genome.fa.s46.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  24  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4397063--4397108	24	1.9	24	86	8	67	41	0	0	58	0.98
4399204--4399246	16	2.7	15	89	7	59	51	9	0	39	1.34
4399293--4399341	10	5.1	10	76	14	50	46	8	0	44	1.33
4399275--4399342	28	2.3	29	92	5	111	47	7	1	44	1.40
4399275--4399351	28	2.7	28	84	8	93	48	6	1	44	1.37
4400266--4400293	2	14.0	2	100	0	56	50	0	0	50	1.00
4403840--4403892	21	2.3	25	81	12	69	37	0	5	56	1.23
4405253--4405291	20	1.9	21	89	5	62	48	0	0	51	1.00
4405798--4405831	17	2.1	16	88	5	50	29	0	0	70	0.87
4414677--4414722	22	2.0	22	83	4	56	41	0	21	36	1.54
4414834--4414882	23	2.1	23	85	7	64	46	4	8	40	1.52
4415654--4415696	15	2.9	14	80	10	50	55	2	0	41	1.12
4415617--4415672	25	2.3	25	87	9	80	55	0	3	41	1.17
4420079--4420143	24	2.5	26	83	11	73	38	7	0	53	1.30
4420562--4420627	34	2.0	33	82	14	82	48	0	0	51	1.00
4421845--4421877	17	2.0	17	88	5	50	24	0	0	75	0.80
4422076--4422139	24	2.7	23	87	2	83	65	0	3	31	1.08
4424090--4424184	30	3.1	30	80	7	120	37	5	1	55	1.29
4425192--4425295	51	2.0	51	92	0	172	25	26	9	37	1.87
4431209--4431273	21	2.9	23	84	13	82	46	0	0	53	1.00
4439330--4439365	16	2.2	17	90	5	56	52	0	0	47	1.00
4441948--4441972	3	8.3	3	100	0	50	0	36	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4448330--4448361	15	2.1	15	94	0	55	71	0	3	25	1.00
4448483--4448529	13	3.1	15	82	11	53	65	10	0	23	1.23
4454762--4454801	13	3.2	13	82	7	55	57	0	0	42	0.98
4454752--4454829	23	3.3	22	78	20	70	53	1	1	43	1.16
4454775--4454827	12	4.6	12	74	21	51	54	0	0	45	0.99
4454775--4454829	23	2.4	23	85	14	78	56	0	0	43	0.99
4455050--4455076	13	2.1	13	100	0	54	33	0	0	66	0.92
4460288--4460350	24	2.6	25	84	5	83	38	4	3	53	1.38
4462016--4462239	84	2.7	83	78	2	234	29	11	41	17	1.84
4463299--4463352	22	2.5	21	74	11	56	29	3	3	62	1.29
4464457--4464514	8	7.6	8	82	7	50	81	1	5	12	0.94
4474557--4474593	2	18.5	2	100	0	74	48	0	0	51	1.00
4476275--4476317	20	2.1	21	87	12	63	65	9	6	18	1.44
4476372--4476469	49	2.0	49	80	7	110	59	14	2	24	1.46
4477154--4477202	23	2.1	23	85	14	66	57	4	2	36	1.30
4478828--4478879	22	2.5	22	93	6	90	50	0	0	50	1.00
4479305--4479354	14	3.3	15	77	11	57	54	0	0	46	1.00
4479313--4479373	16	3.3	20	72	23	62	45	0	0	54	1.00
4492837--4492874	2	19.0	2	100	0	76	50	0	0	50	1.00
4501915--4501947	8	4.1	8	85	14	50	75	0	0	24	0.80
4501914--4501947	15	2.2	15	94	5	59	73	0	0	26	0.83
4502164--4502195	17	1.9	17	93	6	57	62	12	0	25	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4511203--4511246	23	1.9	23	90	0	70	45	18	4	31	1.69
4514198--4514231	2	18.0	2	88	11	54	50	0	0	50	1.00
4514417--4514456	20	2.0	21	90	5	64	37	0	0	62	0.95
4518667--4518878	108	2.0	107	92	0	352	33	19	20	26	1.96
4521060--4521094	2	17.5	2	87	0	52	54	0	0	45	0.99
4523356--4523407	12	4.3	12	75	7	52	63	3	0	32	1.12
4525237--4525278	18	2.3	18	84	8	50	26	38	19	16	1.92
4534197--4534258	16	4.1	16	78	12	60	45	0	0	54	0.99
4534173--4534242	24	3.0	24	81	6	81	45	0	0	54	0.99
4534194--4534242	8	6.1	8	85	0	62	44	0	0	55	0.99
4534203--4534258	14	3.8	15	79	9	62	48	0	0	51	1.00
4534301--4534392	40	2.2	40	79	9	96	59	1	4	34	1.24
4537506--4537557	26	2.0	26	100	0	104	26	3	7	61	1.41
4537576--4537639	26	2.6	26	83	11	73	51	0	1	46	1.10
4537619--4537689	19	3.8	19	75	14	60	50	0	4	45	1.21
4537713--4537815	23	4.8	21	76	20	106	39	0	0	59	1.04
4537709--4537809	18	5.8	17	75	17	73	40	0	0	58	1.05
4537710--4537815	15	6.7	15	76	18	83	39	0	0	59	1.04
4537702--4537814	33	3.6	32	79	11	126	38	1	0	59	1.08
4537696--4537808	41	2.7	41	83	8	138	41	1	0	56	1.09
4537982--4538006	13	1.9	13	100	0	50	44	0	0	56	0.99
4540623--4540679	26	2.2	26	87	6	80	47	5	28	19	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4545337--4545387	8	6.1	8	82	8	57	50	11	0	37	1.39
4545339--4545387	12	4.2	12	79	10	57	51	12	0	36	1.40
4555137--4555161	12	2.1	12	100	0	50	32	0	0	68	0.90
4555587--4555640	16	3.4	16	76	5	56	46	0	0	53	1.00
4555599--4555641	15	2.8	15	78	3	50	48	0	0	51	1.00
4558006--4558044	12	3.3	12	82	7	53	69	2	5	23	1.21
4559448--4559500	23	2.3	22	81	12	61	67	3	0	28	1.07
4559463--4559491	14	2.0	15	93	6	51	68	0	0	31	0.89
4559662--4559759	48	2.0	48	86	0	133	55	4	11	29	1.54
4560493--4560544	20	2.7	20	85	8	63	34	13	11	40	1.81
4561127--4561175	25	2.0	25	88	8	73	46	4	2	46	1.33
4561506--4561609	53	2.0	53	82	0	127	53	8	10	26	1.64
4561548--4561661	55	2.0	58	81	8	135	59	7	10	22	1.54
4566736--4566798	21	3.0	21	78	0	81	39	6	11	42	1.66
4567250--4567587	41	8.3	41	81	3	337	25	13	14	47	1.80
4567250--4567587	82	4.2	82	81	3	389	25	13	14	47	1.80
4567939--4568000	6	10.7	6	73	16	51	17	3	3	75	1.07
4568875--4568916	13	3.2	13	77	9	50	16	2	7	73	1.15
4569123--4569163	18	2.3	18	86	0	55	82	4	0	12	0.81
4574509--4574570	22	2.9	22	88	7	83	51	0	0	48	1.00
4576697--4576740	23	1.9	23	86	9	63	40	18	4	36	1.71
4576907--4576946	14	2.7	15	88	3	55	45	2	0	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4586823--4586884	31	2.0	31	90	0	97	30	6	14	48	1.69
4588139--4588166	8	3.5	8	100	0	56	46	0	0	53	1.00
4588647--4588689	21	2.2	20	88	12	63	41	0	0	58	0.98
4588665--4589387	362	2.0	360	97	0	1374	39	7	5	47	1.55
4621414--4621501	43	2.0	43	95	0	158	42	12	21	23	1.87
4630650--4630675	11	2.4	11	100	0	52	34	0	0	65	0.93
4631129--4631171	19	2.2	19	88	12	61	32	0	0	67	0.91
4631190--4631247	21	2.6	23	78	10	75	55	1	0	43	1.10
4633065--4633105	14	3.0	14	79	17	50	34	2	2	60	1.23
4639197--4639223	1	27.0	1	100	0	54	0	0	0	100	0.00
4647083--4647201	61	1.9	62	83	11	156	35	8	12	43	1.73
4647135--4648950	186	9.9	185	78	8	1564	35	13	10	40	1.79
4647376--4648950	535	2.9	540	81	6	1709	36	13	10	39	1.80
4649460--4649501	18	2.3	18	100	0	84	9	0	28	61	1.27
4649468--4649512	18	2.5	18	88	0	63	15	0	26	57	1.38
4652772--4652841	35	2.0	35	83	5	88	34	18	11	35	1.87
4655863--4655926	15	3.9	16	69	18	51	53	0	1	45	1.10
4655880--4655914	16	2.2	16	95	5	63	48	0	0	51	1.00
4655868--4655965	35	2.7	35	77	17	103	50	1	1	47	1.14
4656331--4656356	11	2.4	11	100	0	52	26	0	0	73	0.84
4657051--4657089	18	2.2	18	90	0	60	71	12	0	15	1.14
4658278--4658623	41	8.2	41	74	17	128	44	17	13	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4658385--4658484	49	2.1	49	90	1	157	53	14	9	24	1.69
4658435--4658768	81	4.1	81	80	7	376	46	19	11	22	1.82
4658435--4658772	41	8.4	41	80	5	375	45	19	11	22	1.83
4659443--4659606	63	2.6	62	79	8	170	30	23	8	37	1.84
4660309--4660359	7	7.3	7	78	14	52	7	3	3	84	0.86
4665557--4665620	31	2.1	31	84	0	83	43	15	18	21	1.87
4665632--4665661	11	2.7	11	94	0	51	50	13	0	36	1.42
4666154--4666231	15	5.5	15	71	18	60	48	0	1	50	1.09
4666162--4666214	26	2.1	25	86	10	72	47	0	0	52	1.00
4672973--4673028	28	2.0	28	89	0	85	57	1	10	30	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125