genome.fa.s46.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  31  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6198177--6198237	8	7.9	8	80	7	72	60	0	1	37	1.07
6198176--6198244	8	8.3	9	77	16	53	62	0	1	36	1.04
6198188--6198244	12	4.6	13	73	16	50	63	0	1	35	1.05
6200134--6200190	27	2.1	28	93	3	98	42	22	10	24	1.85
6200175--6200330	80	1.9	80	84	6	208	42	13	17	26	1.86
6202511--6202544	1	34.0	1	100	0	68	0	0	0	100	0.00
6204965--6205023	28	2.1	28	96	0	109	38	5	33	22	1.76
6219933--6219982	21	2.4	22	80	16	61	64	4	6	26	1.35
6243129--6243172	20	2.1	20	83	8	52	54	6	13	25	1.63
6249623--6249782	76	2.1	76	82	5	189	36	5	4	53	1.45
6252022--6252165	29	4.9	29	72	11	105	40	11	1	46	1.49
6252106--6252164	31	1.9	30	89	3	82	38	10	3	47	1.54
6252053--6252165	60	1.9	59	81	5	138	41	13	1	43	1.54
6254893--6254943	18	2.7	19	75	9	59	58	1	0	39	1.09
6259538--6259562	12	2.1	12	100	0	50	24	32	0	44	1.54
6260075--6260121	15	3.1	15	81	0	58	57	0	0	42	0.98
6260090--6260129	21	1.9	21	94	0	71	57	0	2	40	1.12
6264267--6264315	22	2.2	22	100	0	98	26	24	26	22	2.00
6265648--6265678	8	3.9	8	95	0	53	58	41	0	0	0.98
6266259--6266327	21	3.5	20	75	20	74	36	0	0	63	0.94
6268572--6268787	68	3.3	67	65	22	175	33	8	22	35	1.84
6268566--6268824	131	2.0	131	96	0	482	34	8	21	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6269817--6269883	32	2.0	33	91	5	109	59	8	19	11	1.58
6270147--6270185	20	1.9	19	85	10	51	58	2	5	33	1.33
6270963--6271076	25	4.7	24	71	11	81	25	2	31	40	1.69
6271096--6271146	14	3.7	14	73	5	59	15	0	29	54	1.41
6271083--6271214	21	6.0	22	70	14	85	22	0	29	46	1.57
6271046--6271255	87	2.4	88	82	5	221	21	0	30	47	1.57
6271116--6271187	36	1.9	38	86	8	103	25	0	27	47	1.52
6271092--6271255	87	1.9	87	87	2	240	20	1	30	47	1.58
6271267--6271314	14	3.3	14	82	5	51	20	0	25	54	1.45
6271275--6271330	16	3.7	15	79	13	53	19	0	30	50	1.48
6271046--6271350	138	2.1	142	80	11	322	20	1	30	47	1.58
6272579--6272623	22	2.0	22	83	8	56	13	2	46	37	1.55
6273615--6273647	12	2.6	13	85	4	50	15	12	0	72	1.12
6276680--6276710	3	10.3	3	100	0	62	32	0	0	67	0.91
6276823--6276856	8	4.4	8	92	3	52	67	8	0	23	1.18
6276811--6276860	16	3.1	15	80	11	55	70	6	2	22	1.20
6277079--6277478	43	9.3	40	74	14	225	41	18	14	25	1.88
6277079--6277473	86	4.6	86	82	4	422	41	18	14	25	1.89
6277148--6277458	129	2.4	130	87	3	432	42	16	15	25	1.88
6278869--6278986	8	15.8	8	74	16	60	8	16	0	74	1.05
6278870--6278956	10	8.4	10	77	19	56	8	13	0	78	0.96
6278890--6278917	6	4.7	6	100	0	56	14	14	0	71	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6278922--6278980	22	2.7	22	80	12	61	1	23	0	74	0.91
6279310--6279351	21	2.0	21	100	0	84	42	19	4	33	1.72
6284630--6284679	17	2.8	18	82	11	59	72	4	8	16	1.24
6284694--6284722	3	9.7	3	100	0	58	68	0	0	31	0.89
6284694--6284751	15	3.8	16	84	8	68	65	1	0	32	1.03
6289317--6289390	18	4.8	16	75	13	59	75	0	4	20	0.96
6289334--6289397	18	3.6	18	82	6	67	73	0	4	21	1.01
6289334--6289403	17	3.9	18	76	14	63	72	0	7	20	1.07
6289346--6289397	18	2.8	19	85	8	72	75	0	3	21	0.97
6289613--6289717	51	2.1	51	83	7	133	43	19	13	23	1.86
6290241--6290279	3	13.0	3	94	0	69	66	2	0	30	1.05
6290601--6291002	60	6.7	60	73	4	265	38	15	24	21	1.92
6290646--6291040	120	3.3	118	79	4	400	37	15	25	21	1.92
6290684--6291040	60	5.9	60	71	8	226	39	15	23	21	1.91
6301755--6301795	16	2.6	16	81	14	50	12	2	21	63	1.40
6308765--6308812	24	2.0	24	91	0	78	39	18	2	39	1.63
6314468--6314519	21	2.5	20	78	6	59	23	25	23	28	1.99
6315838--6315901	18	3.6	18	78	14	62	70	3	9	17	1.27
6315839--6315897	19	3.2	19	79	11	61	71	3	8	16	1.25
6316724--6316871	3	49.3	3	89	2	181	65	6	1	27	1.24
6322150--6322239	30	3.0	30	79	8	92	23	1	27	47	1.58
6322162--6322376	30	7.6	29	72	16	121	19	1	30	48	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6322123--6322239	61	1.9	60	84	6	155	23	0	27	47	1.57
6322183--6322296	51	2.2	51	82	3	131	15	1	33	49	1.55
6322266--6322313	14	3.4	14	76	0	60	14	0	33	52	1.42
6322233--6322347	57	2.0	58	86	5	162	18	0	33	47	1.54
6322732--6322770	3	13.0	3	83	0	51	28	2	5	64	1.28
6328835--6328873	14	2.8	14	88	0	60	84	0	7	7	0.77
6330462--6330513	22	2.3	22	83	9	61	15	9	0	75	1.05
6330578--6330661	42	2.0	42	88	4	125	28	9	5	55	1.55
6332680--6332718	20	2.0	20	89	0	60	28	2	2	66	1.18
6332712--6332756	21	2.2	21	92	7	76	48	0	0	51	1.00
6345464--6345531	34	2.0	34	97	0	127	26	5	22	45	1.75
6346405--6346451	24	2.0	25	87	8	71	36	17	8	38	1.80
6349214--6349244	3	10.7	3	93	6	55	32	0	0	67	0.91
6350112--6350252	6	23.3	6	76	15	69	19	2	3	74	1.07
6350131--6350166	10	3.5	10	92	3	54	11	0	5	83	0.80
6350199--6350254	3	18.3	3	96	3	103	32	0	0	67	0.91
6350818--6350885	17	4.1	17	74	11	52	72	7	0	20	1.09
6351206--6351232	3	9.0	3	100	0	54	66	0	0	33	0.92
6365251--6365298	24	2.0	24	100	0	96	33	12	12	41	1.80
6367737--6367871	67	2.0	67	97	0	252	32	17	17	33	1.93
6369389--6369430	18	2.3	18	95	0	75	33	4	11	50	1.60
6371571--6371796	40	5.7	40	78	4	188	28	12	15	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6371603--6371811	80	2.6	80	82	4	235	29	14	14	40	1.86
6371598--6371811	40	5.4	39	79	4	203	30	14	14	39	1.87
6371985--6372265	40	7.1	40	74	10	209	27	15	16	40	1.89
6371991--6372265	79	3.5	79	81	4	304	27	16	16	39	1.90
6371983--6372242	119	2.2	119	83	7	332	27	15	16	40	1.89
6372440--6372471	3	10.7	3	93	0	55	34	3	0	62	1.11
6373380--6373422	5	8.0	5	82	12	50	18	2	4	74	1.10
6373445--6373503	3	20.0	3	86	10	86	30	0	3	66	1.08
6377131--6377206	24	3.2	25	74	10	79	46	17	2	34	1.62
6381603--6381633	2	15.5	2	100	0	62	48	0	0	51	1.00
6383672--6383768	30	3.3	30	82	4	108	40	7	0	52	1.29
6384304--6384348	21	2.1	22	83	4	56	42	2	4	51	1.34
6387511--6387594	39	2.1	40	84	6	109	60	3	4	30	1.34
6387751--6387806	25	2.1	27	83	6	71	50	7	3	39	1.47
6387831--6387881	26	1.9	27	88	4	77	64	1	0	33	1.05
6388119--6388161	17	2.5	17	80	3	50	34	2	4	58	1.32
6388199--6388234	10	3.3	11	92	7	56	30	0	2	66	1.06
6388185--6388236	10	4.9	10	75	11	50	38	1	1	57	1.21
6391655--6391680	8	3.2	8	100	0	52	0	11	11	76	1.01
6393044--6393099	27	2.1	27	82	0	67	39	5	0	55	1.23
6394106--6394138	2	16.5	2	93	0	57	48	0	3	48	1.17
6396822--6396855	16	2.1	17	88	5	52	55	2	2	38	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6402102--6402153	25	2.1	25	92	0	86	21	17	17	44	1.87
6402801--6402830	14	2.1	14	93	0	51	46	0	3	50	1.18
6402935--6402973	18	2.2	17	90	9	60	51	0	0	48	1.00
6403003--6403072	20	3.3	20	75	13	68	50	1	2	45	1.25
6403010--6403044	17	2.1	17	88	0	52	40	2	0	57	1.14
6402937--6403074	44	3.1	44	75	17	110	47	1	1	49	1.19
6403058--6403094	17	2.2	17	90	0	56	43	5	0	51	1.24
6403003--6403086	44	1.9	43	83	7	107	48	2	2	46	1.28
6403227--6403311	42	2.0	41	86	13	120	50	1	1	47	1.16
6403338--6403393	15	3.7	15	78	4	67	57	1	0	41	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125