genome.fa.s46.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  47  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9508765--9509466	22	32.8	22	68	15	118	51	5	8	34	1.56
9508851--9508935	43	2.0	44	83	6	111	52	9	3	34	1.51
9508937--9509023	45	2.0	44	82	11	106	50	9	10	29	1.67
9509070--9509213	65	2.2	65	78	8	148	51	7	7	33	1.59
9509108--9509213	43	2.4	44	81	6	117	48	7	10	33	1.66
9509292--9509346	21	2.9	17	78	21	65	65	1	5	27	1.25
9509292--9509468	44	4.2	42	76	9	150	55	4	6	33	1.45
9509310--9509470	85	1.9	84	86	8	229	54	4	6	34	1.47
9509307--9509386	11	7.4	11	71	12	51	58	2	5	33	1.33
9509051--9509658	22	28.0	22	70	11	103	50	6	7	36	1.57
9509934--9510142	89	2.3	87	82	5	231	44	6	8	40	1.60
9509938--9510684	22	33.8	22	67	11	141	44	6	9	38	1.63
9510127--9510164	16	2.4	16	91	4	60	47	5	5	42	1.48
9510469--9510600	66	2.0	66	84	8	171	48	8	6	37	1.58
9510492--9510684	44	4.4	43	80	2	179	45	6	8	39	1.62
9510505--9510671	66	2.5	66	79	0	172	44	5	8	40	1.60
9510982--9511035	21	2.6	21	79	5	56	51	12	3	31	1.57
9512390--9512575	68	2.7	68	81	3	185	36	16	10	37	1.82
9520680--9521340	221	3.0	215	76	8	636	25	11	8	54	1.64
9526254--9526290	20	1.9	19	89	10	58	78	0	13	8	0.96
9526645--9526692	8	5.8	8	85	7	60	72	0	18	8	1.08
9526645--9526692	17	2.9	16	87	6	60	72	0	18	8	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9527916--9528391	79	6.0	79	88	2	627	38	11	15	33	1.84
9527995--9528034	21	1.9	21	94	0	71	42	7	15	35	1.75
9528057--9528109	21	2.6	20	82	5	61	39	13	13	33	1.83
9528215--9528270	21	2.7	21	77	2	60	44	8	10	35	1.71
9528786--9529078	42	7.0	42	78	3	243	25	11	18	44	1.83
9530767--9530796	8	3.9	8	91	8	53	40	0	0	60	0.97
9530866--9530898	15	2.1	16	88	5	50	21	6	3	69	1.24
9538110--9538171	23	2.7	23	97	0	115	38	11	17	32	1.85
9547359--9547419	28	2.2	28	94	5	106	24	21	4	49	1.69
9547371--9547430	28	2.3	27	88	8	88	28	18	3	50	1.63
9547545--9547597	26	2.0	26	92	0	88	39	20	9	30	1.84
9550267--9550310	17	2.5	18	85	3	63	77	0	15	6	0.97
9550277--9550309	9	3.7	9	91	0	57	78	0	12	9	0.95
9550267--9550322	9	6.6	8	76	15	51	78	0	16	5	0.92
9551267--9551292	9	2.9	9	100	0	52	34	23	7	34	1.83
9551599--9551655	21	2.8	21	83	2	71	42	8	14	35	1.76
9551537--9552012	79	6.0	79	85	1	571	38	11	15	34	1.84
9552408--9552663	42	6.1	42	77	4	214	27	11	17	43	1.83
9552456--9552663	84	2.5	83	84	1	283	28	10	17	43	1.82
9552407--9552699	42	7.0	41	74	9	175	26	11	18	43	1.84
9554385--9554426	5	8.2	5	92	7	59	42	0	0	57	0.99
9554386--9554427	2	23.0	2	81	18	56	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9554386--9554427	7	5.8	8	81	18	56	45	0	0	54	0.99
9555782--9555810	2	14.5	2	100	0	58	48	0	0	51	1.00
9556526--9556675	66	2.2	69	77	11	159	55	9	10	25	1.63
9573345--9573396	26	2.0	26	85	7	70	40	13	5	40	1.68
9577285--9577331	3	15.7	3	95	0	85	63	2	34	0	1.06
9579437--9579507	30	2.4	29	81	6	79	42	4	18	35	1.70
9580786--9580832	20	2.3	20	96	0	85	46	6	0	46	1.28
9580872--9580931	27	2.3	26	85	2	75	33	3	0	63	1.11
9582688--9582725	14	3.0	13	88	11	53	18	7	0	73	1.06
9584807--9584863	21	2.7	21	73	13	53	47	5	1	45	1.35
9584785--9585420	325	2.0	324	93	1	1087	39	8	12	39	1.74
9597513--9597638	51	2.4	52	85	3	166	26	17	9	46	1.79
9597665--9597704	11	3.6	11	79	0	53	50	20	0	30	1.49
9597943--9598045	25	4.1	25	77	5	109	19	35	8	35	1.83
9598641--9598766	52	2.4	51	79	10	130	26	17	8	46	1.77
9603974--9604015	21	2.0	22	90	4	68	40	9	11	38	1.75
9603981--9604393	79	5.2	78	88	1	565	40	11	15	33	1.83
9604060--9604099	21	1.9	21	94	0	71	42	7	15	35	1.75
9604122--9604175	21	2.6	21	85	2	65	38	11	12	37	1.79
9604286--9604335	21	2.4	21	90	3	75	40	12	12	36	1.79
9604318--9604450	58	2.3	58	84	2	187	38	10	17	33	1.84
9604912--9605240	42	7.9	42	80	3	353	24	10	19	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9604912--9605240	83	4.0	83	83	2	385	24	10	19	45	1.82
9604910--9605175	125	2.1	125	87	1	372	25	10	18	45	1.82
9604912--9605283	41	9.0	41	78	3	325	25	11	18	44	1.83
9611151--9611193	18	2.6	16	85	10	59	46	0	2	51	1.13
9614655--9614766	8	13.8	8	86	10	147	72	0	14	12	1.17
9614656--9614766	17	6.9	15	89	8	141	72	0	14	12	1.18
9614652--9614766	49	2.4	48	91	2	176	71	0	14	13	1.20
9615781--9616190	42	10.0	42	87	8	562	23	19	21	36	1.95
9615781--9616190	122	3.3	122	92	5	666	23	19	21	36	1.95
9615781--9616190	205	2.0	205	89	6	634	23	19	21	36	1.95
9616197--9616311	1	115.0	1	73	0	95	86	10	1	0	0.68
9616198--9616311	11	10.8	10	80	14	122	86	10	1	0	0.68
9616199--9616311	20	5.5	20	83	11	140	86	10	1	0	0.69
9616390--9616443	14	3.7	14	90	5	81	83	1	9	5	0.88
9616390--9616441	10	5.4	10	79	4	54	86	1	7	3	0.76
9616514--9616551	20	1.9	19	89	5	58	86	10	2	0	0.66
9616723--9616796	28	2.5	28	74	12	69	27	5	1	66	1.22
9616783--9616826	22	2.0	21	82	4	52	15	4	2	77	1.04
9617237--9617302	31	2.1	31	82	0	78	25	22	21	30	1.99
9617357--9617395	20	2.0	20	85	5	53	23	25	20	30	1.98
9617746--9617784	17	2.2	19	90	9	64	17	0	0	82	0.68
9617811--9618373	57	9.7	56	87	10	764	44	8	13	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9617805--9618373	116	4.9	115	90	5	764	43	8	13	34	1.73
9617811--9618373	292	1.9	286	91	6	920	44	8	13	34	1.73
9620149--9620184	18	1.9	19	88	5	56	77	0	11	11	0.99
9620149--9620194	19	2.5	19	79	13	51	80	0	10	8	0.91
9620541--9620635	7	12.0	8	81	17	94	76	0	12	10	1.01
9620540--9620619	8	9.6	9	79	15	84	78	0	11	10	0.96
9620540--9620633	34	2.9	32	84	12	120	78	0	11	9	0.96
9621632--9621807	22	8.3	21	85	5	239	35	9	15	39	1.81
9621628--9621794	43	4.0	42	83	5	203	37	9	14	38	1.79
9622308--9622366	16	3.6	16	73	10	57	44	11	10	33	1.75
9622474--9622503	15	2.0	15	93	0	51	26	20	16	36	1.93
9622571--9622804	47	5.2	45	75	14	189	26	11	14	47	1.77
9622617--9622722	44	2.5	43	84	7	135	26	7	16	50	1.71
9622619--9622789	86	2.0	87	80	10	197	26	10	15	47	1.78
9622619--9622854	90	2.7	87	78	13	218	27	11	13	47	1.77
9622567--9622848	133	2.1	133	81	7	331	26	11	14	47	1.78
9623073--9623112	19	2.2	18	86	4	53	82	2	7	7	0.92
9625170--9625531	183	2.0	183	91	0	589	32	12	11	43	1.78
9625581--9625648	33	2.0	33	83	8	84	52	0	1	45	1.09
9625591--9625669	33	2.4	32	78	14	88	56	0	1	41	1.07
9628340--9628401	33	2.0	33	84	9	85	40	3	9	46	1.53
9628994--9629032	21	1.9	21	84	5	53	69	2	5	23	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9629596--9629648	21	2.7	19	78	18	56	58	0	0	41	0.98
9629654--9629701	20	2.3	20	79	10	53	45	4	6	43	1.48
9632092--9632138	21	2.3	20	82	10	60	46	8	4	40	1.54
9632277--9632315	18	2.3	17	82	8	53	12	20	28	38	1.89
9632748--9632815	24	2.7	25	79	6	75	38	1	4	55	1.29
9632759--9632817	30	2.0	30	82	0	73	37	1	5	55	1.32
9634519--9634561	22	2.0	21	86	4	59	13	0	37	48	1.43
9634573--9634687	16	7.3	15	72	14	70	23	1	29	45	1.63
9634568--9634687	32	3.8	30	75	12	91	24	1	30	44	1.64
9634569--9634687	48	2.5	47	85	8	159	24	1	30	43	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125