genome.fa.s46.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  30  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5885343--5885382	21	2.0	21	85	5	55	20	15	17	47	1.83
5886331--5886372	21	2.0	21	81	9	50	40	0	4	54	1.21
5886585--5886752	85	2.0	85	90	1	266	32	8	11	47	1.70
5889070--5889116	24	2.0	24	83	8	60	36	2	10	51	1.49
5916490--5916539	16	3.7	13	78	17	57	60	0	0	40	0.97
5916480--5916558	12	5.9	13	75	20	58	55	0	1	43	1.07
5917670--5917712	13	3.6	12	87	9	61	62	0	0	37	0.95
5932501--5932547	23	2.1	23	84	4	60	44	6	2	46	1.40
5936672--5936716	22	2.0	22	86	8	63	35	4	0	60	1.17
5936683--5936729	18	2.7	18	77	16	53	31	4	2	61	1.27
5938422--5938456	18	1.9	18	88	0	52	57	0	5	37	1.23
5938515--5938572	25	2.3	25	90	0	89	58	3	0	37	1.15
5940155--5940207	23	2.3	22	78	9	61	47	0	9	43	1.36
5940200--5940237	12	3.0	12	92	7	58	52	0	0	47	1.00
5940289--5940359	25	2.5	29	77	20	71	46	2	0	50	1.16
5940391--5940449	28	2.1	29	81	6	68	33	3	1	61	1.23
5947173--5947206	2	17.0	2	93	0	59	52	0	0	47	1.00
5948376--5948409	2	17.0	2	87	0	50	55	0	0	44	0.99
5950592--5950637	13	4.3	11	82	17	53	34	0	0	65	0.93
5950601--5950635	13	2.9	12	88	12	54	40	0	0	60	0.97
5950671--5950711	15	2.7	15	88	3	55	60	0	0	39	0.96
5951037--5951112	38	2.0	38	100	0	152	26	15	21	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5954797--5954864	29	2.4	29	87	2	102	50	1	0	48	1.10
5956607--5956779	83	2.1	84	97	1	330	34	12	34	19	1.88
5958042--5958072	2	15.5	2	100	0	62	51	0	0	48	1.00
5973616--5973656	16	2.6	16	88	3	57	7	2	24	65	1.30
5975595--5975628	2	17.0	2	87	0	50	44	0	5	50	1.26
5975990--5976014	2	12.5	2	100	0	50	52	0	0	48	1.00
5976014--5976044	2	15.5	2	100	0	62	51	0	48	0	1.00
5993201--5993241	22	1.9	22	85	5	57	26	0	12	60	1.31
5996733--5996757	13	1.9	13	100	0	50	72	0	28	0	0.86
5998050--5998078	15	2.0	15	93	6	51	34	0	3	62	1.12
6004877--6005006	63	2.1	61	83	9	156	45	8	9	36	1.67
6004690--6005410	187	3.9	187	82	3	882	41	12	11	35	1.78
6016967--6017000	7	4.9	7	92	0	59	29	38	0	32	1.58
6028033--6028434	220	1.8	219	83	5	533	32	22	16	28	1.95
6030314--6030425	57	2.0	57	92	0	188	40	13	9	36	1.78
6036739--6036791	13	4.2	13	77	22	67	43	1	7	47	1.42
6046017--6046050	7	4.9	7	100	0	68	11	0	0	88	0.52
6059811--6059873	19	3.2	20	77	8	76	34	0	0	65	0.93
6059804--6059878	26	2.8	28	80	15	79	36	0	0	64	0.94
6064665--6064696	2	16.0	2	100	0	64	0	50	0	50	1.00
6068527--6068560	6	5.7	6	96	0	50	26	35	17	20	1.95
6070479--6070518	19	2.1	19	100	0	80	45	10	7	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6072602--6072627	13	2.0	13	100	0	52	30	23	15	30	1.95
6073097--6073125	3	9.7	3	100	0	58	31	0	0	68	0.89
6074303--6074353	24	2.2	24	89	3	77	33	21	7	37	1.82
6074823--6074860	6	6.3	6	82	11	51	36	0	0	63	0.95
6074827--6074861	18	1.9	18	94	0	61	37	0	0	62	0.95
6075151--6075180	12	2.5	12	94	0	51	50	0	0	50	1.00
6086071--6086683	186	3.4	186	70	12	527	36	12	12	38	1.80
6085951--6086693	356	2.1	355	86	2	1053	36	12	12	38	1.81
6090214--6090248	18	1.9	18	94	0	61	48	8	31	11	1.69
6092342--6092387	24	1.9	24	86	8	67	41	4	6	47	1.49
6094548--6094576	12	2.3	13	94	5	51	82	0	0	17	0.66
6098039--6098092	16	3.5	15	80	16	65	81	3	12	1	0.91
6098045--6098094	11	4.6	11	75	12	50	84	4	12	0	0.76
6098441--6098508	21	3.0	23	79	18	72	80	0	13	5	0.87
6099065--6099200	70	1.9	70	88	2	202	33	11	25	30	1.90
6099067--6099218	70	2.2	70	84	2	189	34	9	23	31	1.88
6099676--6100314	21	28.4	21	71	15	250	37	9	13	38	1.78
6099674--6100210	46	11.8	46	79	6	547	37	10	13	38	1.79
6099912--6100189	25	11.8	25	74	12	230	36	9	13	40	1.77
6100130--6100299	68	2.5	68	82	4	202	38	7	12	40	1.72
6100300--6100327	13	2.2	13	100	0	56	39	0	25	35	1.56
6100320--6100381	21	2.7	23	75	12	65	38	14	16	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6100342--6100446	22	4.9	22	84	2	115	37	8	16	38	1.79
6100314--6100439	22	5.8	22	77	7	114	38	9	15	36	1.80
6100211--6100416	100	2.0	101	80	5	227	38	9	15	36	1.79
6100901--6101024	41	3.0	42	83	6	130	25	12	16	46	1.81
6103448--6103479	11	2.9	11	90	0	55	21	0	28	50	1.49
6103533--6103659	52	2.5	51	87	3	173	37	8	25	29	1.86
6104192--6104249	25	2.3	26	76	8	66	34	6	36	22	1.81
6104533--6104571	11	3.5	11	89	0	60	25	0	20	53	1.45
6106469--6106502	15	2.3	15	94	0	59	17	2	61	17	1.46
6112830--6112857	2	14.0	2	100	0	56	50	0	0	50	1.00
6115401--6115441	21	1.9	22	85	5	57	80	2	12	4	0.97
6115912--6115944	18	1.9	17	88	11	50	60	0	9	30	1.27
6119498--6119523	2	13.0	2	100	0	52	50	0	0	50	1.00
6128752--6128789	20	1.9	19	89	5	58	34	10	0	55	1.34
6129677--6129711	5	7.0	5	93	0	52	0	0	14	85	0.59
6132310--6132458	71	2.1	72	96	3	275	48	6	6	39	1.53
6134859--6134905	24	2.0	24	84	16	62	55	0	2	42	1.12
6135604--6135649	23	2.0	23	83	4	58	71	0	2	26	0.97
6135865--6135923	6	9.8	6	74	7	57	67	5	0	27	1.11
6135856--6135922	30	2.2	31	89	2	100	68	7	0	23	1.15
6136129--6136168	18	2.2	18	86	0	53	47	7	10	35	1.65
6136204--6136244	19	2.2	20	86	8	59	60	7	0	31	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6136374--6136416	17	2.5	17	80	3	50	39	6	16	37	1.75
6136454--6136517	17	3.8	17	75	4	67	42	14	20	23	1.88
6136507--6136600	17	5.6	17	74	2	66	34	15	19	30	1.93
6136555--6136626	17	4.2	16	73	7	54	37	16	16	29	1.91
6137111--6137421	130	2.4	130	85	2	421	36	13	11	37	1.82
6141961--6142034	3	25.3	3	90	5	116	63	1	1	33	1.11
6141961--6142034	29	2.6	29	93	0	130	63	1	1	33	1.11
6142386--6142565	56	3.2	56	64	14	125	42	13	22	21	1.88
6142386--6142777	114	3.4	114	81	4	423	42	14	22	20	1.88
6154052--6154090	17	2.4	16	91	4	60	30	0	7	61	1.24
6154052--6154103	16	3.2	16	86	8	61	28	1	7	61	1.34
6154169--6154217	21	2.3	21	83	13	64	73	0	6	20	1.04
6154184--6154250	16	4.2	16	75	11	66	76	0	5	17	0.99
6154471--6154534	20	3.3	19	80	6	67	37	6	14	42	1.70
6154470--6154534	19	3.4	19	80	2	67	36	6	13	43	1.70
6154554--6154629	32	2.4	32	84	2	91	42	25	9	23	1.83
6155109--6155146	3	13.0	3	94	5	69	68	0	0	31	0.90
6156338--6156424	20	4.1	21	77	16	74	52	11	2	33	1.50
6156353--6156416	21	3.2	20	81	16	78	53	10	1	34	1.46
6158902--6159002	44	2.3	44	86	5	132	61	7	6	23	1.48
6166640--6166694	27	1.9	27	82	10	65	45	1	1	50	1.22
6166690--6166750	28	2.3	27	72	16	63	49	1	1	47	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6166657--6166759	41	2.4	44	84	10	144	48	0	1	48	1.19
6175108--6175136	2	14.5	2	100	0	58	51	0	0	48	1.00
6175225--6175251	2	13.5	2	100	0	54	48	0	0	51	1.00
6175450--6175476	2	13.5	2	100	0	54	48	0	0	51	1.00
6178687--6178716	2	15.0	2	100	0	60	50	0	0	50	1.00
6182964--6182998	3	11.7	3	87	0	52	0	25	0	74	0.82
6191373--6191401	12	2.5	12	94	5	51	34	0	0	65	0.93
6195218--6195261	18	2.4	18	96	0	79	34	36	0	29	1.58
6197984--6198037	26	2.0	26	86	10	74	35	1	1	61	1.18
6198136--6198188	22	2.5	22	85	14	76	49	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125