genome.fa.s46.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  9  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1299893--1300146	41	6.2	40	88	5	323	23	15	22	37	1.93
1299893--1300146	123	2.0	124	87	4	361	23	15	22	37	1.93
1300156--1300220	1	65.0	1	75	0	58	87	6	0	6	0.66
1300158--1300219	12	4.9	12	83	13	72	87	6	0	6	0.68
1300411--1300462	19	2.6	21	85	14	74	25	1	3	69	1.16
1300409--1300462	3	18.7	3	78	17	53	25	1	3	68	1.16
1300384--1300456	9	8.8	8	77	17	53	20	2	2	73	1.08
1300376--1300462	25	3.5	24	76	9	77	20	3	4	71	1.19
1301502--1301542	21	2.0	21	90	0	64	12	0	4	82	0.81
1301515--1301546	12	2.5	13	95	5	57	15	0	3	81	0.82
1301507--1301549	4	10.5	4	80	5	50	16	0	4	79	0.90
1304307--1304334	2	14.0	2	100	0	56	50	0	0	50	1.00
1304723--1304751	3	9.7	3	100	0	58	68	0	0	31	0.89
1309314--1309367	22	2.5	22	75	24	60	42	0	0	57	0.98
1309296--1309345	17	2.8	18	82	11	59	42	0	0	58	0.98
1309308--1309423	42	2.8	40	81	11	110	45	0	0	53	1.06
1309294--1309371	24	3.3	24	75	14	81	42	0	0	57	0.98
1309352--1309391	18	2.2	18	86	8	55	50	0	0	50	1.00
1310828--1310918	45	2.0	45	91	4	146	50	15	4	29	1.63
1317609--1317638	14	2.1	14	100	0	60	66	13	6	13	1.43
1321786--1321829	3	15.3	3	90	9	74	68	0	0	31	0.90
1322345--1322554	30	7.0	30	80	4	145	44	30	2	21	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1322381--1322433	16	3.4	16	71	10	56	39	33	3	22	1.72
1322425--1322476	14	3.6	14	79	5	59	50	23	3	23	1.66
1322425--1322463	15	2.7	14	88	4	51	51	28	2	17	1.59
1322355--1322574	119	1.8	120	85	2	309	44	30	3	21	1.68
1322415--1322616	60	3.3	60	76	7	169	46	27	2	23	1.67
1322587--1322647	26	2.5	24	79	15	63	45	26	1	26	1.63
1322676--1322705	14	2.1	14	93	0	51	43	46	3	6	1.46
1326909--1326941	16	2.0	17	88	5	50	54	0	3	42	1.15
1327538--1327608	12	5.6	12	80	6	70	19	2	22	54	1.57
1327544--1327608	26	2.5	25	83	9	85	21	1	21	55	1.52
1333995--1334027	3	11.0	3	100	0	66	66	0	0	33	0.92
1335664--1335727	28	2.3	27	78	13	67	57	0	3	39	1.14
1335874--1335912	20	2.0	20	85	9	55	46	10	10	33	1.72
1348145--1348227	43	1.9	43	95	0	148	30	21	8	39	1.83
1350175--1350202	13	2.2	13	100	0	56	21	7	0	71	1.09
1353273--1353297	13	1.9	13	100	0	50	36	0	0	64	0.94
1365733--1365758	2	13.0	2	100	0	52	0	50	0	50	1.00
1366751--1366846	32	3.0	33	68	10	81	48	9	9	32	1.67
1367915--1367974	16	3.8	16	77	0	66	41	13	18	26	1.87
1368002--1368052	24	2.1	24	88	0	75	68	7	1	21	1.25
1368790--1368816	11	2.5	11	100	0	54	37	0	0	62	0.95
1368996--1369035	16	2.5	16	87	0	53	52	12	7	27	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1372396--1372425	5	6.2	5	92	7	53	43	0	0	56	0.99
1376149--1376188	17	2.4	17	86	0	53	47	2	5	45	1.38
1381697--1381749	17	3.1	17	83	0	70	50	22	0	26	1.49
1388197--1388996	187	4.3	187	86	1	1088	41	10	12	35	1.77
1388801--1389043	124	2.0	122	80	11	271	39	10	13	36	1.79
1388210--1389004	373	2.1	373	87	1	1141	41	10	11	36	1.76
1388860--1389089	125	1.8	124	86	2	336	36	12	14	36	1.83
1403811--1403857	24	2.0	24	86	0	67	42	4	19	34	1.70
1404223--1404270	17	2.8	17	78	12	53	29	0	8	62	1.24
1406150--1406176	2	13.5	2	100	0	54	51	0	0	48	1.00
1413596--1413622	1	27.0	1	100	0	54	0	0	0	100	0.00
1413885--1414005	55	2.2	56	79	7	129	44	2	14	38	1.59
1413880--1414082	59	3.5	58	69	15	150	44	1	13	39	1.55
1414144--1414168	12	2.1	12	100	0	50	52	8	8	32	1.60
1421740--1421780	2	20.5	2	100	0	82	51	0	0	48	1.00
1423968--1424070	30	3.4	29	74	9	91	47	1	8	41	1.45
1424042--1424105	29	2.2	28	83	2	83	62	1	1	34	1.14
1425197--1425244	19	2.5	20	73	10	55	52	18	6	22	1.68
1428812--1428842	14	2.2	14	94	0	53	61	0	6	32	1.21
1429847--1429897	12	4.3	12	87	2	68	76	11	0	11	1.02
1429851--1429881	4	7.8	4	92	0	53	77	19	0	3	0.90
1429851--1429893	8	5.4	8	91	0	59	76	13	0	9	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1430304--1430343	19	2.1	19	90	0	62	50	15	7	27	1.70
1430363--1430431	31	2.2	31	89	0	102	55	27	4	13	1.57
1430884--1430928	21	2.1	21	84	8	56	75	2	0	22	0.91
1431144--1431414	43	6.3	43	79	7	253	42	16	13	26	1.86
1431153--1431402	87	2.9	87	79	3	263	44	16	12	27	1.83
1431565--1431621	15	3.7	15	73	13	53	40	14	8	36	1.76
1432088--1432148	21	2.9	21	85	2	77	37	21	8	32	1.83
1433252--1433318	12	5.5	11	74	20	55	10	7	0	82	0.85
1433511--1433562	22	2.4	22	96	0	95	40	19	15	25	1.90
1438876--1438914	20	1.9	21	89	5	62	23	17	5	53	1.63
1439264--1439288	11	2.3	11	100	0	50	84	0	16	0	0.63
1439301--1439355	3	19.0	3	87	7	69	61	3	1	32	1.24
1439594--1439876	113	2.5	114	79	2	300	46	15	20	16	1.84
1439825--1439951	59	2.2	59	85	0	173	44	15	22	16	1.85
1439825--1439973	59	2.5	59	80	4	149	44	16	22	17	1.87
1440801--1440947	52	2.9	51	85	6	167	16	19	13	51	1.77
1440777--1440947	52	3.4	52	82	4	163	15	19	14	50	1.78
1451676--1451706	7	4.4	7	91	0	53	16	0	0	83	0.64
1456027--1456066	15	2.6	15	88	4	53	52	0	2	45	1.14
1455819--1456125	60	5.1	59	76	10	239	37	8	5	47	1.58
1456196--1456221	3	8.7	3	100	0	52	69	0	0	30	0.89
1457516--1457557	17	2.3	18	84	12	50	78	2	7	11	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1461276--1461313	2	19.0	2	94	0	67	2	0	50	47	1.15
1461404--1461430	2	13.5	2	100	0	54	48	0	0	51	1.00
1461629--1461661	2	16.5	2	100	0	66	48	0	0	51	1.00
1462147--1462171	2	12.5	2	100	0	50	52	0	0	48	1.00
1463400--1463429	8	3.9	8	91	8	53	10	0	0	90	0.47
1463400--1463428	15	1.9	15	100	0	58	10	0	0	89	0.48
1466505--1466536	2	16.0	2	100	0	64	50	0	0	50	1.00
1467408--1467442	2	18.0	2	94	5	63	48	0	0	51	1.00
1467411--1467440	15	2.0	15	100	0	60	46	0	0	53	1.00
1467409--1467445	17	2.2	17	100	0	74	45	0	0	54	1.00
1467561--1467624	2	32.0	2	90	0	83	51	6	0	42	1.27
1469428--1469507	34	2.4	34	87	2	108	37	13	10	38	1.79
1469456--1469513	12	5.0	12	74	16	50	34	15	8	41	1.78
1470777--1470832	25	2.1	26	83	9	69	44	12	3	39	1.60
1482310--1482356	16	2.9	17	78	9	53	31	2	0	65	1.04
1484841--1484875	13	2.7	13	90	0	61	54	0	2	42	1.15
1484960--1485030	12	5.6	12	73	16	54	33	0	4	61	1.15
1485838--1485967	65	2.0	65	91	4	210	35	8	11	44	1.71
1486350--1486518	61	2.7	60	77	11	171	42	1	5	50	1.34
1486349--1486521	63	2.8	61	79	8	190	42	1	5	50	1.33
1493056--1493142	43	2.0	43	84	4	113	34	18	8	39	1.80
1493483--1493549	35	1.9	35	90	0	107	19	4	32	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1496501--1496534	18	1.9	18	88	5	52	58	5	0	35	1.22
1497247--1497296	21	2.4	21	78	12	59	36	4	0	60	1.16
1498543--1498689	77	1.9	78	91	4	244	41	5	18	34	1.73
1509198--1509313	61	1.9	61	87	3	171	44	3	23	28	1.69
1516336--1516376	17	2.4	18	80	12	50	36	2	2	58	1.24
1519139--1519260	63	1.9	63	93	0	208	29	16	19	34	1.94
1519566--1519608	19	2.2	20	87	4	61	46	0	4	48	1.22
1519968--1520040	34	2.2	33	81	16	89	36	0	6	56	1.26
1519976--1520038	31	1.9	34	87	12	96	38	0	3	58	1.14
1520045--1520110	17	4.0	16	76	7	60	50	1	3	45	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125