genome.fa.s46.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  113  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21244967--21245271	159	1.9	158	85	3	416	19	27	31	21	1.97
21245244--21245295	26	2.0	26	88	7	79	26	23	21	28	1.99
21245977--21246029	26	2.0	26	92	0	88	28	28	18	24	1.98
21246320--21246371	26	2.0	26	92	7	88	26	23	19	30	1.98
21247043--21247095	26	2.0	26	92	0	88	32	28	15	24	1.95
21247144--21247471	159	2.1	159	85	1	442	18	26	33	21	1.96
21247201--21247592	159	2.5	159	80	4	416	19	25	30	24	1.98
21247505--21247850	190	1.8	190	84	1	478	18	26	28	26	1.98
21247505--21247889	190	2.0	190	83	1	475	17	26	29	26	1.98
21247893--21247945	26	2.0	26	92	7	90	26	24	20	28	1.99
21249839--21249891	26	2.0	26	85	0	70	28	28	18	24	1.98
21249899--21250199	159	1.9	158	80	3	354	19	28	29	22	1.98
21250685--21250737	26	2.0	26	92	0	88	26	28	18	26	1.98
21250775--21251264	158	3.1	156	74	8	470	18	26	31	23	1.98
21253951--21254012	24	2.6	24	92	0	97	24	32	20	22	1.98
21256177--21256255	26	3.0	26	92	3	124	30	27	16	25	1.97
21256546--21256598	26	2.0	26	82	13	65	32	24	15	28	1.95
21257269--21257321	26	2.0	26	92	0	88	28	28	18	24	1.98
21257439--21258189	342	2.2	344	81	4	883	21	26	28	23	1.99
21258292--21258344	26	2.0	26	88	0	79	28	26	18	26	1.98
21258476--21258528	26	2.0	26	85	7	72	26	20	20	32	1.98
21259966--21260018	26	2.0	26	89	7	81	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21260168--21260227	26	2.3	26	85	0	75	30	23	16	30	1.96
21260929--21260981	26	2.0	26	89	7	81	28	24	18	28	1.98
21261125--21261175	26	2.0	26	84	0	66	27	25	17	29	1.98
21261611--21261663	26	2.0	26	85	7	72	30	24	16	28	1.97
21261832--21261884	26	2.0	26	96	0	97	26	28	20	24	1.99
21262174--21262226	26	2.0	26	89	7	81	24	22	22	30	1.99
21262898--21262948	26	2.0	26	92	7	86	29	25	19	25	1.99
21263349--21263401	26	2.0	26	89	7	81	32	24	13	30	1.93
21262991--21264047	500	2.1	502	83	2	1336	21	26	28	23	1.99
21263691--21264240	184	3.0	183	77	7	542	20	25	28	25	1.99
21264030--21264083	26	2.1	26	89	0	81	22	25	24	27	2.00
21264096--21264399	159	1.9	158	84	4	407	16	26	32	24	1.96
21264376--21264428	26	2.0	26	89	7	81	26	24	18	30	1.98
21265652--21265702	26	2.0	26	92	7	86	27	27	19	25	1.99
21265848--21265900	26	2.0	26	88	0	79	26	24	22	26	2.00
21266395--21266449	27	2.0	29	92	7	96	32	25	18	23	1.97
21273622--21273674	26	2.0	26	88	0	79	26	24	18	30	1.98
21273681--21274148	159	3.0	158	78	5	401	20	26	29	23	1.99
21274291--21274343	26	2.0	26	88	0	79	28	26	18	26	1.98
21275394--21275736	158	2.2	158	83	3	413	22	25	28	23	1.99
21275710--21275779	26	2.7	26	95	0	122	27	22	18	31	1.97
21275824--21276276	157	2.9	157	80	4	459	18	27	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21276250--21276300	26	2.0	26	88	7	77	29	23	17	29	1.97
21276968--21277023	26	2.2	26	83	6	69	30	23	16	30	1.96
21276897--21277365	183	2.5	188	81	6	549	20	28	27	23	1.99
21277242--21277560	158	2.0	157	79	3	345	21	28	28	22	1.99
21277331--21277693	159	2.3	159	77	3	338	22	25	27	25	2.00
21278415--21278915	159	3.2	159	74	6	412	21	27	28	22	1.99
21278889--21278941	26	2.0	26	89	7	81	26	26	20	26	1.99
21278730--21279957	635	2.0	622	80	8	1407	22	26	28	22	1.99
21280082--21280462	159	2.4	159	83	2	496	17	29	32	21	1.96
21281336--21281378	22	2.0	22	95	0	77	9	37	16	37	1.81
21281741--21281791	26	2.0	26	88	7	77	29	21	17	31	1.96
21282279--21282331	26	2.0	26	89	7	81	26	22	20	30	1.98
21282999--21283077	26	3.0	26	80	7	106	31	29	16	22	1.96
21284249--21284301	26	2.0	26	89	7	81	28	26	18	26	1.98
21284275--21284767	159	3.1	157	70	9	383	21	26	29	23	1.99
21284947--21284999	26	2.0	26	96	0	97	26	28	20	24	1.99
21284656--21285031	196	1.9	197	84	3	508	23	26	27	22	2.00
21284222--21285521	686	1.9	692	83	5	1714	22	25	28	23	1.99
21285632--21285687	26	2.2	26	86	0	76	30	25	16	28	1.96
21286219--21286271	26	2.0	26	92	0	88	28	26	20	24	1.99
21286684--21286720	11	3.4	11	88	0	56	32	32	18	16	1.93
21286684--21286727	22	2.0	22	90	0	70	29	29	25	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21287382--21287834	159	2.8	157	79	5	480	20	27	29	22	1.98
21287805--21287860	26	2.2	26	90	6	87	30	23	17	28	1.97
21288326--21288733	159	2.6	158	76	5	399	19	25	29	25	1.99
21288862--21288914	26	2.0	26	92	0	88	26	24	22	26	2.00
21288888--21289392	159	3.2	159	75	3	370	20	26	29	23	1.99
21287927--21289381	686	2.1	674	89	2	2207	19	26	29	24	1.98
21291399--21291451	26	2.0	26	92	0	88	28	24	18	28	1.98
21291608--21291660	26	2.0	26	92	0	88	28	24	18	28	1.98
21292581--21292633	26	2.0	26	89	7	81	26	24	20	28	1.99
21292893--21292945	26	2.0	26	85	7	72	28	22	16	32	1.96
21294422--21294474	26	2.0	26	88	0	79	26	24	18	30	1.98
21294623--21294689	26	2.6	26	85	0	98	29	28	14	26	1.96
21295389--21295439	26	2.0	26	92	7	86	29	25	15	29	1.96
21296066--21296118	26	2.0	26	92	7	90	30	24	16	28	1.97
21296274--21296326	26	2.0	26	88	0	79	28	26	18	26	1.98
21297338--21297390	26	2.0	26	89	7	81	30	24	18	26	1.98
21297791--21297843	26	2.0	26	89	7	81	32	24	13	30	1.93
21297911--21298318	159	2.6	156	77	5	408	19	26	28	25	1.99
21298472--21298525	26	2.1	26	92	0	90	27	25	20	25	1.99
21298129--21298682	184	3.0	185	79	4	555	21	24	27	25	1.99
21299984--21301008	552	1.9	539	81	6	1258	21	27	27	23	1.99
21301614--21301666	26	2.0	26	85	7	72	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21308017--21308069	26	2.0	26	85	0	70	26	26	18	28	1.98
21308776--21309214	159	2.8	158	80	6	467	17	29	31	22	1.96
21309885--21309937	26	2.0	26	88	0	79	26	22	18	32	1.97
21310069--21310121	26	2.0	26	89	7	81	28	24	18	28	1.98
21309811--21310281	184	2.5	189	82	5	533	19	28	27	24	1.99
21310247--21310608	157	2.3	159	78	2	354	23	25	26	24	2.00
21310581--21310633	26	2.0	26	89	7	81	28	24	18	28	1.98
21311366--21311816	159	2.8	158	78	4	401	21	27	28	22	1.99
21311805--21311857	26	2.0	26	85	7	72	28	26	18	26	1.98
21313032--21313449	159	2.6	158	86	3	563	16	28	30	24	1.97
21314142--21314197	26	2.2	26	90	0	85	30	25	17	26	1.97
21314265--21314307	22	2.0	22	100	0	86	6	37	18	37	1.78
21314331--21314694	158	2.3	159	83	4	448	20	24	30	25	1.98
21314670--21314720	26	2.0	26	88	7	77	29	21	17	31	1.96
21315207--21315259	26	2.0	26	89	7	81	26	22	20	30	1.98
21317184--21317236	26	2.0	26	89	7	81	28	26	18	26	1.98
21320798--21320850	26	2.0	26	96	0	97	30	24	16	28	1.97
21321142--21321193	26	2.0	26	88	7	79	28	25	17	28	1.97
21321344--21321405	26	2.4	26	94	0	106	27	27	17	27	1.98
21321647--21321699	26	2.0	26	85	0	70	28	26	20	24	1.99
21322108--21322160	26	2.0	26	92	7	90	26	22	20	30	1.98
21323012--21323064	26	2.0	26	96	0	97	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21323354--21323406	26	2.0	26	89	7	81	26	20	20	32	1.98
21324077--21324129	26	2.0	26	89	7	81	30	26	18	24	1.98
21324556--21325058	159	3.2	156	76	5	492	21	27	28	22	1.99
21324181--21325182	502	2.0	502	84	2	1289	21	26	28	23	1.99
21325213--21325266	26	2.1	26	96	0	99	27	27	18	25	1.98
21324873--21325354	184	2.6	184	78	4	400	23	25	26	24	2.00
21326294--21326798	158	3.2	158	73	10	377	21	25	26	25	2.00
21326938--21326990	26	2.0	26	92	0	88	26	26	20	26	1.99
21332559--21332614	27	2.1	27	89	0	85	26	26	21	25	1.99
21333225--21333277	26	2.0	26	88	0	79	28	26	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125