genome.fa.s46.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  12  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1860202--1860243	9	4.7	9	91	5	59	21	0	9	69	1.17
1860202--1860255	19	2.9	19	83	10	67	24	0	9	66	1.20
1860684--1860737	25	2.2	24	83	6	63	35	5	18	40	1.74
1860758--1860817	19	3.5	19	66	29	62	25	20	25	30	1.99
1860746--1860847	31	3.3	31	91	0	150	27	22	23	26	2.00
1860908--1860945	20	1.9	20	94	0	67	31	26	18	23	1.97
1861352--1861639	57	5.0	57	84	7	375	45	8	12	33	1.72
1861341--1861640	116	2.6	117	88	4	437	46	9	11	33	1.72
1862310--1862371	25	2.7	22	76	16	63	53	4	3	38	1.39
1862212--1862379	72	2.3	74	82	3	214	49	4	7	38	1.51
1863443--1863502	24	2.5	25	81	5	70	40	1	5	53	1.33
1863945--1863996	19	2.7	19	75	3	50	36	1	5	55	1.35
1874607--1874657	24	2.1	24	96	0	93	47	13	5	33	1.67
1874797--1874821	11	2.3	11	100	0	50	56	16	8	20	1.65
1878300--1878327	2	14.0	2	100	0	56	50	0	0	50	1.00
1881864--1881907	22	2.0	22	95	0	79	31	11	13	43	1.80
1885525--1885568	22	2.0	22	95	0	79	31	11	13	43	1.80
1896179--1896218	20	2.0	21	85	14	57	40	0	2	57	1.12
1896341--1896366	12	2.2	12	100	0	52	26	15	0	57	1.38
1896475--1896501	7	3.9	7	100	0	54	55	0	0	44	0.99
1896415--1896744	166	2.0	166	95	0	597	42	10	7	39	1.67
1897893--1897932	2	20.5	2	84	5	55	52	2	0	45	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1898425--1898461	17	2.2	18	90	9	60	40	5	2	51	1.39
1902815--1902843	2	14.5	2	100	0	58	48	0	0	51	1.00
1903515--1903543	2	15.0	2	92	7	51	51	0	0	48	1.00
1907033--1907068	18	2.0	18	88	0	54	25	2	41	30	1.69
1920952--1921003	19	2.7	19	81	3	50	61	3	1	32	1.25
1921016--1921298	9	29.2	9	66	19	76	59	3	1	36	1.24
1921041--1921090	21	2.5	20	81	9	59	60	2	2	36	1.20
1921127--1921296	19	8.8	18	65	20	67	58	2	1	37	1.21
1921384--1921450	34	1.9	35	82	8	84	65	5	0	28	1.16
1921408--1921530	60	2.1	57	79	10	131	54	3	0	41	1.22
1931403--1931436	2	17.0	2	93	0	59	47	0	2	50	1.16
1937010--1937048	20	1.9	21	84	5	53	79	10	2	7	1.02
1937941--1938003	19	3.2	20	75	4	56	60	0	1	38	1.07
1938583--1938608	2	13.0	2	100	0	52	50	0	0	50	1.00
1942005--1942052	22	2.1	23	85	11	64	43	0	2	54	1.12
1942977--1943010	17	1.9	18	88	5	52	38	2	5	52	1.41
1944737--1944803	26	2.6	25	88	4	98	49	10	14	25	1.76
1947106--1947144	18	2.1	18	85	4	51	41	0	5	53	1.23
1952697--1952775	41	1.9	41	86	0	113	49	29	3	17	1.64
1953114--1953154	2	20.5	2	100	0	82	51	0	0	48	1.00
1956931--1957000	26	2.7	25	75	18	72	41	2	7	48	1.45
1957934--1958006	6	12.3	6	71	18	55	17	1	4	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1957933--1957972	19	2.2	18	95	4	71	15	0	0	85	0.61
1957933--1958001	18	3.9	17	77	9	68	17	1	4	76	1.02
1957933--1958016	16	5.5	15	76	17	68	17	2	3	76	1.04
1967664--1967709	17	2.7	18	83	9	53	19	0	2	78	0.86
1969748--1969810	31	2.0	31	100	0	126	46	12	15	25	1.82
1971240--1971368	60	2.2	60	85	2	170	21	25	15	37	1.93
1972171--1972210	3	13.3	3	94	0	71	32	2	0	65	1.06
1972271--1972303	17	1.9	17	88	11	50	36	9	24	30	1.86
1972706--1972732	13	2.1	13	100	0	54	29	7	7	55	1.55
1973166--1973214	25	2.0	25	88	8	73	55	8	4	32	1.48
1973089--1973511	211	2.0	210	94	1	753	47	8	6	37	1.60
1973374--1973425	28	2.0	27	85	11	72	55	7	5	30	1.52
1977498--1977556	17	3.6	17	80	17	72	66	8	0	25	1.20
1977484--1977520	12	3.2	12	88	7	51	62	8	0	29	1.24
1977492--1977556	31	2.2	29	86	10	87	66	9	0	24	1.21
1986785--1986810	2	13.0	2	100	0	52	50	0	0	50	1.00
1992686--1992796	55	2.0	56	94	1	197	37	9	16	36	1.80
1993954--1994000	23	2.2	23	85	11	64	38	0	0	61	0.96
1994366--1994634	135	2.0	136	82	3	328	40	11	11	36	1.78
1994617--1994750	62	2.2	60	79	9	144	35	13	13	38	1.84
1994645--1994813	62	2.8	61	80	7	157	31	15	15	36	1.90
2001481--2001542	27	2.4	26	86	7	83	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2011761--2011792	11	2.9	11	95	0	55	0	12	0	87	0.54
2013512--2013537	2	13.0	2	100	0	52	50	0	0	50	1.00
2020490--2020542	19	2.7	19	83	11	63	24	1	3	69	1.15
2020511--2020550	20	2.0	20	85	4	55	30	2	2	65	1.19
2024751--2024828	35	2.2	36	84	6	106	23	12	6	57	1.58
2027926--2028014	23	3.9	23	80	5	108	29	10	10	50	1.68
2029962--2030005	22	2.0	22	90	0	70	31	9	13	45	1.75
2032465--2032715	123	2.0	123	100	0	502	29	14	20	35	1.92
2033932--2033956	8	3.1	8	100	0	50	24	12	12	52	1.72
2033966--2034009	22	2.0	22	95	0	79	34	9	11	45	1.72
2035377--2035418	13	3.3	13	86	3	50	19	0	9	71	1.13
2035385--2035420	12	2.8	13	87	8	56	19	0	8	72	1.10
2036094--2036119	12	2.2	12	100	0	52	34	7	7	50	1.60
2036162--2036219	24	2.6	21	84	13	71	29	5	10	55	1.55
2036168--2036219	24	2.3	24	87	9	74	30	5	11	51	1.61
2036244--2036282	21	1.9	20	94	5	69	23	7	10	58	1.56
2036284--2036358	34	2.2	34	83	6	91	29	0	9	61	1.27
2036345--2036411	19	3.0	21	73	20	57	26	4	11	56	1.54
2036368--2036423	24	2.3	24	85	8	78	30	3	10	55	1.51
2036434--2036572	74	1.9	74	90	0	224	31	8	12	47	1.71
2036586--2036655	18	3.8	18	70	19	54	31	2	10	55	1.47
2036625--2036672	18	2.6	18	83	9	53	37	0	4	58	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2038467--2038498	16	2.0	16	93	0	55	34	25	12	28	1.92
2042278--2042421	74	1.9	73	82	8	175	26	11	8	54	1.64
2042278--2042362	37	2.3	38	79	4	93	23	10	10	55	1.65
2042269--2042432	74	2.2	74	79	6	172	23	10	7	57	1.59
2042410--2042631	36	6.2	36	82	5	175	23	17	9	48	1.77
2042412--2042631	72	3.1	72	83	6	234	24	17	10	48	1.77
2042607--2042662	28	2.0	28	89	3	87	28	16	7	48	1.72
2042571--2042702	63	2.1	62	81	13	146	25	15	9	50	1.73
2049913--2049956	6	7.7	6	87	10	65	61	0	0	38	0.96
2049912--2049956	16	2.6	17	86	6	65	60	0	0	40	0.97
2052583--2052796	21	9.9	21	67	21	72	21	5	1	72	1.12
2052582--2052669	25	3.7	25	73	10	69	22	4	2	70	1.17
2052648--2052797	38	3.7	40	69	21	98	20	4	0	74	1.05
2052648--2052862	24	9.5	22	69	17	93	22	4	1	71	1.13
2052754--2052832	35	2.2	36	82	10	92	22	5	2	69	1.20
2052658--2052876	21	11.1	20	68	22	85	21	5	1	71	1.15
2053333--2053378	20	2.3	20	85	3	67	36	13	23	26	1.91
2053784--2053853	6	11.8	6	77	19	67	15	4	0	80	0.87
2053742--2053853	11	10.5	11	73	9	81	16	4	2	76	1.06
2053742--2053844	5	19.8	5	75	12	75	15	3	2	77	1.03
2053883--2054215	58	5.7	56	81	9	350	45	8	11	35	1.70
2053884--2054213	117	2.8	114	84	6	394	45	7	11	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2054234--2054268	9	3.9	9	96	0	61	5	2	0	91	0.50
2062600--2062625	8	3.2	8	100	0	52	76	0	11	11	1.01
2063611--2063865	41	6.1	41	87	1	294	24	16	22	36	1.94
2063611--2063865	83	3.1	82	84	5	291	24	16	22	36	1.94
2063610--2063844	124	1.9	125	84	2	321	24	15	21	37	1.93
2063872--2063914	1	43.0	1	80	0	50	90	6	0	2	0.52
2063872--2063914	11	3.8	11	88	11	61	90	6	0	2	0.52
2063872--2063914	18	2.4	17	88	11	68	90	6	0	2	0.52
2064128--2064220	23	4.3	23	73	9	61	23	5	0	70	1.07
2064229--2064277	12	4.2	12	84	5	73	18	6	0	75	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125