genome.fa.s46.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22631831

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  27  of  125  ( 14885 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5140509--5140835	118	2.8	117	92	6	554	43	7	14	34	1.74
5140499--5140835	59	5.7	60	85	7	469	44	7	13	34	1.73
5144278--5144319	9	4.7	9	91	8	68	88	0	2	9	0.61
5145889--5146383	83	6.0	81	91	6	780	22	17	22	37	1.94
5145889--5146383	41	12.0	41	91	5	786	22	17	22	37	1.94
5145889--5146383	166	3.0	166	97	1	924	22	17	22	37	1.94
5146390--5146443	8	6.6	8	87	8	65	90	7	0	1	0.51
5146390--5146443	25	2.2	25	93	0	90	90	7	0	1	0.51
5146390--5146435	1	46.0	1	86	0	65	93	4	0	2	0.41
5146640--5146688	16	2.7	19	78	15	59	32	0	6	61	1.21
5147777--5148124	59	5.8	60	83	8	453	44	8	13	33	1.74
5147803--5148124	118	2.7	119	95	0	567	43	8	14	33	1.76
5149915--5149945	14	2.1	15	94	5	55	29	6	12	51	1.65
5149988--5150027	19	2.1	19	100	0	80	52	10	5	32	1.56
5151985--5152023	15	2.6	15	79	0	51	74	0	0	25	0.82
5152017--5152065	18	2.7	18	77	0	53	34	0	4	61	1.15
5152078--5152119	17	2.3	18	88	12	59	38	0	0	61	0.96
5156346--5156407	30	2.1	30	100	0	124	50	3	3	43	1.34
5167837--5167876	9	4.4	9	83	0	53	35	0	2	62	1.09
5168273--5168345	29	2.6	29	80	10	80	31	8	2	57	1.42
5173126--5173274	73	2.0	73	90	2	237	34	14	18	32	1.91
5173516--5173545	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5175629--5175666	20	2.0	18	90	10	58	26	0	0	73	0.83
5184342--5184405	16	3.9	16	71	21	53	34	4	0	60	1.17
5184373--5184405	15	2.3	15	89	5	50	30	0	0	69	0.88
5184348--5184405	30	1.9	30	83	13	75	31	5	0	63	1.16
5185253--5185307	27	2.2	26	84	15	73	49	5	0	45	1.25
5185333--5185371	13	3.0	13	80	0	51	41	0	0	58	0.98
5186523--5186554	3	10.7	3	93	0	55	65	0	3	31	1.08
5188599--5188630	3	10.7	3	100	0	64	34	65	0	0	0.93
5197198--5197231	17	1.9	17	88	5	50	32	0	17	50	1.47
5198208--5198235	13	2.2	13	100	0	56	28	0	25	46	1.53
5199074--5199127	22	2.4	22	82	17	74	51	0	0	48	1.00
5199080--5199125	23	2.0	23	95	4	85	50	0	0	50	1.00
5201472--5201502	6	5.2	6	96	0	53	45	0	0	54	0.99
5209072--5209128	30	1.9	30	85	7	80	43	7	19	29	1.77
5209116--5209185	29	2.4	30	76	7	81	48	2	12	35	1.56
5218484--5218525	19	2.3	19	91	4	68	47	0	0	52	1.00
5218512--5218595	37	2.2	38	80	16	95	51	5	3	39	1.44
5219033--5219104	39	1.9	36	86	11	92	47	2	0	50	1.15
5219022--5219091	32	2.2	31	84	2	86	47	1	0	51	1.09
5220043--5220085	20	2.2	19	83	4	50	48	2	0	48	1.14
5223695--5223744	2	25.0	2	100	0	100	0	50	0	50	1.00
5229270--5229313	20	2.3	19	92	4	70	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5229270--5229315	10	4.7	10	81	5	58	34	0	0	65	0.93
5230234--5230280	24	2.0	24	83	4	60	42	2	8	46	1.46
5230183--5231140	478	2.0	470	84	9	1250	43	7	7	41	1.61
5237091--5237155	30	2.1	31	86	13	91	46	0	0	53	1.00
5237663--5237737	17	4.4	17	72	11	55	50	4	1	44	1.29
5237672--5237775	44	2.4	44	78	12	115	49	3	1	45	1.31
5238401--5238467	12	5.5	12	74	10	64	55	1	1	41	1.18
5238401--5238453	23	2.3	23	87	3	72	54	1	0	43	1.11
5238772--5238797	13	2.0	13	100	0	52	30	0	38	30	1.58
5239570--5239669	47	2.1	46	79	15	116	42	1	3	54	1.22
5240652--5240687	8	4.5	8	89	0	54	50	11	0	38	1.38
5240968--5241018	23	2.3	22	79	3	57	35	0	0	64	0.94
5246123--5246250	6	21.0	6	69	20	61	49	2	1	46	1.24
5246118--5246250	11	11.9	11	70	15	78	49	2	1	46	1.23
5246117--5246238	44	2.8	43	77	15	133	50	2	1	45	1.24
5246864--5246929	12	5.5	12	78	7	62	54	1	1	42	1.18
5246862--5246956	23	3.9	23	77	9	82	56	2	1	40	1.18
5248536--5248587	22	2.3	21	78	18	52	42	1	0	55	1.10
5249864--5249921	24	2.3	26	82	8	77	43	0	0	56	0.99
5254444--5254505	29	2.1	29	88	11	92	48	0	0	51	1.00
5255009--5255136	6	21.0	6	67	21	63	49	1	0	48	1.16
5255004--5255136	11	11.9	11	68	19	80	49	1	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5255012--5255126	17	6.6	17	70	21	69	49	1	0	47	1.17
5255003--5255124	44	2.8	43	77	15	133	50	1	0	46	1.16
5255098--5255149	11	4.8	11	81	11	63	46	0	0	53	1.00
5256139--5256205	12	5.5	12	70	10	55	55	2	1	40	1.24
5256139--5256182	23	1.9	23	90	0	70	52	2	0	45	1.13
5256416--5256441	13	2.0	13	100	0	52	69	0	0	30	0.89
5258030--5258063	17	1.9	18	88	5	52	64	0	5	29	1.17
5258027--5258069	18	2.4	18	80	7	52	60	0	4	34	1.17
5258873--5258910	2	19.0	2	88	0	58	50	5	0	44	1.24
5258864--5258910	8	5.9	8	94	0	67	48	10	0	40	1.38
5259991--5260034	23	1.9	23	86	9	63	45	2	2	50	1.27
5261035--5261122	25	3.5	24	74	19	83	51	0	0	48	1.00
5261057--5261143	21	4.0	22	72	18	65	52	0	0	47	1.00
5261183--5261212	12	2.5	12	88	0	51	23	3	0	73	0.98
5261331--5261366	2	18.0	2	100	0	72	50	0	0	50	1.00
5261344--5261560	110	2.0	110	94	0	380	30	11	22	35	1.90
5262179--5262348	86	2.0	84	93	2	286	32	11	7	48	1.67
5262311--5262341	16	1.9	16	93	0	53	16	3	0	80	0.83
5263681--5263739	24	2.5	24	94	0	100	13	16	11	57	1.65
5266051--5266114	27	2.4	27	91	0	110	20	20	18	40	1.91
5267616--5267664	2	24.5	2	100	0	98	51	0	0	48	1.00
5269107--5269154	24	2.0	25	87	4	71	43	10	2	43	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5269258--5269301	20	2.2	20	84	8	54	81	6	0	11	0.86
5272193--5272255	27	2.3	27	94	0	117	17	20	20	41	1.91
5274181--5274248	28	2.5	28	80	9	77	29	1	1	67	1.08
5274190--5274246	17	3.4	17	73	7	55	28	1	1	68	1.09
5283419--5283549	66	2.0	66	95	0	235	50	19	17	12	1.77
5284275--5284335	27	2.3	27	83	8	72	37	1	0	60	1.07
5284306--5284349	8	5.8	8	84	5	56	38	0	0	61	0.96
5284330--5284385	21	2.6	21	83	11	69	48	0	0	51	1.00
5284337--5284373	19	1.9	19	88	0	56	48	0	0	51	1.00
5284336--5284388	20	2.7	20	82	5	63	49	0	0	50	1.00
5285084--5285143	24	2.5	24	83	0	75	41	3	1	53	1.27
5285761--5285805	24	2.0	23	82	8	56	35	0	2	62	1.08
5286456--5286490	16	2.2	16	89	0	52	68	0	0	31	0.90
5286829--5286863	14	2.5	14	90	9	54	48	0	0	51	1.00
5286823--5286863	13	3.1	13	86	6	55	43	2	0	53	1.13
5287205--5287302	44	2.1	46	81	10	112	54	1	1	43	1.14
5287367--5287437	28	2.5	29	84	6	92	47	2	0	49	1.16
5292395--5292462	27	2.5	26	80	7	73	50	0	1	48	1.10
5292465--5292515	22	2.3	23	81	15	63	70	1	0	27	0.98
5301069--5301115	24	2.0	24	86	0	67	65	6	2	25	1.27
5301108--5301148	13	3.1	14	83	13	52	58	0	0	41	0.98
5301113--5301169	13	4.3	13	76	10	53	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5301112--5301210	32	3.2	32	77	5	107	54	1	0	44	1.06
5301088--5301170	26	3.1	26	72	11	69	61	1	1	36	1.12
5301122--5301239	61	1.9	63	82	6	152	55	0	0	43	1.11
5306223--5306278	16	3.4	16	78	4	67	66	1	0	32	1.03
5306223--5306283	25	2.5	24	81	13	70	65	1	0	32	1.02
5306219--5306302	33	2.6	31	75	14	82	61	2	0	35	1.09
5313669--5313708	14	2.7	15	84	7	55	55	2	0	42	1.13
5317022--5317073	22	2.5	22	90	6	81	51	0	0	48	1.00
5317038--5317107	30	2.4	30	80	4	81	55	1	0	42	1.08
5317063--5317122	8	7.8	8	75	7	52	61	1	0	36	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125