genome.fa.s46.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  46  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9266510--9266546	2	19.0	2	94	5	67	51	0	0	48	1.00
9269880--9269909	9	3.2	9	95	4	51	66	0	0	33	0.92
9269904--9269956	21	2.6	21	88	5	74	79	11	1	7	1.01
9270851--9270903	22	2.5	21	82	11	63	7	11	5	75	1.18
9271316--9271371	18	3.2	18	75	12	62	44	12	7	35	1.70
9271425--9271496	18	4.0	18	74	0	63	40	18	13	27	1.88
9271438--9271556	59	2.0	58	85	4	159	44	13	15	26	1.83
9271652--9271718	34	2.0	34	87	0	98	44	10	14	29	1.79
9271655--9271723	17	4.1	17	64	7	50	42	11	13	33	1.80
9271922--9272142	44	5.2	42	75	14	161	46	14	5	33	1.69
9271859--9272104	86	2.8	87	79	6	246	45	12	6	34	1.68
9271982--9272103	22	5.5	22	67	3	84	49	13	4	32	1.62
9273096--9273147	25	2.1	25	82	10	63	7	13	1	76	1.07
9273114--9273146	17	2.1	17	88	11	52	6	12	0	81	0.85
9273102--9273148	21	2.3	20	79	13	51	4	14	0	80	0.85
9277862--9277892	14	2.2	14	94	0	53	51	19	6	22	1.69
9278682--9278714	16	2.0	17	94	5	59	66	21	0	12	1.23
9279073--9279142	28	2.4	28	77	17	72	72	4	1	21	1.09
9280701--9280741	13	3.0	13	82	10	55	36	0	7	56	1.27
9288852--9288887	19	1.9	18	88	5	54	41	0	5	52	1.24
9289006--9289083	27	2.9	26	76	18	70	51	1	0	47	1.09
9289006--9289086	25	2.9	28	75	16	78	51	1	0	46	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9289879--9289965	29	3.0	28	86	3	111	35	2	1	60	1.17
9289962--9290004	17	2.6	16	82	10	59	55	2	0	41	1.12
9290285--9290357	3	24.3	3	72	10	51	61	10	1	26	1.37
9291091--9291133	21	2.0	21	86	9	59	11	16	0	72	1.13
9293938--9293990	22	2.3	23	87	9	74	28	7	5	58	1.48
9298740--9298790	22	2.3	22	80	6	59	27	9	19	43	1.82
9298783--9298953	22	7.8	22	68	11	100	32	19	11	35	1.88
9298783--9298910	44	2.9	45	80	6	129	31	19	12	36	1.89
9298827--9298948	44	2.8	44	81	3	113	33	18	12	35	1.88
9306690--9306734	23	2.0	23	81	0	54	44	22	6	26	1.77
9307991--9308445	225	2.0	228	90	3	724	27	29	19	23	1.98
9308474--9308594	63	1.9	63	82	0	152	36	8	23	31	1.85
9312481--9312549	17	4.1	16	71	17	52	49	1	2	46	1.25
9316567--9316610	23	1.9	23	81	9	54	36	4	6	52	1.49
9318386--9318468	30	2.8	30	85	5	98	39	12	2	45	1.54
9318419--9318484	30	2.2	30	86	10	91	42	4	1	51	1.31
9318724--9318796	20	3.5	20	70	27	55	50	1	0	47	1.09
9319062--9319532	235	2.0	235	92	0	791	42	9	5	42	1.61
9319669--9319716	24	2.0	24	100	0	96	37	0	20	41	1.53
9320303--9320348	24	1.9	24	86	0	65	50	30	17	2	1.58
9328662--9328693	2	16.0	2	100	0	64	0	50	0	50	1.00
9337639--9338028	200	2.0	200	80	2	451	28	15	12	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9345447--9345499	20	2.8	19	81	15	58	73	11	11	3	1.22
9345914--9346000	41	2.1	42	84	2	113	47	5	13	33	1.67
9365413--9365516	49	2.1	48	92	1	172	31	24	7	36	1.84
9367858--9367884	2	13.5	2	100	0	54	48	0	0	51	1.00
9368349--9368379	2	15.5	2	93	0	53	45	0	0	54	0.99
9368462--9368493	16	2.0	16	93	0	55	40	9	18	31	1.83
9375862--9375922	22	2.8	22	89	0	86	39	11	8	40	1.71
9378616--9378656	21	2.0	21	100	0	82	24	9	21	43	1.83
9385358--9385446	44	2.0	44	95	0	160	32	5	10	51	1.59
9388471--9388511	19	2.2	19	86	8	57	12	4	2	80	0.97
9388498--9388522	5	5.0	5	100	0	50	20	0	0	80	0.72
9390625--9390697	36	2.0	36	89	0	110	31	16	15	36	1.90
9392679--9392725	23	2.0	23	95	0	85	34	2	4	59	1.29
9398720--9398759	19	2.1	19	95	0	71	25	27	10	37	1.88
9399245--9399293	25	2.0	25	84	8	64	59	4	6	30	1.41
9404232--9404278	20	2.8	16	75	25	51	38	2	10	48	1.50
9406239--9406278	19	2.2	19	86	4	55	55	0	2	42	1.13
9406590--9406673	8	12.4	7	76	17	56	54	2	1	41	1.21
9406632--9406674	2	21.0	2	90	4	68	46	2	0	51	1.13
9407090--9407128	20	1.9	21	85	15	55	51	2	2	43	1.29
9407080--9407161	30	2.8	30	83	1	85	56	3	2	37	1.30
9407116--9407166	10	5.1	10	75	17	52	66	5	1	25	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9407289--9407348	31	1.9	32	82	3	77	50	6	1	41	1.39
9407359--9407410	18	2.8	18	79	2	59	63	5	1	28	1.28
9407569--9407616	19	2.5	20	80	16	57	29	0	6	64	1.18
9407580--9407613	9	3.7	9	88	7	50	26	0	5	67	1.13
9407756--9407782	13	2.1	13	100	0	54	22	0	7	70	1.12
9408020--9408162	10	15.0	9	74	14	94	32	0	7	59	1.31
9408070--9408131	9	6.4	10	75	18	53	25	1	6	66	1.25
9411624--9411727	30	3.5	29	75	11	104	51	0	6	40	1.35
9411986--9412039	28	1.9	28	92	0	90	25	9	16	48	1.76
9414255--9414364	28	3.8	28	76	8	87	56	1	3	38	1.28
9419080--9419131	20	2.5	20	81	3	59	34	5	1	57	1.33
9423567--9423592	9	2.9	9	100	0	52	34	7	57	0	1.27
9431801--9431854	28	1.9	28	84	0	72	61	11	9	18	1.55
9438120--9438185	32	2.1	32	100	0	132	43	12	10	33	1.76
9438436--9438470	17	1.9	18	88	11	54	42	0	0	57	0.99
9444717--9444768	21	2.5	21	90	6	79	50	0	0	50	1.00
9444717--9444768	22	2.5	22	93	6	90	50	0	0	50	1.00
9444741--9444801	30	2.0	30	83	0	77	54	1	0	44	1.10
9454238--9454282	19	2.3	19	76	3	54	40	0	4	55	1.20
9454277--9454318	18	2.3	18	87	0	57	45	2	2	50	1.27
9456738--9456963	116	1.9	117	86	0	319	45	7	11	34	1.69
9457108--9457140	13	2.5	14	85	14	52	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9457143--9457174	16	2.0	16	100	0	64	56	0	0	43	0.99
9457256--9457315	23	2.5	25	71	17	63	46	0	1	51	1.10
9465104--9465158	26	2.1	26	86	0	74	41	5	16	36	1.71
9465166--9465226	24	2.5	25	91	2	97	39	1	6	52	1.37
9465319--9465387	24	2.9	23	79	12	68	37	4	1	56	1.28
9465412--9465455	16	3.1	14	81	15	54	40	0	0	59	0.98
9465585--9465620	18	1.9	19	88	5	56	38	11	0	50	1.38
9465938--9465975	19	2.1	18	90	5	58	21	5	0	73	1.02
9466717--9466778	26	2.4	26	81	2	81	43	3	0	53	1.17
9474641--9474669	12	2.4	12	100	0	58	27	0	6	65	1.18
9478898--9478923	12	2.2	12	100	0	52	7	34	7	50	1.60
9480659--9480692	13	2.6	13	86	13	52	52	0	0	47	1.00
9480769--9481210	231	1.9	234	86	5	628	41	10	4	43	1.58
9482317--9482357	18	2.3	18	76	24	50	53	2	0	43	1.13
9482322--9482357	18	2.1	18	90	10	58	55	2	0	41	1.14
9482359--9482873	255	2.0	254	89	0	787	35	11	9	43	1.74
9483909--9483992	19	4.0	21	70	16	66	44	0	0	55	0.99
9483907--9483985	22	3.8	22	79	16	96	45	0	0	54	0.99
9484023--9484078	22	2.4	24	82	17	73	64	0	0	35	0.94
9484869--9484927	29	2.0	29	83	6	75	61	3	1	33	1.23
9485818--9486067	131	1.9	131	92	0	419	50	8	4	35	1.55
9486053--9486091	4	9.8	4	94	0	69	51	20	0	28	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9486051--9486108	8	7.2	8	94	0	71	50	13	0	36	1.42
9486081--9486115	2	17.5	2	87	0	52	48	2	0	48	1.16
9486053--9486099	12	3.9	12	94	0	67	51	17	0	31	1.46
9488248--9488305	26	2.4	24	82	8	64	51	0	10	37	1.36
9488497--9488542	22	2.0	22	83	4	56	41	2	0	56	1.11
9488825--9488855	2	15.5	2	100	0	62	0	48	0	51	1.00
9489209--9489240	3	10.7	3	93	0	55	0	28	0	71	0.86
9498846--9498882	18	2.0	20	84	10	51	54	5	5	35	1.47
9502406--9502449	21	2.1	21	95	0	79	15	13	15	54	1.71
9505035--9505063	13	2.3	13	94	5	51	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125