610161	14	3.2	14	77	17	51	51	2	2	44	1.25
12613310--12613360	24	2.1	23	82	7	57	60	11	0	27	1.31
12613331--12613392	31	2.0	31	90	3	99	58	17	0	24	1.39
12613568--12613625	21	2.7	22	72	22	68	44	1	3	50	1.29
12615200--12615575	20	18.7	19	66	16	104	30	6	10	52	1.61
12615220--12615283	32	2.0	33	90	3	103	31	7	7	53	1.58
12615419--12615599	41	4.5	41	89	4	269	29	5	12	52	1.61
12615419--12615599	80	2.2	81	89	3	267	29	5	12	52	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125